genome.fa.s6.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  43  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15538118--15538156	11	3.5	11	89	0	60	53	12	2	30	1.52
15540378--15540423	19	2.4	20	82	10	60	56	0	0	43	0.99
15540827--15540864	20	1.9	20	100	0	76	28	5	21	44	1.73
15543896--15543941	19	2.4	20	82	10	60	54	0	2	43	1.12
15544718--15544776	30	1.9	31	83	10	77	50	3	18	27	1.62
15545587--15545611	13	1.9	13	100	0	50	44	0	8	48	1.32
15548579--15548616	20	1.9	20	89	10	60	0	31	0	68	0.90
15549175--15549209	11	3.2	11	100	0	70	20	25	8	45	1.79
15549174--15549229	22	2.5	22	82	8	69	21	25	8	44	1.81
15549303--15549376	31	2.4	29	76	10	76	22	28	2	45	1.66
15553235--15553274	19	2.2	17	86	8	53	15	0	2	82	0.77
15557995--15558038	21	2.1	21	83	8	54	22	4	4	68	1.27
15557958--15558021	27	2.3	26	75	19	60	21	1	9	67	1.28
15561064--15561094	2	15.5	2	100	0	62	48	0	0	51	1.00
15574418--15574471	2	27.5	2	83	3	65	50	1	3	44	1.30
15575254--15575330	34	2.3	34	79	0	82	29	9	16	44	1.79
15575485--15575541	30	1.9	30	96	0	105	43	10	5	40	1.62
15575677--15575768	29	3.2	29	73	6	89	32	10	15	41	1.82
15575679--15575761	27	3.0	28	80	5	87	30	10	16	42	1.83
15579936--15580503	59	9.5	59	86	2	724	37	17	12	33	1.86
15579936--15580503	120	4.7	118	85	3	717	37	17	12	33	1.86
15579936--15580503	179	3.2	179	89	1	807	37	17	12	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15581400--15581441	11	4.1	10	80	14	50	0	2	11	85	0.68
15581403--15581441	21	1.9	20	85	15	53	0	2	12	84	0.72
15593460--15593495	18	2.0	18	94	0	63	44	8	2	44	1.48
15593964--15594004	21	1.9	22	90	5	66	29	24	21	24	1.99
15594242--15594360	43	2.8	43	85	2	150	21	38	19	21	1.93
15596743--15596896	77	2.0	76	93	3	265	18	10	16	53	1.70
15597181--15597210	9	3.2	9	95	4	51	13	0	0	86	0.57
15600968--15601027	31	2.0	31	86	3	86	33	8	1	56	1.39
15605359--15605396	9	3.9	10	83	16	53	71	0	0	28	0.87
15605355--15605393	19	2.1	19	90	9	62	66	0	0	33	0.92
15605356--15605422	4	16.5	4	76	17	50	76	0	0	23	0.79
15605355--15605421	20	3.0	22	85	12	77	74	0	0	25	0.82
15606020--15606053	15	2.3	15	100	0	68	5	23	41	29	1.78
15643516--15643566	25	2.0	25	100	0	102	15	31	7	45	1.75
15643853--15643908	12	5.1	11	79	14	53	16	3	1	78	0.97
15644297--15644376	27	3.0	26	68	13	63	58	3	3	33	1.33
15649442--15649476	4	8.8	4	93	0	61	51	25	0	22	1.48
15660451--15660510	25	2.3	27	83	11	81	20	8	0	71	1.11
15660451--15660512	26	2.4	26	76	15	74	20	8	0	70	1.12
15666666--15666753	41	2.1	41	80	0	95	47	5	10	36	1.61
15666684--15666785	41	2.5	41	83	0	114	47	4	11	36	1.62
15668601--15668671	29	2.5	30	74	21	71	28	4	1	66	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15673866--15673893	2	14.0	2	100	0	56	50	0	50	0	1.00
15682557--15682646	46	2.0	45	84	2	117	26	13	18	41	1.88
15683296--15683678	47	8.1	47	82	4	450	25	18	33	21	1.96
15683296--15683709	94	4.4	94	86	3	530	25	18	33	22	1.97
15683626--15683727	23	4.3	24	70	19	63	25	18	31	24	1.98
15683296--15683709	141	2.9	141	82	2	510	25	18	33	22	1.97
15683754--15683813	29	2.1	29	93	0	102	21	13	28	36	1.91
15684283--15684630	93	3.8	92	88	3	459	25	18	19	36	1.94
15684283--15684615	31	10.8	31	88	1	400	24	18	20	35	1.95
15686826--15687154	31	10.6	31	80	4	324	22	16	22	38	1.93
15688687--15688762	14	5.1	14	76	14	53	36	9	2	51	1.48
15688672--15688848	47	3.6	47	80	10	203	34	9	3	51	1.53
15688672--15688848	52	3.6	49	79	11	177	34	9	3	51	1.53
15689937--15690284	31	11.2	31	86	0	453	22	17	21	37	1.94
15689937--15690284	93	3.7	93	92	0	552	22	17	21	37	1.94
15695898--15696012	37	3.1	37	92	5	196	26	38	8	26	1.85
15707749--15707923	79	2.2	79	81	3	210	44	12	6	36	1.69
15708443--15708547	49	2.1	49	89	0	156	40	20	14	23	1.89
15708512--15708648	70	2.0	70	86	0	193	35	22	16	25	1.94
15720789--15720865	36	2.2	35	83	2	91	20	16	27	35	1.95
15722249--15722309	28	2.2	28	85	5	79	39	18	16	26	1.91
15724812--15724874	32	2.0	32	83	0	81	33	25	15	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15727606--15727630	2	12.5	2	100	0	50	52	0	0	48	1.00
15736142--15736185	23	1.9	23	81	9	54	52	2	2	43	1.26
15736750--15736833	28	3.0	28	80	0	105	52	13	7	27	1.66
15737731--15737780	25	2.1	24	82	10	59	50	2	4	44	1.32
15738358--15738390	15	2.2	15	89	10	50	42	0	3	54	1.15
15737649--15738646	359	2.8	339	79	10	1101	45	7	6	39	1.60
15750045--15750111	35	1.9	35	81	3	82	31	10	28	29	1.90
15752476--15752522	24	2.0	23	83	4	58	38	25	2	34	1.68
15752611--15752696	35	2.5	35	86	3	122	24	23	18	33	1.97
15756583--15756618	18	1.9	19	94	5	65	5	13	2	77	1.05
15756770--15756810	17	2.5	17	88	4	57	75	2	7	14	1.12
15757340--15757373	16	2.1	16	88	0	50	23	5	23	47	1.73
15762282--15762308	3	9.0	3	100	0	54	33	0	0	66	0.92
15764532--15764575	13	3.7	12	78	9	54	36	22	18	22	1.95
15765176--15765253	28	2.8	29	71	11	72	51	1	2	44	1.23
15765364--15765427	32	1.9	33	90	6	103	34	6	14	45	1.70
15765381--15765430	18	2.9	18	75	16	52	34	10	12	44	1.75
15767745--15767774	3	10.0	3	92	0	51	30	0	3	66	1.07
15772802--15772847	21	2.3	21	85	7	60	47	21	6	23	1.74
15775062--15775086	13	1.9	13	100	0	50	44	0	8	48	1.32
15776477--15776522	15	3.1	15	84	9	60	23	4	17	54	1.61
15778433--15778480	19	2.5	19	80	6	53	27	14	29	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15779940--15779968	9	3.0	10	90	10	51	41	0	6	51	1.28
15782079--15782173	29	3.3	29	84	0	118	28	33	2	35	1.69
15782263--15782287	7	3.6	7	100	0	50	16	0	44	40	1.47
15793042--15793075	11	3.2	11	87	8	52	64	11	23	0	1.26
15793090--15793130	21	1.9	22	90	5	66	51	4	24	19	1.66
15793090--15793134	20	2.2	21	84	11	58	55	4	22	17	1.60
15793088--15793135	21	2.3	20	79	10	60	56	4	22	16	1.58
15794843--15794878	18	2.0	18	100	0	72	38	11	16	33	1.84
15809683--15809734	2	27.5	2	79	11	56	50	1	1	46	1.23
15809853--15810125	132	2.0	132	83	5	339	44	5	4	45	1.48
15810067--15810116	22	2.3	21	80	10	55	40	8	2	50	1.43
15815047--15815077	2	15.5	2	93	0	53	51	0	0	48	1.00
15817312--15817377	26	2.6	27	76	11	68	28	3	1	66	1.15
15817313--15817369	19	3.1	19	76	20	59	28	1	1	68	1.09
15817347--15817377	12	2.5	13	94	5	55	29	3	0	67	1.06
15817351--15817407	13	4.3	14	72	17	50	24	7	0	68	1.14
15817496--15817557	14	4.2	15	84	8	74	29	1	0	69	0.98
15817517--15817560	23	2.0	22	90	4	70	25	0	0	75	0.81
15817497--15817540	15	2.9	15	87	9	63	27	2	0	70	0.99
15838137--15838204	33	2.1	33	83	5	84	36	22	11	29	1.89
15844343--15844460	34	3.3	37	81	9	102	29	16	23	29	1.97
15844362--15844469	34	3.1	34	85	1	135	25	15	27	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15851345--15851369	3	8.3	3	100	0	50	36	32	0	32	1.58
15855125--15855159	3	11.7	3	100	0	70	68	0	0	31	0.90
15865016--15865089	24	3.1	24	92	0	130	29	18	14	36	1.91
15865692--15865741	2	25.0	2	100	0	100	50	0	0	50	1.00
15866751--15866867	37	3.2	37	89	4	191	26	37	9	26	1.87
15872305--15872677	42	8.9	42	91	0	575	22	23	33	20	1.97
15872842--15872926	27	3.0	28	77	5	100	37	10	9	42	1.72
15872993--15873042	25	1.9	27	84	8	68	30	4	14	52	1.59
15873623--15873737	56	2.1	56	98	0	221	45	2	30	21	1.66
15889566--15889608	21	2.0	21	81	0	50	30	9	34	25	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66