genome.fa.s6.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  55  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20175838--20175904	15	4.5	15	73	16	50	34	4	0	61	1.16
20175880--20175945	33	2.0	32	85	2	87	33	7	0	59	1.26
20180190--20180223	13	2.6	13	100	0	68	5	35	14	44	1.70
20180497--20180535	13	2.9	13	82	17	53	48	20	0	30	1.50
20180423--20180678	85	3.1	84	83	4	288	44	13	2	39	1.57
20182762--20182815	18	2.9	18	78	10	56	74	0	14	11	1.08
20183108--20183367	129	2.0	129	93	0	439	23	28	36	10	1.88
20206953--20206984	15	2.1	15	94	0	55	53	0	0	46	1.00
20207191--20207250	26	2.3	26	77	5	68	48	5	1	45	1.34
20207433--20207948	272	1.9	272	86	4	747	39	6	9	44	1.63
20209143--20209179	18	2.0	19	94	5	67	43	0	0	56	0.99
20222899--20222928	2	15.5	2	93	6	53	50	0	0	50	1.00
20252112--20252159	16	3.0	15	72	16	51	56	2	0	41	1.11
20252109--20252177	33	2.1	33	89	5	104	59	2	0	37	1.12
20254328--20254364	18	2.0	19	94	5	67	59	0	0	40	0.97
20255203--20255263	30	2.0	30	100	0	122	26	19	9	44	1.82
20259939--20260014	3	25.0	3	70	17	50	35	1	0	63	1.03
20260479--20260507	2	14.5	2	100	0	58	48	0	0	51	1.00
20262265--20262321	24	2.5	22	85	5	69	50	1	0	47	1.11
20282366--20282490	63	2.0	62	100	0	241	36	14	14	33	1.86
20284030--20284089	11	5.4	11	73	11	50	6	21	30	41	1.79
20284033--20284196	23	7.3	23	69	14	99	10	14	28	46	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20284033--20284214	45	4.0	45	84	0	238	10	13	28	46	1.77
20284036--20284211	90	2.0	90	90	0	280	11	13	27	47	1.77
20284041--20284251	90	2.3	90	83	3	219	12	11	28	47	1.76
20289330--20289406	34	2.3	34	86	0	109	11	20	25	41	1.86
20289352--20289426	22	3.4	22	72	17	73	9	18	29	42	1.81
20289433--20289479	23	2.0	23	95	0	85	12	6	31	48	1.66
20297485--20297542	28	2.1	28	81	15	68	27	18	18	34	1.95
20297588--20297633	20	2.3	20	96	0	83	45	21	4	28	1.71
20300921--20300993	35	2.1	35	92	0	119	32	8	30	28	1.86
20305774--20305798	13	1.9	13	100	0	50	36	16	8	40	1.77
20309248--20309325	29	2.6	29	69	13	68	29	3	6	60	1.39
20317336--20317374	15	2.6	15	87	0	51	43	0	15	41	1.46
20317575--20317615	21	1.9	21	85	14	57	65	2	2	29	1.18
20319006--20319048	21	2.0	21	100	0	86	23	20	18	37	1.94
20319783--20319840	27	2.1	27	83	0	71	31	6	5	56	1.47
20319749--20320028	140	2.0	139	99	0	551	40	5	6	47	1.53
20319923--20319980	27	2.1	27	83	0	71	31	6	5	56	1.47
20321347--20321371	10	2.5	10	100	0	50	92	0	8	0	0.40
20335146--20335175	2	15.0	2	92	0	51	46	0	3	50	1.18
20342420--20342445	6	4.3	6	100	0	52	34	50	15	0	1.45
20342468--20342514	3	15.7	3	80	8	51	38	34	23	4	1.74
20342444--20342490	15	3.1	15	93	6	78	42	34	17	6	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20342681--20342749	3	23.0	3	86	5	77	39	34	24	1	1.65
20342680--20342749	12	5.8	12	87	0	86	40	34	24	1	1.64
20343242--20343310	24	2.9	24	86	0	75	34	28	21	14	1.93
20343305--20343387	24	3.5	24	76	3	87	39	32	19	8	1.81
20343304--20343390	21	3.9	21	72	19	68	41	32	18	8	1.79
20343350--20343387	12	3.2	12	82	14	51	39	34	23	2	1.69
20343349--20343384	18	2.0	18	94	0	63	41	33	22	2	1.68
20343482--20343520	15	2.6	15	100	0	78	41	38	20	0	1.53
20355949--20356234	144	2.0	144	95	0	509	28	16	21	33	1.95
20363048--20363087	21	1.9	21	84	0	53	35	22	5	37	1.76
20363238--20363345	31	3.5	30	79	12	103	48	8	7	36	1.62
20363207--20363335	62	2.1	62	85	5	172	47	7	10	34	1.66
20378968--20379009	14	2.9	14	86	10	50	66	7	0	26	1.17
20380919--20381016	40	2.5	40	94	0	169	30	13	18	37	1.89
20380919--20381038	40	3.0	40	90	0	159	30	12	18	38	1.88
20381007--20381159	77	2.0	77	85	0	207	29	15	20	35	1.93
20381004--20381189	27	7.0	27	80	4	191	27	14	22	35	1.93
20382093--20382126	16	2.1	16	88	0	50	55	14	0	29	1.40
20382864--20382903	2	20.0	2	100	0	80	50	0	0	50	1.00
20383020--20383045	2	13.0	2	100	0	52	50	0	0	50	1.00
20383733--20383762	15	2.0	15	93	0	51	13	3	26	56	1.52
20383807--20383839	17	1.9	17	100	0	66	36	21	6	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20384031--20384371	24	14.2	24	77	4	319	20	17	21	41	1.90
20384031--20384371	72	4.7	72	83	2	353	20	17	21	41	1.90
20385453--20385576	32	3.6	32	68	25	101	62	1	5	29	1.27
20385489--20385544	20	2.8	19	73	10	58	66	0	1	30	1.02
20385436--20385611	73	2.4	74	88	9	281	62	1	5	30	1.26
20385764--20385827	15	4.3	15	89	0	92	32	26	6	34	1.82
20386682--20386719	10	3.6	10	86	13	58	26	0	0	73	0.83
20386811--20386848	17	2.3	16	83	16	51	23	0	2	73	0.95
20387753--20387794	19	2.2	20	91	4	68	23	2	7	66	1.28
20398372--20398421	20	2.5	20	78	12	57	26	28	8	38	1.84
20399219--20399305	40	2.2	39	83	4	104	25	20	34	19	1.96
20403286--20403324	9	4.3	9	83	0	51	41	17	10	30	1.83
20403286--20403324	18	2.2	18	95	0	69	41	17	10	30	1.83
20403284--20403445	80	2.0	79	96	2	306	45	8	6	39	1.59
20403366--20403404	18	2.2	18	90	0	60	41	15	10	33	1.81
20403667--20403712	18	2.6	18	92	0	74	47	19	10	21	1.80
20414801--20414825	3	8.3	3	100	0	50	32	0	0	68	0.90
20430987--20431053	19	3.6	18	76	9	62	50	4	2	41	1.37
20444308--20444341	15	2.2	15	89	5	50	11	0	8	79	0.94
20445889--20445972	32	2.7	30	74	16	82	21	11	10	55	1.66
20450198--20450222	13	1.9	13	100	0	50	24	0	8	68	1.16
20450201--20450242	19	2.2	20	83	8	52	33	0	7	59	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20451006--20451051	2	23.0	2	86	0	65	43	0	6	50	1.28
20452560--20452672	60	1.9	60	88	0	172	32	17	9	39	1.83
20455483--20455515	3	11.0	3	93	0	57	0	63	0	36	0.95
20458560--20458616	22	2.6	22	94	0	96	59	3	10	26	1.46
20460389--20460417	14	2.1	14	100	0	58	41	13	37	6	1.72
20461876--20461906	15	2.1	15	100	0	62	32	22	25	19	1.97
20466021--20466069	13	3.8	13	91	5	73	48	0	4	46	1.20
20466021--20466069	2	24.0	2	88	12	73	48	0	4	46	1.20
20472378--20472417	2	20.0	2	100	0	80	50	0	0	50	1.00
20478130--20478348	55	4.0	55	78	5	196	37	6	11	44	1.67
20478130--20478300	27	6.3	27	72	2	117	39	5	11	44	1.63
20478270--20478376	56	1.9	55	83	7	137	39	9	11	40	1.73
20488378--20488408	16	2.0	16	93	6	55	54	6	32	6	1.51
20493675--20493705	16	2.0	16	93	6	55	54	6	32	6	1.51
20497921--20497959	2	19.5	2	100	0	78	48	0	0	51	1.00
20503003--20503028	3	8.7	3	100	0	52	0	30	0	69	0.89
20506156--20506291	70	1.9	70	93	0	236	46	15	16	22	1.84
20512835--20512870	6	6.0	6	93	0	63	2	50	16	30	1.60
20523685--20523720	19	1.9	19	88	5	56	44	0	5	50	1.25
20524502--20524576	22	3.4	22	81	7	89	48	14	8	29	1.72
20528286--20528356	2	37.0	2	87	8	94	49	0	2	46	1.16
20545524--20545580	21	2.7	21	77	0	60	28	15	22	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20545565--20545856	69	4.0	70	80	7	282	27	11	23	36	1.90
20545565--20545822	48	5.3	48	76	12	206	27	11	24	36	1.90
20545565--20545898	26	13.7	26	74	11	228	28	11	23	37	1.89
20545618--20545856	69	3.4	69	84	2	289	27	11	24	36	1.90
20545904--20546055	23	6.6	23	89	0	223	26	13	24	34	1.93
20546066--20546122	21	2.6	22	75	10	64	45	22	10	21	1.82
20548814--20548848	16	2.2	16	90	5	54	17	28	11	42	1.83
20568431--20568479	21	2.3	23	79	13	59	40	2	0	57	1.10
20585158--20585212	25	2.2	24	87	9	76	38	3	1	56	1.28
20586235--20586385	74	2.0	74	100	0	302	56	19	16	7	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66