genome.fa.s6.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  65  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25776738--25776773	18	2.0	18	100	0	72	61	0	5	33	1.19
25788421--25788458	19	2.0	19	89	0	58	47	7	28	15	1.74
25789440--25789469	13	2.3	13	94	0	51	66	6	16	10	1.41
25798962--25799011	2	25.0	2	80	8	57	50	4	44	2	1.32
25798962--25799011	21	2.4	21	86	0	64	50	4	44	2	1.32
25798962--25799011	19	2.6	19	84	6	57	50	4	44	2	1.32
25804568--25804643	2	38.0	2	81	5	82	46	2	51	0	1.15
25804568--25804640	27	2.7	27	84	0	101	46	2	50	0	1.15
25824438--25824568	46	2.8	47	88	4	194	21	17	16	45	1.86
25842378--25842423	19	2.4	19	89	7	67	0	8	4	86	0.68
25858916--25858940	2	12.5	2	100	0	50	48	0	0	52	1.00
25861204--25861274	10	7.0	10	71	19	58	47	0	0	52	1.00
25861359--25861472	22	5.1	22	72	12	79	49	0	4	45	1.28
25861403--25861480	22	3.6	21	72	14	52	46	0	6	47	1.28
25896842--25896873	16	1.9	16	93	6	55	50	0	0	50	1.00
25896843--25896886	17	2.7	16	82	6	52	54	0	2	43	1.12
25897358--25897507	69	2.2	70	85	1	203	38	6	6	48	1.54
25911706--25911750	22	2.0	22	82	0	54	51	6	8	33	1.59
25915190--25915234	21	2.0	22	87	8	65	57	0	2	40	1.11
25956039--25956266	119	1.9	119	86	2	323	26	15	21	36	1.93
25961193--25961291	51	1.9	52	93	2	173	36	22	21	20	1.95
25965838--25965868	6	5.3	6	96	3	55	70	12	16	0	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25968284--25968309	2	13.0	2	100	0	52	50	0	0	50	1.00
25969184--25969236	2	27.0	2	85	11	74	47	0	49	1	1.12
25977422--25977470	18	2.7	18	83	0	62	0	42	2	55	1.11
25977422--25977473	21	2.5	22	81	9	63	0	44	1	53	1.11
25981175--25981566	197	2.0	196	98	0	757	38	13	14	33	1.85
25981551--25981585	2	18.0	2	94	5	63	51	0	0	48	1.00
25983469--25983601	68	2.0	67	91	4	216	36	14	12	36	1.84
25983761--25983787	6	4.5	6	100	0	54	14	18	18	48	1.82
25997397--25997438	22	1.9	22	85	0	57	21	7	23	47	1.75
25997458--25997531	21	3.4	21	79	5	67	28	12	17	41	1.85
25997449--25997531	22	3.8	22	75	12	82	27	12	19	40	1.87
25997558--25997768	26	8.7	26	80	9	184	36	26	11	25	1.90
25997558--25997765	74	2.9	72	82	10	232	37	25	11	25	1.89
25997539--25997709	22	7.3	22	80	13	150	36	29	11	23	1.89
25997761--25997810	21	2.4	21	82	0	73	36	30	18	16	1.92
25997539--25997825	22	12.3	22	75	12	123	37	26	12	23	1.90
25999341--25999511	61	2.8	61	84	0	225	26	27	18	26	1.98
25999613--25999668	29	1.9	30	85	10	80	21	5	7	66	1.37
25999976--26000054	40	2.0	40	94	0	140	17	22	25	34	1.96
26002272--26002318	3	15.7	3	81	0	58	4	23	68	4	1.26
26002269--26002318	21	2.4	21	100	0	100	4	22	68	6	1.29
26003543--26003572	15	1.9	16	93	6	53	63	6	0	30	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26012476--26012513	20	2.0	20	89	5	60	7	7	7	76	1.17
26013964--26014073	56	2.0	56	87	3	159	45	5	6	42	1.52
26014540--26014578	16	2.3	18	86	8	55	74	0	2	23	0.94
26018608--26018646	19	2.1	19	95	0	69	53	0	0	46	1.00
26019752--26019816	19	3.4	19	80	14	64	20	1	3	75	1.02
26019748--26019821	23	3.2	24	78	16	59	21	1	2	74	1.02
26020206--26020256	13	3.8	13	74	23	52	3	19	1	74	1.07
26024265--26024305	20	2.1	19	86	4	55	4	17	9	68	1.35
26025936--26025979	20	2.2	20	84	8	54	50	0	11	38	1.39
26026128--26026160	15	2.2	16	89	10	52	78	0	0	21	0.75
26028106--26028204	24	4.1	24	68	0	72	27	37	20	15	1.92
26028145--26028271	48	2.6	48	84	0	155	24	37	22	14	1.92
26035678--26035862	87	2.1	87	93	2	318	28	22	31	17	1.97
26035843--26035937	12	8.2	12	74	6	70	6	4	53	35	1.46
26035881--26035943	6	10.5	6	87	0	81	4	1	52	41	1.32
26035881--26035939	24	2.5	24	88	0	91	5	1	52	40	1.33
26035846--26035931	30	2.7	32	83	5	104	6	4	53	34	1.49
26035917--26035955	18	2.2	18	85	0	51	0	2	56	41	1.13
26037692--26037733	13	3.3	12	90	9	66	7	2	2	88	0.69
26039707--26039769	12	5.2	12	86	0	81	1	15	58	23	1.46
26039707--26039769	6	10.5	6	89	0	72	1	15	58	23	1.46
26039707--26039771	18	3.6	18	82	0	85	1	15	60	23	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26039870--26039970	30	3.4	30	87	4	150	5	20	20	52	1.67
26039870--26039983	30	3.8	30	84	4	140	5	21	21	52	1.66
26042650--26042807	72	2.2	72	80	0	163	22	37	22	16	1.93
26049673--26049735	15	4.6	14	79	16	78	61	0	38	0	0.96
26049675--26049734	12	5.0	12	82	8	77	61	0	38	0	0.96
26053392--26053431	2	20.0	2	94	0	71	47	0	2	50	1.14
26055137--26055180	2	22.0	2	100	0	88	50	0	0	50	1.00
26097421--26097446	2	13.0	2	100	0	52	0	50	0	50	1.00
26098313--26098370	28	2.0	29	86	6	82	25	0	6	67	1.16
26113915--26113943	4	7.2	4	100	0	58	24	0	75	0	0.80
26124891--26124915	2	12.5	2	100	0	50	0	52	0	48	1.00
26126517--26126698	91	2.0	91	85	0	247	48	14	10	26	1.76
26136385--26136409	3	8.3	3	100	0	50	68	0	32	0	0.90
26149980--26150411	85	5.0	86	97	0	805	28	17	15	38	1.91
26149980--26150411	171	2.5	172	97	1	805	28	17	15	38	1.91
26156061--26156093	2	16.5	2	93	0	57	48	0	3	48	1.17
26173108--26173162	2	28.0	2	92	3	94	49	1	0	49	1.11
26174300--26174354	6	9.2	6	93	0	92	0	65	1	32	1.03
26174564--26174624	2	31.0	2	96	3	115	49	0	0	50	1.00
26174712--26174753	21	2.0	21	100	0	84	9	23	19	47	1.78
26187431--26187467	4	9.2	4	93	0	65	51	27	0	21	1.48
26195251--26195336	2	42.0	2	90	4	127	47	1	1	46	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26211489--26211514	6	4.3	6	100	0	52	0	69	0	30	0.89
26224660--26224686	4	6.8	4	100	0	54	0	25	0	74	0.83
26241949--26241974	3	8.7	3	100	0	52	65	0	0	34	0.93
26244722--26244808	25	3.5	25	100	0	174	27	19	17	35	1.94
26251932--26252016	41	2.1	41	93	0	143	40	17	20	22	1.92
26267450--26267531	31	2.6	31	96	0	146	20	17	21	40	1.91
26271128--26271565	118	3.7	117	85	2	538	21	21	28	28	1.99
26271433--26271510	31	2.5	30	76	13	77	21	20	32	25	1.98
26271128--26271565	236	1.9	235	85	1	617	21	21	28	28	1.99
26272930--26273165	116	2.0	117	85	2	323	27	31	16	23	1.96
26275305--26275443	31	4.5	31	86	0	170	35	20	17	26	1.94
26276117--26276514	47	8.5	47	85	0	467	22	30	19	27	1.98
26276460--26276664	58	3.6	58	82	4	218	24	35	15	23	1.94
26276638--26276681	23	1.9	23	95	0	79	25	38	11	25	1.89
26281746--26281835	46	2.0	46	93	6	157	28	20	11	40	1.86
26284117--26284229	58	1.9	58	90	0	181	47	23	13	15	1.81
26286889--26287005	58	2.0	58	89	0	180	47	20	16	16	1.83
26294095--26294139	22	2.1	21	84	8	56	31	0	11	57	1.33
26294105--26294233	10	12.3	10	68	15	57	31	2	17	48	1.60
26294150--26294189	21	1.9	21	90	10	64	40	0	15	45	1.46
26294201--26294338	32	4.5	30	73	19	90	28	2	14	54	1.55
26294323--26294426	27	3.6	27	71	24	95	34	0	10	54	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26294412--26294504	20	4.3	23	76	10	65	29	1	10	59	1.38
26294289--26294461	61	2.9	59	78	10	172	31	0	10	57	1.34
26294448--26294814	10	37.6	10	66	18	68	29	1	13	55	1.48
26294448--26294814	20	18.8	20	69	16	98	29	1	13	55	1.48
26294448--26294512	30	2.1	31	83	13	82	27	3	10	58	1.47
26294520--26294814	20	14.9	20	70	17	122	28	1	13	55	1.48
26294524--26294601	41	1.9	40	89	7	122	23	1	12	62	1.37
26294425--26294685	98	2.6	99	79	8	239	28	1	12	57	1.44
26294584--26294638	19	2.8	18	76	13	56	27	1	14	56	1.49
26294880--26294943	29	2.2	30	86	8	87	26	1	15	56	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66