genome.fa.s6.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  19  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6383287--6383311	2	12.5	2	100	0	50	52	0	0	48	1.00
6392721--6392800	33	2.5	33	79	4	92	41	8	13	36	1.76
6395430--6395579	80	1.9	79	81	4	185	44	8	6	40	1.62
6395988--6396140	76	2.0	76	92	5	256	47	19	11	21	1.80
6398299--6398343	22	2.0	22	91	0	72	33	20	11	35	1.88
6399843--6399871	2	14.5	2	100	0	58	48	0	0	51	1.00
6399912--6399940	2	14.5	2	100	0	58	48	0	0	51	1.00
6399842--6399974	69	2.0	66	94	5	225	36	7	6	49	1.56
6403767--6403867	36	2.8	36	80	1	112	31	24	13	29	1.94
6404784--6404846	26	2.4	26	76	10	65	26	1	9	61	1.36
6404791--6404834	21	2.1	21	83	8	54	25	0	9	65	1.21
6406783--6406878	41	2.3	41	98	0	183	34	29	17	18	1.94
6408003--6408045	16	2.7	16	82	10	52	62	11	0	25	1.29
6408679--6408706	5	5.6	5	100	0	56	0	17	0	82	0.68
6411650--6411674	9	2.8	9	100	0	50	0	8	0	92	0.40
6418632--6418688	26	2.2	26	81	6	62	63	8	1	26	1.34
6418793--6418921	30	4.4	28	77	15	100	31	20	11	35	1.89
6418864--6418961	31	3.2	31	81	4	119	30	24	12	32	1.92
6420402--6420439	20	1.9	20	94	0	67	60	13	10	15	1.59
6422166--6422204	20	2.1	17	86	13	51	69	0	0	30	0.89
6423168--6423196	11	2.5	12	88	11	51	75	0	0	24	0.80
6423171--6423196	11	2.4	11	100	0	52	76	0	0	23	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6425475--6425499	9	2.8	9	100	0	50	80	0	0	20	0.72
6428337--6428444	38	2.9	37	82	6	128	43	23	12	21	1.85
6431848--6432007	53	3.0	53	86	0	212	36	15	15	32	1.89
6432258--6432295	15	2.4	17	87	12	55	55	2	0	42	1.14
6432823--6432930	57	1.9	57	88	0	162	39	24	12	24	1.89
6433559--6433606	19	2.6	18	84	12	62	43	0	0	56	0.99
6433567--6433616	19	2.6	19	93	0	82	50	0	0	50	1.00
6433919--6433994	27	2.7	29	81	6	84	57	0	2	39	1.12
6433941--6433994	27	1.9	29	88	7	85	64	0	0	35	0.94
6454604--6454757	81	1.9	82	90	1	247	22	17	16	44	1.87
6456632--6456679	20	2.4	20	78	0	60	45	4	18	31	1.68
6473174--6473287	45	2.4	45	83	12	140	45	0	5	48	1.31
6476211--6476242	15	2.2	14	94	5	55	21	3	0	75	0.95
6476313--6476357	2	22.5	2	90	0	72	48	4	0	46	1.22
6476516--6476571	2	28.5	2	85	10	80	46	1	0	51	1.11
6482884--6482921	19	2.0	19	94	0	67	42	28	0	28	1.56
6493207--6493236	2	15.0	2	100	0	60	50	0	0	50	1.00
6495708--6495732	13	1.9	13	100	0	50	52	0	0	48	1.00
6512656--6512694	21	1.9	20	94	5	69	38	12	15	33	1.85
6528458--6528482	13	1.9	13	100	0	50	44	0	8	48	1.32
6530682--6530800	29	4.1	29	82	1	141	47	7	25	20	1.76
6530687--6530800	58	2.0	58	87	0	165	46	7	24	21	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6530987--6531029	18	2.4	18	76	0	50	32	11	13	41	1.81
6531791--6531837	2	23.5	2	100	0	94	48	0	0	51	1.00
6538787--6538824	12	2.8	14	80	19	53	71	7	0	21	1.11
6543216--6543240	13	1.9	13	100	0	50	52	0	0	48	1.00
6545270--6545302	17	1.9	17	88	11	50	42	15	3	39	1.62
6545466--6545617	28	5.3	28	79	10	146	37	11	10	40	1.77
6545455--6545615	59	2.8	60	82	8	174	39	11	9	38	1.75
6547518--6547977	229	2.0	230	93	0	796	34	17	14	33	1.91
6550505--6550596	27	3.4	28	83	8	127	27	11	16	44	1.82
6550687--6550773	46	1.9	45	81	6	104	54	10	5	29	1.58
6551831--6551959	2	68.0	2	80	13	148	49	1	0	48	1.10
6551950--6552181	119	1.9	119	89	1	358	34	16	17	31	1.92
6555905--6555948	23	1.9	23	90	0	70	61	11	11	15	1.57
6562475--6562507	2	16.5	2	100	0	66	48	0	0	51	1.00
6564487--6564536	21	2.4	21	83	12	59	68	0	0	32	0.90
6565188--6565221	16	2.0	18	88	11	54	41	0	0	58	0.98
6572344--6572559	109	2.0	110	82	2	265	31	15	21	31	1.94
6575458--6575519	24	2.7	23	73	26	60	25	4	0	69	1.08
6576912--6577001	43	2.1	43	89	0	135	16	37	22	23	1.93
6578100--6578298	101	2.0	100	96	4	357	52	3	14	30	1.56
6578270--6578300	2	15.5	2	100	0	62	51	0	0	48	1.00
6578659--6578788	25	5.3	24	67	5	73	24	31	26	16	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6578652--6578791	49	2.9	48	84	6	183	24	33	25	16	1.96
6597773--6597814	3	14.0	3	84	0	57	33	7	0	59	1.25
6597773--6597814	15	2.8	15	92	0	66	33	7	0	59	1.25
6598022--6598059	2	19.0	2	100	0	76	50	0	0	50	1.00
6600347--6600438	44	2.1	44	89	4	141	25	21	22	30	1.99
6601662--6601718	20	2.7	22	79	15	59	17	36	7	38	1.77
6602965--6603076	2	56.0	2	82	7	138	47	0	4	47	1.22
6603183--6603285	39	2.6	39	83	8	113	21	17	38	22	1.93
6613937--6613966	2	15.5	2	93	6	53	50	0	0	50	1.00
6614729--6614783	27	2.0	27	85	0	74	38	7	18	36	1.78
6618285--6618374	20	4.7	20	72	15	73	41	0	1	57	1.06
6624176--6624231	28	2.0	28	89	6	87	39	1	1	57	1.20
6626928--6626973	18	2.4	19	82	10	58	56	10	21	10	1.64
6627287--6627869	291	2.0	290	94	1	1042	36	16	12	35	1.85
6631620--6631739	58	2.1	57	95	1	213	38	17	8	35	1.80
6642154--6642184	15	2.1	15	94	5	55	54	0	25	19	1.44
6642755--6642808	27	2.0	26	82	10	65	27	14	9	48	1.75
6643691--6643830	39	3.7	39	78	6	119	29	34	10	26	1.89
6644960--6644997	4	9.5	4	83	11	51	0	31	0	68	0.90
6644944--6644999	24	2.3	25	84	12	80	0	32	0	67	0.91
6644948--6644997	15	3.2	15	84	15	66	0	32	0	68	0.90
6648410--6648442	17	1.9	17	93	0	57	12	0	21	66	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6648410--6648449	17	2.3	17	86	4	53	15	2	17	65	1.39
6655096--6655120	8	3.1	8	100	0	50	52	12	12	24	1.72
6657755--6657883	65	2.0	64	100	0	249	34	21	26	17	1.95
6663334--6663362	15	1.9	15	100	0	58	10	27	6	55	1.59
6681636--6681674	19	2.1	19	90	4	62	23	7	15	53	1.67
6681905--6681939	2	17.5	2	93	0	61	48	0	0	51	1.00
6682395--6682531	62	2.2	62	96	0	247	38	20	23	17	1.93
6683316--6683354	16	2.4	16	84	12	53	46	0	2	51	1.14
6683345--6683450	36	3.1	34	79	11	112	49	1	1	47	1.23
6683367--6683427	25	2.6	22	72	22	54	49	3	1	45	1.28
6683333--6683452	11	11.2	11	66	28	55	50	1	1	46	1.21
6683432--6683481	23	2.2	23	83	16	61	42	0	2	56	1.11
6683333--6683491	22	7.4	22	67	17	68	48	1	2	47	1.23
6683510--6683562	24	2.2	24	83	6	63	58	0	3	37	1.16
6683520--6683551	10	3.1	10	91	8	55	59	0	3	37	1.13
6683534--6683563	13	2.2	14	94	5	53	50	0	3	46	1.18
6683551--6683600	22	2.3	22	89	0	73	48	0	0	52	1.00
6686511--6686559	2	24.5	2	100	0	98	48	0	0	51	1.00
6700939--6701000	29	2.1	29	84	0	79	29	24	11	35	1.90
6700947--6701011	29	2.2	29	83	0	85	26	27	12	33	1.92
6703916--6704162	80	3.1	80	87	3	329	35	23	8	31	1.86
6706236--6706276	14	2.8	16	75	24	54	43	19	9	26	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6706507--6706612	31	3.5	31	79	3	108	34	21	19	23	1.96
6707545--6707569	6	4.2	6	100	0	50	64	0	0	36	0.94
6708292--6708426	31	4.5	31	78	14	149	31	17	25	25	1.97
6708274--6708458	87	2.1	89	83	3	230	32	17	23	27	1.96
6713403--6713452	25	2.0	25	84	4	64	30	30	10	30	1.90
6713814--6713888	25	2.9	25	76	7	69	36	16	12	36	1.85
6713842--6713919	29	2.8	28	82	3	86	46	15	11	26	1.80
6713818--6714013	27	7.3	27	74	7	123	41	19	8	30	1.81
6717053--6717330	144	1.9	143	85	5	382	32	11	18	37	1.87
6722323--6722388	30	2.2	30	84	7	82	40	9	16	33	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66