genome.fa.s6.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  33  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11333483--11333596	35	3.3	35	72	9	119	24	13	27	35	1.92
11333501--11333620	35	3.5	34	70	11	102	30	13	25	30	1.93
11340463--11340548	23	3.7	23	98	0	154	16	27	9	46	1.77
11341261--11341381	37	3.3	38	83	6	160	30	9	36	23	1.86
11341600--11341655	21	2.7	21	91	0	76	23	23	23	30	1.99
11353260--11353324	28	2.3	28	94	0	112	9	21	16	52	1.72
11353373--11353435	25	2.5	25	89	0	90	17	17	12	52	1.75
11353507--11353554	22	2.2	22	92	7	80	8	41	12	37	1.73
11353713--11353799	34	2.6	34	94	0	156	35	18	13	32	1.90
11355583--11355704	37	3.3	38	88	5	187	30	9	35	24	1.88
11355761--11355889	65	2.0	64	100	0	249	37	1	13	46	1.53
11357169--11357205	11	3.5	11	78	14	51	0	32	0	67	0.91
11367376--11367489	41	2.7	42	80	2	149	26	21	31	21	1.98
11367367--11367497	42	3.1	42	80	2	165	24	22	31	21	1.98
11386557--11386597	21	1.9	22	90	5	66	26	21	24	26	2.00
11386781--11386912	43	3.1	43	81	2	149	20	36	18	24	1.95
11397769--11397909	39	3.6	39	85	4	133	20	23	20	35	1.96
11397812--11397909	39	2.5	39	91	3	153	20	21	22	35	1.96
11402758--11402860	38	2.6	39	84	6	120	23	17	36	22	1.94
11404391--11404425	14	2.5	14	100	0	70	20	34	22	22	1.97
11405979--11406024	17	2.6	17	86	6	65	34	8	0	56	1.30
11419521--11419570	23	2.1	24	82	10	59	56	2	22	20	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11420591--11420653	2	31.5	2	100	0	126	49	0	0	50	1.00
11420839--11420957	37	3.2	37	90	4	195	25	10	38	26	1.87
11423769--11423801	2	16.5	2	100	0	66	48	0	0	51	1.00
11423868--11423957	42	2.1	42	89	0	144	21	34	22	22	1.97
11428725--11428937	43	5.0	43	88	0	309	23	31	18	25	1.97
11429501--11429538	20	1.9	20	88	0	58	42	5	28	23	1.76
11434517--11434635	43	2.8	43	83	5	134	22	19	36	21	1.95
11434650--11434694	23	2.0	23	100	0	90	22	6	44	26	1.77
11436903--11437008	38	2.7	40	79	2	126	23	38	14	23	1.91
11440551--11440610	30	2.0	30	100	0	120	33	36	13	16	1.88
11443050--11443171	43	2.8	43	87	4	167	23	18	39	18	1.92
11443157--11443219	20	3.2	20	90	2	101	25	3	41	30	1.71
11451426--11451547	43	2.8	43	86	0	172	22	32	17	27	1.96
11452888--11453100	86	2.5	86	89	1	302	24	17	34	23	1.96
11452901--11453103	43	4.7	43	82	9	252	25	17	34	22	1.96
11460490--11460535	21	2.2	20	84	7	56	17	21	4	56	1.58
11460495--11460535	21	1.9	22	90	5	66	19	24	4	51	1.66
11462038--11462133	38	2.5	39	81	10	108	22	41	14	20	1.89
11464595--11464857	132	2.0	131	99	0	508	31	7	26	33	1.85
11466793--11466831	20	2.0	20	94	0	69	46	15	0	38	1.46
11471316--11471657	43	8.0	42	80	7	391	26	19	33	21	1.97
11471316--11471660	129	2.7	128	87	5	473	26	19	33	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11473463--11473506	20	2.1	21	91	4	72	45	9	20	25	1.80
11474618--11474656	19	2.1	19	95	0	69	30	15	28	25	1.96
11477436--11477486	21	2.4	20	81	12	57	21	19	23	35	1.96
11477425--11477508	43	1.9	44	80	2	98	22	14	25	38	1.92
11477493--11477555	23	2.7	23	97	2	117	20	9	30	39	1.84
11478597--11478667	33	2.2	33	81	0	79	18	25	33	22	1.96
11478845--11478995	58	2.6	58	92	1	239	30	17	21	31	1.96
11479352--11479473	42	2.9	43	80	2	120	21	35	17	26	1.95
11479509--11479536	2	14.0	2	100	0	56	50	0	0	50	1.00
11481526--11481571	2	23.0	2	100	0	92	50	0	0	50	1.00
11491604--11491643	20	2.0	20	85	0	53	15	35	7	42	1.75
11492479--11492591	37	3.1	36	82	10	138	30	8	33	27	1.87
11498894--11498936	23	1.9	22	85	4	59	13	30	6	48	1.69
11499753--11499865	37	3.1	37	92	5	192	25	10	38	25	1.88
11512813--11512853	12	3.5	12	83	12	50	63	0	29	7	1.21
11515320--11515358	19	2.1	19	90	9	62	53	0	12	33	1.39
11517487--11517570	2	41.5	2	82	11	100	47	2	2	46	1.28
11517958--11518012	25	2.2	25	83	6	67	30	16	25	27	1.96
11529999--11530068	33	2.1	33	89	0	104	31	31	14	22	1.94
11535932--11535994	20	3.2	20	90	2	101	30	41	3	25	1.71
11535997--11536102	43	2.5	43	90	3	160	18	38	19	22	1.93
11541403--11542077	340	2.0	339	94	0	1188	26	28	22	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11544112--11544146	2	17.5	2	87	0	52	45	0	5	48	1.26
11544149--11544213	20	3.2	20	82	4	76	32	38	1	27	1.66
11544216--11544319	43	2.4	43	90	3	156	18	37	20	24	1.94
11554491--11554537	22	2.0	24	84	15	64	19	25	6	48	1.72
11555722--11555855	42	3.2	42	84	5	171	23	32	16	26	1.96
11558523--11558555	2	16.5	2	93	0	57	48	0	0	51	1.00
11559558--11559595	19	2.1	18	90	5	58	42	10	34	13	1.78
11560178--11560205	5	5.6	5	100	0	56	60	21	0	17	1.36
11563974--11564138	60	2.8	60	90	0	240	34	20	22	23	1.97
11564493--11564615	43	2.9	44	86	4	171	21	37	17	23	1.94
11566919--11567065	35	4.2	35	85	5	183	44	12	6	35	1.69
11569054--11569098	14	3.1	14	80	6	54	60	11	4	24	1.49
11570600--11570724	42	3.0	42	89	0	187	21	20	33	24	1.97
11573559--11573593	2	17.5	2	93	0	61	48	0	2	48	1.16
11575222--11575271	23	2.1	24	82	10	59	56	2	22	20	1.53
11576326--11576451	43	3.0	43	85	3	166	25	16	34	23	1.96
11576893--11576932	19	2.1	19	85	0	53	32	25	20	22	1.98
11594196--11594327	67	1.9	69	80	8	155	31	20	15	31	1.94
11600883--11601025	31	4.8	30	72	10	89	36	13	19	30	1.90
11600855--11601034	28	6.2	28	70	11	119	37	13	19	29	1.90
11601026--11601114	37	2.4	37	86	3	117	34	8	21	34	1.85
11602802--11602847	18	2.6	18	92	0	74	47	19	10	21	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11605934--11606114	59	3.2	54	71	22	142	1	41	3	53	1.29
11606211--11606273	3	20.7	3	82	12	58	0	26	0	73	0.84
11606435--11606488	16	3.5	15	78	12	56	27	5	0	66	1.13
11606847--11606889	19	2.3	18	84	4	59	44	2	0	53	1.13
11609091--11609147	22	2.5	22	94	2	96	24	28	28	19	1.98
11610652--11610759	51	2.1	51	96	0	198	36	17	25	21	1.95
11627782--11627906	42	3.0	42	87	0	187	23	33	22	20	1.97
11629774--11629806	16	2.1	16	94	0	57	42	15	9	33	1.78
11631544--11631598	21	2.7	20	82	2	65	38	12	14	34	1.84
11632641--11632814	68	2.6	68	71	7	154	35	10	20	33	1.86
11633308--11633359	20	2.6	20	78	0	50	36	9	21	32	1.86
11639349--11639389	21	1.9	22	90	5	66	24	21	24	29	1.99
11642613--11642646	2	17.0	2	87	0	50	44	0	2	52	1.16
11642687--11642819	42	3.2	41	79	6	142	20	36	20	23	1.95
11642715--11642840	42	3.0	41	81	4	153	21	34	19	24	1.97
11644662--11644856	42	4.6	42	86	0	246	21	35	21	22	1.96
11650641--11650675	11	3.3	11	88	8	54	65	11	22	0	1.24
11653229--11653272	20	2.2	20	95	0	79	40	4	18	36	1.71
11653237--11653279	5	8.6	5	92	0	68	37	2	20	39	1.66
11667069--11667222	42	3.7	42	84	0	200	22	33	20	22	1.97
11667056--11667222	84	2.0	84	89	0	253	23	33	19	23	1.97
11668447--11668480	10	3.3	10	95	4	59	20	0	0	79	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11668445--11668482	16	2.3	16	86	13	51	18	0	0	81	0.69
11668554--11668791	92	2.6	91	86	4	336	36	28	10	23	1.88
11668865--11668957	11	8.3	11	68	27	54	0	30	3	66	1.07
11671484--11671523	19	2.1	19	85	0	53	20	25	27	27	1.99
11671663--11671792	61	2.1	61	82	2	163	33	24	20	20	1.97
11672056--11672147	42	2.2	43	88	2	132	25	31	17	26	1.97
11683283--11683336	23	2.3	24	90	6	85	50	1	1	46	1.23
11683197--11683488	135	2.1	136	83	6	374	57	3	6	32	1.42
11686490--11686524	12	2.9	12	91	0	52	8	0	88	2	0.61
11692133--11692297	77	2.1	78	85	3	217	38	14	6	40	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66