genome.fa.s6.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  60  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22843802--22843863	27	2.2	28	88	2	90	56	0	0	43	0.99
22843844--22843922	25	3.2	25	92	5	126	46	2	0	50	1.14
22843873--22843931	15	4.3	15	77	20	74	42	3	0	54	1.17
22843910--22843979	22	3.2	22	78	11	74	41	0	0	58	0.98
22843799--22844021	25	9.0	25	74	14	101	47	1	0	51	1.09
22866777--22866813	7	5.3	7	100	0	74	13	43	0	43	1.44
22866786--22866829	12	3.5	12	87	12	54	18	40	0	40	1.50
22866836--22866860	2	12.5	2	100	0	50	0	52	0	48	1.00
22881119--22881166	2	24.0	2	91	0	78	45	0	4	50	1.21
22881749--22881922	95	1.8	93	82	6	224	28	18	10	41	1.84
22890210--22890242	3	11.0	3	100	0	66	33	0	33	33	1.58
22903812--22903851	20	2.1	19	86	9	55	17	12	0	70	1.18
22914931--22914979	19	2.5	20	80	6	57	63	6	28	2	1.30
22917692--22917716	2	12.5	2	100	0	50	48	0	52	0	1.00
22929741--22929797	30	1.9	30	89	3	89	56	3	3	36	1.34
22944721--22944748	14	2.0	14	100	0	56	35	14	7	42	1.73
22973716--22973844	42	3.1	42	82	6	138	17	22	27	33	1.96
22978067--22978116	26	2.0	26	84	7	68	34	4	2	60	1.27
22978063--22978121	25	2.5	22	76	15	57	30	3	1	64	1.20
22978130--22978192	32	2.0	32	87	0	90	31	3	4	60	1.33
22979793--22979855	33	1.9	33	90	0	99	11	49	4	34	1.59
22988801--22988870	2	35.0	2	97	0	113	50	4	0	45	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22994482--22994515	2	17.0	2	100	0	68	50	0	0	50	1.00
22994591--22994621	2	15.5	2	100	0	62	48	0	0	51	1.00
22996844--22996887	23	2.0	22	81	4	52	40	0	6	52	1.28
23001829--23001853	2	12.5	2	100	0	50	52	48	0	0	1.00
23001923--23001956	2	17.0	2	93	0	59	50	47	0	2	1.16
23001829--23002023	103	1.9	103	98	0	381	41	23	17	17	1.91
23005874--23005906	11	3.0	11	83	16	50	51	0	3	45	1.16
23005874--23005918	22	2.0	22	86	0	63	51	4	2	42	1.34
23008590--23008653	6	10.2	6	75	9	56	45	34	20	0	1.51
23012494--23012530	2	18.5	2	94	0	65	54	0	0	45	1.00
23028776--23028809	10	3.3	11	88	12	54	52	0	0	47	1.00
23031875--23032096	2	116.5	2	73	17	161	49	6	1	41	1.38
23031875--23031987	22	5.2	22	92	4	178	50	6	0	43	1.27
23039460--23039844	127	3.0	127	99	0	752	31	16	22	30	1.95
23057220--23057249	13	2.3	13	100	0	60	36	10	30	23	1.87
23067513--23067578	26	2.6	24	79	13	69	39	1	3	56	1.24
23079218--23079424	45	4.6	45	82	2	254	25	20	19	34	1.96
23079342--23079493	69	2.2	69	90	2	234	24	20	19	35	1.96
23079391--23079438	24	2.0	24	91	0	78	18	18	22	39	1.92
23079394--23079446	24	2.2	24	86	0	70	20	18	22	37	1.94
23079415--23079538	45	2.8	44	83	2	158	25	20	19	34	1.96
23079508--23079558	24	2.1	24	96	0	93	25	15	19	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23079304--23079603	114	2.6	114	84	5	392	24	20	19	35	1.96
23117080--23117118	13	3.3	13	73	26	50	56	0	0	43	0.99
23117152--23117195	13	3.4	13	75	12	54	27	0	0	72	0.85
23125883--23125912	14	2.1	14	100	0	60	66	6	6	20	1.38
23130191--23130261	37	1.9	36	94	2	124	30	7	32	29	1.84
23136524--23136565	17	2.4	19	76	19	54	52	0	4	42	1.22
23140272--23140352	29	3.0	26	70	19	67	24	6	0	69	1.11
23140276--23140335	29	2.0	31	83	9	79	23	5	0	71	1.05
23140276--23140338	23	2.7	23	82	4	65	23	4	0	71	1.05
23140449--23140526	10	7.6	10	77	9	68	20	2	1	75	0.99
23144818--23144852	12	2.8	12	91	4	52	11	0	0	88	0.51
23144817--23144852	15	2.5	15	91	8	58	11	0	0	88	0.50
23144825--23144862	19	2.0	20	84	5	51	15	2	2	78	0.97
23151153--23151188	18	2.0	18	94	0	63	63	0	0	36	0.94
23151154--23151210	28	2.0	29	83	13	73	63	0	0	36	0.95
23153962--23154023	2	32.5	2	80	9	76	51	1	0	46	1.10
23157995--23158048	29	1.9	29	88	7	85	44	0	0	55	0.99
23173925--23173959	17	2.1	17	94	0	61	85	0	14	0	0.59
23174315--23174359	21	2.1	21	83	0	54	28	15	17	37	1.91
23174415--23174502	26	3.3	25	73	14	77	51	5	5	37	1.50
23190329--23190544	103	2.1	102	83	2	263	33	26	12	26	1.93
23190563--23190607	23	2.0	23	86	0	63	31	31	22	15	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23197246--23197285	21	1.9	21	85	10	55	37	7	5	50	1.53
23197503--23197542	21	1.9	21	85	10	55	37	7	5	50	1.53
23197146--23197659	257	2.0	257	97	0	958	31	15	8	43	1.77
23198724--23198768	15	3.1	14	84	9	63	15	0	4	80	0.87
23198724--23198761	14	2.6	14	91	4	58	13	0	5	81	0.85
23198734--23198779	9	5.1	9	78	17	51	19	0	4	76	0.96
23198727--23198782	18	3.1	18	71	19	53	19	0	3	76	0.93
23199858--23199950	22	4.2	21	76	10	73	65	0	33	1	1.00
23199846--23199965	52	2.3	52	80	16	135	64	0	35	0	1.00
23199847--23199952	22	4.8	22	72	18	71	65	0	33	0	1.00
23199982--23200033	24	2.3	22	81	15	61	73	5	21	0	1.04
23199985--23200032	19	2.5	19	86	3	60	75	6	18	0	1.01
23200376--23200470	38	2.5	36	75	11	91	72	2	7	17	1.17
23200641--23200673	7	4.9	7	92	7	59	75	0	0	24	0.80
23200641--23200673	13	2.4	14	95	5	59	75	0	0	24	0.80
23202029--23202081	13	4.2	13	81	11	65	79	0	1	18	0.83
23202014--23202083	26	2.6	27	76	17	74	77	0	2	20	0.90
23229946--23229989	21	2.1	21	82	0	52	59	13	9	18	1.60
23258545--23258611	35	1.9	35	84	6	91	44	4	22	28	1.72
23260410--23260484	28	2.7	28	85	2	98	37	10	12	40	1.77
23260438--23260640	82	2.5	82	76	14	211	33	14	12	39	1.83
23260670--23260710	21	2.0	21	95	0	73	36	24	17	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23260625--23260760	66	2.1	66	86	5	186	31	21	16	30	1.95
23260624--23260871	111	2.2	111	89	2	374	33	20	13	31	1.92
23260691--23260805	45	2.6	45	87	2	160	32	20	13	33	1.92
23260736--23260875	66	2.1	66	87	0	208	35	22	12	30	1.91
23263236--23263497	139	1.9	138	95	3	474	39	8	13	38	1.74
23265463--23265505	21	2.0	21	86	8	61	37	20	11	30	1.89
23275031--23275060	2	15.0	2	100	0	60	50	0	50	0	1.00
23278780--23278822	21	2.0	21	100	0	86	9	37	25	27	1.87
23283404--23283432	3	9.7	3	100	0	58	34	0	31	34	1.58
23292603--23292656	24	2.2	24	81	15	67	62	0	0	37	0.95
23296530--23296561	16	2.1	16	94	5	57	62	0	3	34	1.11
23296545--23296600	26	2.2	26	80	6	60	57	3	0	39	1.16
23296604--23296660	26	2.1	27	80	3	62	61	1	3	33	1.23
23305181--23305231	22	2.3	22	96	0	93	33	11	15	39	1.84
23310609--23310655	22	2.1	22	84	0	58	44	6	10	38	1.65
23314000--23314122	65	1.9	65	83	3	158	21	21	24	32	1.98
23314349--23314407	2	29.5	2	96	0	109	50	0	1	47	1.11
23349528--23349832	23	13.6	23	65	13	75	50	1	2	44	1.25
23349521--23349649	22	5.8	23	68	14	65	54	0	3	42	1.16
23349671--23349739	22	3.2	21	69	15	59	46	2	0	50	1.16
23349521--23349833	45	7.0	45	71	12	180	51	1	2	44	1.25
23349836--23349876	17	2.5	17	85	14	52	53	0	2	43	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23353450--23353501	26	2.0	26	100	0	104	30	23	19	26	1.98
23357644--23357674	14	2.2	14	100	0	62	35	29	9	25	1.88
23359001--23359045	23	2.0	23	95	0	81	28	20	13	37	1.90
23360386--23360418	2	16.5	2	93	0	57	48	3	0	48	1.17
23389807--23389831	7	3.6	7	100	0	50	16	44	24	16	1.86
23392119--23392152	9	3.7	9	84	7	50	44	0	2	52	1.16
23412679--23412763	2	43.0	2	82	11	95	42	2	3	50	1.32
23415126--23415188	27	2.3	28	83	2	74	39	15	7	36	1.77
23451630--23451821	76	2.5	75	83	1	251	32	12	14	40	1.84
23451690--23451951	121	2.2	121	85	0	362	33	12	14	40	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66