genome.fa.s6.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  56  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20587209--20587263	22	2.5	22	90	3	83	0	25	1	72	0.94
20587894--20587956	21	3.0	21	76	15	67	3	23	0	73	0.98
20592279--20592324	18	2.6	18	92	0	74	21	10	19	47	1.80
20592972--20593006	15	2.3	15	85	0	52	42	5	2	48	1.41
20593206--20593279	35	2.1	35	87	2	105	27	0	10	62	1.28
20594830--20594864	18	1.9	18	88	0	52	68	2	0	28	1.04
20595697--20595745	21	2.2	22	82	7	55	44	2	2	51	1.24
20596113--20596146	16	2.1	16	88	0	50	52	5	2	38	1.41
20596587--20596626	16	2.5	17	84	12	57	42	10	5	42	1.60
20596801--20596857	17	3.5	17	75	18	50	47	5	1	45	1.35
20609702--20609737	2	18.0	2	100	0	72	50	0	0	50	1.00
20613785--20613833	20	2.5	20	75	0	53	30	16	20	32	1.94
20617333--20617380	19	2.6	19	86	3	71	58	0	2	39	1.10
20618313--20618503	34	5.6	33	83	6	211	31	9	30	28	1.89
20618313--20618503	69	2.8	68	84	4	233	31	9	30	28	1.89
20619248--20619430	60	3.0	59	86	5	251	26	19	32	21	1.97
20626946--20626978	2	16.5	2	100	0	66	51	48	0	0	1.00
20637014--20637056	19	2.3	19	83	0	50	51	4	0	44	1.22
20653606--20653682	18	4.4	18	68	18	56	37	0	0	62	0.96
20653614--20653684	18	4.2	18	68	18	62	33	0	0	66	0.92
20653719--20653752	11	3.1	11	91	0	59	52	0	0	47	1.00
20653719--20653750	6	5.7	6	85	14	50	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20653709--20653752	22	2.0	21	91	4	70	47	0	0	52	1.00
20653880--20653949	30	2.3	30	87	0	104	58	0	2	38	1.13
20673698--20673759	32	1.9	32	93	0	106	45	8	17	29	1.77
20673697--20673750	16	3.4	16	71	19	58	46	5	20	27	1.73
20691069--20691101	7	4.9	7	88	7	50	27	39	15	18	1.90
20691069--20691101	13	2.4	14	90	5	50	27	39	15	18	1.90
20706128--20706174	23	2.0	23	87	0	67	31	17	6	44	1.73
20730837--20730890	1	54.0	1	77	0	54	1	88	3	5	0.67
20730826--20730890	29	2.2	30	80	2	78	7	84	3	4	0.85
20730837--20730897	15	4.1	14	83	8	68	1	86	3	8	0.73
20736509--20736538	3	9.7	3	92	7	51	63	0	3	33	1.11
20739835--20739891	27	2.1	27	96	0	105	14	19	40	26	1.89
20759219--20759276	29	2.0	28	86	3	80	36	13	17	32	1.89
20773673--20773702	15	2.0	15	100	0	60	40	0	40	20	1.52
20791017--20791076	14	3.8	15	72	24	52	28	0	0	71	0.86
20791022--20791077	17	3.2	16	75	25	51	26	0	0	73	0.84
20791000--20791077	35	2.2	36	80	12	92	26	0	1	71	0.93
20791017--20791073	29	1.9	30	89	3	89	28	0	0	71	0.86
20791017--20791061	15	3.1	15	78	18	58	26	0	0	73	0.84
20791014--20791077	19	3.6	17	82	16	76	28	0	0	71	0.86
20806364--20806407	19	2.4	18	81	7	54	54	0	0	45	0.99
20824722--20824746	3	8.3	3	100	0	50	68	0	32	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20827145--20827182	18	2.1	18	85	9	51	47	2	0	50	1.15
20827610--20827649	21	2.0	20	85	5	53	55	5	12	27	1.58
20831290--20831365	38	2.0	39	92	2	127	18	18	9	53	1.70
20832179--20832222	18	2.6	17	86	13	65	75	0	0	25	0.81
20832185--20832246	18	3.5	18	76	14	67	72	0	1	25	0.94
20845739--20845778	21	1.9	21	89	0	62	50	2	5	42	1.37
20858587--20859049	29	16.2	29	74	7	295	37	16	11	35	1.84
20858600--20858833	85	2.7	84	75	10	224	37	16	11	34	1.85
20858587--20859049	114	4.1	112	76	6	396	37	16	11	35	1.84
20859071--20859176	29	3.7	29	70	2	88	37	13	7	41	1.72
20870741--20870774	17	2.0	17	88	11	52	32	8	23	35	1.86
20875477--20876194	345	2.1	344	83	5	906	42	6	6	44	1.55
20876154--20876186	15	2.1	17	88	11	52	54	6	0	39	1.25
20879785--20879815	6	5.2	6	96	0	53	16	22	0	61	1.34
20882397--20882469	30	2.4	30	83	0	92	46	2	12	38	1.56
20882412--20882457	15	3.1	15	77	0	56	50	0	6	43	1.28
20883164--20883236	4	18.2	4	78	10	78	50	0	45	4	1.20
20883148--20883203	24	2.3	24	87	9	78	53	0	42	3	1.18
20895248--20895281	17	1.9	18	94	5	61	67	0	2	29	1.05
20898885--20898911	11	2.5	11	100	0	54	51	14	11	22	1.73
20915524--20916647	354	3.2	342	83	7	1328	43	6	7	41	1.59
20915523--20916662	341	3.3	340	80	8	1262	43	6	7	41	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20924149--20924205	2	29.0	2	96	3	107	49	0	0	50	1.00
20927722--20928052	150	2.2	150	99	0	653	36	10	10	42	1.73
20928706--20928784	36	2.2	34	76	10	86	27	16	17	37	1.91
20929402--20929429	14	2.0	14	100	0	56	14	35	21	28	1.92
20944503--20944558	29	1.9	29	92	0	94	30	19	17	32	1.95
20946979--20947037	28	2.1	28	81	12	68	45	8	6	38	1.61
20965830--20965867	20	1.9	20	88	0	58	23	13	5	57	1.56
20968648--20968674	12	2.2	12	100	0	54	22	11	22	44	1.84
20974889--20974952	27	2.4	28	76	15	71	46	0	0	53	1.00
20974909--20974976	15	4.3	14	75	23	55	51	0	0	48	1.00
20974909--20975258	22	15.5	22	67	20	102	42	1	1	54	1.18
20974898--20975221	127	2.7	117	80	12	361	42	1	1	54	1.19
20974939--20975221	127	2.3	117	87	7	379	42	1	1	54	1.21
20975138--20975265	30	4.0	30	67	22	82	40	0	2	57	1.12
20976410--20976619	105	2.0	105	97	0	393	27	13	14	45	1.82
20988034--20988287	127	2.0	127	97	0	481	17	22	22	37	1.94
20988837--20988866	2	15.0	2	92	0	51	0	46	0	53	1.00
20990360--20990405	23	2.0	23	95	0	83	43	15	17	23	1.87
20990778--20990815	20	1.9	20	94	0	67	31	7	10	50	1.66
20990780--20990827	20	2.4	20	85	0	60	31	8	8	52	1.61
21007074--21007141	18	3.9	17	73	9	50	38	1	10	50	1.46
21027109--21027156	22	2.3	22	78	7	55	33	4	0	62	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21031142--21031180	15	2.6	15	88	8	53	46	0	2	51	1.14
21031917--21031996	42	1.9	41	92	2	133	26	8	1	63	1.31
21052242--21052267	2	13.0	2	100	0	52	0	50	0	50	1.00
21058191--21058225	16	2.1	17	94	5	63	71	0	0	28	0.86
21058468--21058517	21	2.4	21	75	15	50	44	6	0	50	1.26
21059258--21059299	5	8.6	5	84	10	52	78	0	21	0	0.75
21060438--21060577	69	2.0	69	95	0	253	27	20	23	29	1.99
21066408--21066441	3	11.3	3	100	0	68	32	0	0	67	0.91
21073726--21073773	3	16.0	3	82	8	62	64	0	35	0	0.94
21082038--21082081	2	22.0	2	100	0	88	50	0	0	50	1.00
21084852--21084889	2	19.5	2	94	5	69	0	52	0	47	1.00
21086043--21086077	17	2.0	17	88	5	52	37	0	2	60	1.12
21112135--21112175	21	2.0	21	85	0	55	34	7	9	48	1.64
21118191--21118247	29	2.0	29	89	6	89	45	29	7	17	1.75
21129171--21129386	27	8.0	27	84	4	283	45	3	11	38	1.58
21129180--21129386	54	3.8	54	90	0	315	46	3	11	39	1.56
21129170--21129386	81	2.7	81	89	2	328	45	3	11	39	1.58
21131148--21131196	21	2.4	21	82	3	64	34	8	16	40	1.78
21132634--21132666	2	16.5	2	100	0	66	0	48	0	51	1.00
21133514--21133618	38	2.7	40	85	5	144	22	40	16	20	1.90
21133736--21133774	2	19.5	2	100	0	78	51	0	0	48	1.00
21135339--21135365	3	9.0	3	100	0	54	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21135364--21135402	3	12.7	3	94	5	69	33	2	0	64	1.08
21136903--21137054	71	2.2	71	98	1	297	26	10	19	44	1.83
21140677--21140793	56	2.1	56	93	0	198	35	20	2	41	1.66
21141855--21141898	22	2.0	21	86	4	61	79	0	11	9	0.93
21143698--21143739	16	2.4	18	81	18	54	7	57	0	35	1.26
21156995--21157042	2	24.0	2	100	0	96	50	0	0	50	1.00
21179880--21179916	16	2.2	17	81	18	51	2	21	0	75	0.92
21209426--21209454	12	2.3	13	94	5	51	51	17	0	31	1.45
21210399--21210572	88	2.0	88	97	0	330	32	10	9	48	1.69
21210409--21210591	88	2.1	88	89	4	280	32	10	9	46	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66