genome.fa.s10.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  10  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3754841--3754872	5	6.4	5	100	0	64	40	0	0	59	0.97
3759071--3759304	132	1.8	126	83	5	306	36	8	4	50	1.53
3761809--3761834	2	13.0	2	100	0	52	50	0	50	0	1.00
3763634--3763669	19	1.9	18	88	5	54	27	0	2	69	1.02
3765317--3765372	18	3.3	17	78	14	62	1	25	0	73	0.93
3766256--3766285	15	1.9	16	93	6	53	86	0	13	0	0.57
3766256--3766286	16	1.9	16	93	0	53	87	0	12	0	0.55
3766872--3766909	19	2.0	19	85	10	51	81	2	0	15	0.80
3767421--3767481	8	7.6	8	75	17	56	73	1	0	24	0.92
3767421--3767478	21	2.7	21	78	7	64	74	1	0	24	0.92
3767420--3767479	15	3.8	15	81	16	68	73	1	0	25	0.93
3767047--3767477	214	2.0	214	79	6	471	41	10	15	32	1.81
3773731--3773767	1	37.0	1	94	0	65	0	0	97	0	0.04
3775019--3775045	12	2.2	12	100	0	54	55	7	14	22	1.64
3779210--3779240	2	15.5	2	93	0	53	48	0	0	51	1.00
3786319--3786385	33	2.0	33	91	0	107	31	34	19	14	1.92
3789609--3789633	13	1.9	13	100	0	50	44	8	8	40	1.63
3792921--3793209	158	1.8	158	98	0	560	38	16	9	35	1.81
3795072--3795120	16	3.0	16	77	13	55	38	0	0	61	0.96
3795071--3795120	17	3.0	17	80	11	59	38	0	0	62	0.96
3795197--3795272	30	2.5	30	89	8	102	38	5	0	56	1.22
3795209--3795272	30	2.1	30	94	5	112	35	1	0	62	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3795383--3795432	21	2.4	21	80	6	57	50	2	2	46	1.24
3795498--3795531	10	3.3	10	84	8	50	55	2	0	41	1.15
3795529--3795584	21	2.8	19	74	10	67	60	0	0	39	0.97
3797859--3798249	197	2.0	197	95	0	701	39	20	15	24	1.91
3805123--3805152	3	10.0	3	100	0	60	66	0	0	33	0.92
3817120--3817179	30	2.0	30	83	0	75	40	8	6	45	1.61
3817236--3817313	33	2.4	33	76	4	86	37	8	17	35	1.82
3820693--3821035	59	5.8	59	88	0	479	36	18	12	33	1.88
3820693--3821030	119	2.9	117	88	3	489	36	17	12	33	1.88
3820695--3821026	178	1.9	178	88	0	511	36	18	12	33	1.87
3821876--3821900	7	3.6	7	100	0	50	0	0	12	88	0.53
3826698--3826758	30	2.1	30	81	3	70	31	3	18	47	1.64
3829691--3829784	45	2.1	45	83	0	116	44	5	5	44	1.49
3837614--3837653	14	2.8	15	85	14	66	5	40	0	55	1.22
3837618--3837651	13	2.7	12	86	13	50	5	44	0	50	1.26
3854496--3854540	17	2.6	17	85	0	54	4	17	2	75	1.07
3857504--3857528	2	12.5	2	100	0	50	48	0	0	52	1.00
3859052--3859082	3	10.3	3	100	0	62	32	32	0	35	1.58
3862257--3862298	2	21.5	2	95	4	77	50	0	50	0	1.00
3862780--3862811	13	2.4	14	85	15	50	46	3	6	43	1.44
3866295--3866322	2	14.0	2	100	0	56	0	50	0	50	1.00
3871763--3871789	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3874885--3874964	2	42.0	2	76	9	78	46	1	3	47	1.28
3879728--3879786	30	2.0	30	93	6	102	33	3	10	52	1.52
3881851--3881931	13	6.7	13	75	22	79	44	1	2	51	1.22
3883240--3883277	4	9.5	4	83	11	51	21	0	0	78	0.74
3883753--3883804	26	2.0	27	85	10	74	25	7	1	65	1.30
3884494--3884530	14	2.6	14	100	0	74	10	0	27	62	1.28
3884953--3884993	15	2.9	14	86	10	57	29	0	0	70	0.87
3886299--3886385	30	3.0	28	79	9	102	58	6	1	33	1.32
3887500--3887531	2	16.0	2	100	0	64	0	0	50	50	1.00
3890837--3891264	219	2.0	219	89	2	655	33	12	21	32	1.91
3893849--3894060	107	2.0	107	94	0	370	33	15	16	34	1.89
3897084--3897111	2	14.0	2	100	0	56	0	50	0	50	1.00
3898721--3898765	22	2.1	21	83	4	54	53	4	2	40	1.33
3898980--3899020	21	2.0	21	85	0	55	46	2	4	46	1.37
3910203--3910293	46	2.0	46	95	0	164	31	8	14	45	1.75
3910381--3910405	13	1.9	13	100	0	50	16	12	16	56	1.68
3917475--3917523	24	1.9	26	84	12	66	55	16	26	2	1.52
3918710--3918740	7	4.4	7	95	0	53	16	0	0	83	0.64
3918710--3918745	14	2.6	14	86	0	54	19	2	0	77	0.88
3929644--3929677	16	2.2	16	89	5	52	58	5	8	26	1.51
3932744--3933179	81	5.3	82	80	6	374	42	11	13	33	1.80
3932838--3932890	24	2.3	23	78	15	56	39	11	13	35	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3932744--3933111	163	2.3	162	82	5	422	43	11	12	32	1.79
3932810--3933179	163	2.3	164	80	9	393	41	11	13	33	1.81
3933106--3933199	29	3.3	29	85	4	111	37	12	12	37	1.82
3942697--3942726	2	15.0	2	100	0	60	50	0	0	50	1.00
3944773--3944847	29	2.7	29	83	4	91	36	4	12	48	1.59
3944845--3944918	26	3.0	23	81	15	69	31	16	12	40	1.85
3944934--3945117	69	2.7	68	88	4	250	28	19	16	34	1.94
3945027--3945072	24	1.9	24	95	0	83	26	15	15	43	1.85
3945044--3945303	45	5.6	45	70	15	165	30	16	17	36	1.92
3945051--3945389	187	1.8	187	85	1	484	32	14	15	38	1.87
3945216--3945338	45	2.7	45	79	0	129	34	17	13	35	1.88
3955976--3956000	2	12.5	2	100	0	50	0	48	0	52	1.00
3956000--3956039	2	21.5	2	85	14	59	52	0	0	47	1.00
3956008--3956039	9	3.7	9	95	4	57	53	0	0	46	1.00
3956000--3956049	11	4.8	11	81	18	63	52	2	0	46	1.12
3957996--3958042	21	2.2	23	82	17	66	48	4	2	44	1.34
3959701--3959733	16	2.0	17	88	5	50	51	3	0	45	1.16
3963272--3963298	3	9.0	3	100	0	54	66	0	0	33	0.92
3975578--3975703	64	2.0	65	91	1	209	17	19	24	38	1.92
3981513--3981572	31	2.0	31	83	9	79	63	13	6	16	1.50
3982467--3982583	57	2.0	59	88	3	175	48	17	16	17	1.81
3987579--3987615	4	9.2	4	90	0	56	54	24	2	18	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4001778--4001821	14	2.9	16	83	12	58	29	2	0	68	1.02
4001778--4001809	15	2.1	15	94	5	55	34	0	0	65	0.93
4002264--4002293	3	10.0	3	100	0	60	33	0	0	66	0.92
4003046--4003154	35	3.2	34	70	12	89	47	16	11	23	1.80
4003332--4003396	29	2.2	29	86	0	85	20	24	7	47	1.76
4005976--4006388	203	2.0	202	86	4	573	32	16	13	37	1.87
4009414--4009466	18	2.9	19	69	11	56	45	7	28	18	1.77
4011629--4011721	31	3.0	29	84	10	82	35	4	2	58	1.30
4011646--4011721	31	2.4	30	89	8	116	38	1	1	59	1.14
4012128--4012177	14	3.6	14	74	12	50	58	0	0	42	0.98
4012140--4012191	17	2.8	19	82	14	72	55	1	0	42	1.10
4012192--4012285	22	4.3	22	77	5	91	43	2	3	51	1.29
4013988--4014160	59	2.9	59	88	0	265	30	12	9	46	1.74
4015141--4015203	33	2.0	31	84	6	81	44	0	0	55	0.99
4015171--4015275	56	2.0	51	92	7	165	49	0	0	48	1.07
4015230--4015295	23	2.8	24	79	6	62	50	0	3	46	1.16
4015535--4015584	21	2.4	21	80	3	57	18	8	4	70	1.28
4015708--4015750	22	1.9	23	90	4	70	53	2	0	44	1.13
4019659--4019683	7	3.6	7	100	0	50	32	12	16	40	1.84
4026514--4026563	23	2.1	23	82	17	59	44	6	6	44	1.53
4031724--4031843	60	2.0	59	88	1	177	35	16	10	37	1.82
4040092--4040170	40	2.0	40	94	0	140	17	22	25	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4042751--4042829	40	2.0	40	89	0	122	17	20	25	36	1.94
4050293--4050354	30	2.1	30	87	0	88	53	8	8	30	1.59
4060131--4060265	52	2.5	53	83	8	175	43	2	17	35	1.65
4060131--4060261	56	2.4	55	83	9	171	43	3	17	35	1.65
4061063--4061089	4	6.8	4	100	0	54	22	0	0	77	0.76
4061636--4061676	19	2.2	19	86	4	57	31	2	2	63	1.20
4073798--4073827	10	3.0	10	95	0	51	20	16	43	20	1.88
4074824--4074853	2	15.0	2	100	0	60	50	0	50	0	1.00
4084265--4084317	18	3.2	16	76	23	56	43	1	3	50	1.30
4087254--4087283	15	1.9	16	93	6	53	56	0	0	43	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59