genome.fa.s10.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  2  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19491--19610	21	5.8	20	77	10	107	31	1	19	47	1.59
19269--20150	438	2.0	437	99	0	1748	30	8	13	47	1.73
19928--20048	10	11.7	10	80	10	118	31	1	19	47	1.59
19928--20045	31	3.8	30	79	10	114	30	1	19	48	1.59
19823--19973	72	2.1	74	84	2	198	21	4	15	58	1.55
19949--20038	32	2.9	31	77	12	94	34	1	17	46	1.56
19929--20048	21	5.8	20	77	10	107	31	1	19	47	1.59
25678--25789	10	10.6	10	71	15	75	32	3	13	50	1.58
25680--25789	11	10.3	11	70	14	61	31	3	12	51	1.57
25702--25768	32	2.1	32	88	5	100	31	4	10	53	1.55
25711--25789	22	3.7	20	77	16	70	29	3	11	55	1.52
26068--26128	20	3.1	19	77	11	59	39	3	11	45	1.57
26193--26424	10	22.2	10	69	8	115	33	3	14	48	1.62
26193--26424	21	11.1	20	72	8	115	33	3	14	48	1.62
26196--26766	10	54.9	10	66	14	106	33	4	13	48	1.63
26282--26369	31	2.8	31	81	5	88	32	4	14	47	1.65
26296--26392	11	9.2	11	73	15	53	37	4	13	45	1.63
26248--26392	32	4.6	32	77	9	111	33	4	13	48	1.64
26323--26463	53	2.7	53	80	5	153	36	3	9	51	1.51
26060--26484	221	1.9	220	79	6	466	33	4	12	48	1.62
26592--26633	11	3.7	11	90	3	57	40	4	2	52	1.35
26580--26643	22	3.0	21	76	13	67	35	4	6	53	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26625--26675	21	2.4	22	80	3	59	27	1	13	56	1.48
26738--26775	20	1.9	20	94	0	67	31	0	7	60	1.25
26800--26886	21	4.2	21	75	11	90	27	6	17	48	1.72
26967--27044	10	7.7	10	78	7	59	29	0	14	56	1.38
26955--27030	31	2.5	31	84	0	89	27	0	13	59	1.35
27038--27093	20	2.8	20	79	17	62	19	5	5	69	1.28
27272--27362	20	4.6	20	69	13	62	28	5	14	51	1.64
27327--27388	21	3.0	20	78	4	61	24	6	20	48	1.73
27853--27887	19	1.9	17	88	11	52	2	22	0	74	0.95
28239--28271	18	1.9	17	88	11	50	84	3	6	6	0.84
28271--28359	26	3.4	26	78	9	92	52	0	1	46	1.07
28279--28372	8	11.4	8	71	9	55	52	1	1	45	1.15
28320--28408	47	1.9	46	81	6	108	44	1	2	51	1.21
28316--28411	8	12.2	8	69	20	51	46	1	2	50	1.20
28328--28412	16	5.3	16	74	14	61	44	1	2	51	1.21
28474--28566	15	6.4	15	72	14	70	51	0	1	47	1.07
28453--28516	15	4.5	14	75	13	51	60	0	0	39	0.97
28457--28555	40	2.4	39	82	11	110	53	0	1	45	1.07
28480--28564	25	3.3	26	79	12	86	50	0	1	48	1.08
28489--28577	25	3.7	24	80	10	83	49	1	1	48	1.16
28531--28580	26	1.9	26	91	0	82	46	2	0	52	1.12
29088--29149	21	2.9	22	78	4	63	37	3	9	50	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29212--29349	20	6.8	19	70	18	82	27	5	11	55	1.56
29262--29810	10	53.0	10	63	17	74	29	5	14	49	1.66
29472--29511	21	1.9	21	89	0	62	30	5	17	47	1.69
29716--29811	21	4.6	20	71	19	70	30	7	12	50	1.67
29663--29755	42	2.2	43	76	5	100	30	4	16	49	1.64
29726--29808	11	7.6	11	73	16	66	31	8	9	50	1.65
29717--29806	22	4.2	22	74	16	73	28	7	11	52	1.65
29727--29808	32	2.5	31	82	5	83	31	8	9	50	1.66
36088--36125	19	2.0	19	89	0	58	44	26	0	28	1.54
36763--36820	30	1.9	31	89	3	91	41	1	10	46	1.48
36810--36850	20	2.1	20	90	4	66	29	4	12	53	1.58
37298--37361	10	6.3	10	76	16	60	26	3	21	48	1.65
37270--37350	21	3.9	21	72	15	60	27	6	17	49	1.70
37372--37426	21	2.6	21	79	2	56	30	9	10	49	1.69
37342--37464	53	2.3	53	77	8	117	29	8	12	49	1.70
37700--37779	21	3.8	21	72	8	54	23	6	16	53	1.65
38008--38226	10	21.2	10	66	15	72	31	5	17	46	1.69
38195--38307	20	5.6	18	71	21	57	28	1	14	55	1.49
38238--38285	21	2.3	21	78	7	53	29	0	12	58	1.35
38771--38857	10	8.5	10	71	9	52	25	4	14	55	1.59
38758--38818	21	2.9	22	82	4	72	29	4	11	54	1.57
39245--39328	21	4.0	21	75	6	71	28	8	17	45	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39788--39851	31	2.1	31	85	8	87	29	7	17	45	1.76
39945--40161	21	10.3	21	65	14	56	29	5	16	48	1.70
40034--40171	10	13.2	10	70	13	64	31	4	15	49	1.64
40079--40171	32	2.9	33	75	13	95	32	3	11	52	1.54
40078--40171	21	4.4	22	75	15	81	31	4	11	52	1.57
40298--40346	21	2.3	22	78	3	55	28	4	18	48	1.66
40309--40355	21	2.3	20	82	7	58	25	6	19	48	1.72
40444--40525	21	3.9	21	76	12	71	31	7	13	47	1.70
41068--41109	21	2.0	22	85	4	59	23	4	21	50	1.68
41305--41342	20	1.9	20	88	0	58	23	0	13	63	1.30
41204--42036	342	2.5	330	82	6	962	29	5	13	51	1.64
41698--41764	21	3.2	20	79	12	71	31	4	16	47	1.66
41738--41778	21	2.0	20	85	4	55	29	9	19	41	1.83
41834--41953	21	5.8	20	69	23	70	28	5	12	53	1.61
41802--41860	30	1.9	32	86	6	86	25	6	16	50	1.70
41800--41967	10	16.1	10	65	15	72	28	5	15	50	1.66
42209--42264	10	5.5	10	73	12	51	28	0	14	57	1.38
42194--42370	31	5.8	31	69	14	100	30	2	13	53	1.52
42479--42525	21	2.2	21	77	7	51	29	4	10	55	1.53
42531--42571	21	2.0	21	90	0	64	29	0	19	51	1.47
42659--42924	11	25.6	10	64	17	53	27	4	16	51	1.64
42396--42924	10	51.5	10	63	17	97	28	4	15	50	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43074--43131	30	1.9	31	89	3	91	22	5	20	51	1.67
43116--43189	21	3.4	21	83	5	67	28	5	6	59	1.45
43098--43226	53	2.5	51	78	7	141	26	5	11	56	1.56
43128--43189	21	2.9	21	80	2	70	29	3	6	61	1.37
43075--43228	11	14.6	11	67	12	65	26	5	13	54	1.60
43245--43290	20	2.2	21	84	3	58	30	2	6	60	1.34
43368--43432	10	6.4	10	75	8	51	26	6	20	47	1.73
43375--43548	10	16.9	10	66	20	56	30	4	16	48	1.66
43548--43579	12	2.7	12	100	0	64	43	6	9	40	1.62
43581--43621	20	2.0	20	95	0	73	34	0	4	60	1.18
43595--43683	41	2.2	42	80	10	103	26	2	7	62	1.34
43586--43659	10	7.4	9	74	18	51	25	1	5	67	1.20
43586--43670	20	4.2	20	70	19	61	27	1	5	65	1.22
43586--43683	30	3.2	29	78	14	101	27	2	7	63	1.32
43793--43838	21	2.2	21	84	0	56	30	4	8	56	1.49
44787--44820	10	3.3	10	87	4	50	20	0	0	79	0.73
44783--44861	16	5.1	14	75	17	59	18	3	1	75	1.02
44783--44862	31	2.5	31	82	9	90	18	5	1	75	1.06
44783--44860	8	9.9	8	67	27	51	19	3	1	75	1.02
46739--46771	14	2.4	14	95	5	59	15	0	12	72	1.12
46998--47035	3	12.7	3	88	0	58	34	5	0	60	1.19
46992--47047	9	6.2	9	79	8	51	33	12	0	53	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51145--51230	2	43.0	2	89	4	129	45	1	2	50	1.22
100123--100274	77	2.0	74	91	6	243	39	22	19	19	1.92
107250--107311	31	2.0	31	93	0	106	37	17	12	32	1.88
111637--111680	20	2.2	20	95	0	79	54	6	13	25	1.63
111871--111943	37	1.9	38	91	2	121	42	19	8	30	1.80
111856--111943	37	2.4	37	85	9	119	43	19	6	30	1.77
117486--117512	5	5.4	5	100	0	54	81	0	18	0	0.69
118180--118217	3	12.7	3	100	0	76	34	0	0	65	0.93
119969--120032	26	2.5	26	92	0	101	50	10	28	10	1.71
127481--127545	25	2.6	25	92	2	105	4	44	4	46	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59