genome.fa.s10.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  12  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4498353--4498394	2	21.0	2	100	0	84	50	0	0	50	1.00
4501256--4501403	74	2.0	74	100	0	296	41	16	9	32	1.80
4503068--4503092	2	12.5	2	100	0	50	52	0	0	48	1.00
4505063--4505108	22	2.1	22	87	0	65	47	28	6	17	1.72
4505534--4505589	25	2.2	25	87	0	76	12	26	7	53	1.64
4509841--4509889	2	25.0	2	95	4	91	51	0	0	48	1.00
4509625--4510161	268	2.0	265	96	1	995	42	10	17	29	1.83
4510109--4510155	2	25.0	2	87	12	73	51	0	0	48	1.00
4511085--4511671	59	9.9	59	85	1	701	33	12	17	36	1.87
4511862--4511922	28	2.2	28	85	11	81	72	1	3	22	1.09
4512627--4512699	4	19.0	4	73	18	57	76	0	23	0	0.78
4512625--4512708	6	13.7	6	76	17	66	75	0	25	0	0.81
4512627--4512705	27	2.9	27	78	10	90	75	0	24	0	0.80
4512621--4512710	38	2.4	36	85	14	128	73	0	26	0	0.84
4513040--4513084	2	22.5	2	100	0	90	51	0	0	48	1.00
4515234--4515281	25	1.9	25	86	0	69	31	8	10	50	1.66
4526106--4527202	332	3.2	337	81	7	1240	40	7	6	44	1.60
4527170--4527202	15	2.1	17	88	11	52	54	6	0	39	1.25
4530960--4530989	2	15.0	2	92	0	51	46	0	3	50	1.18
4532752--4532842	4	22.8	4	97	0	101	39	0	9	50	1.36
4532792--4532860	4	17.0	4	90	3	93	28	0	20	50	1.48
4538979--4539058	40	2.0	40	97	0	151	20	17	18	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4548014--4548071	29	1.9	31	82	6	75	41	22	8	27	1.83
4549666--4550213	217	2.5	218	85	1	751	25	18	17	38	1.92
4554542--4554608	28	2.4	27	83	14	82	56	13	4	25	1.56
4555422--4555468	20	2.5	19	83	10	60	10	10	2	76	1.10
4556058--4556124	28	2.5	28	92	4	111	40	10	7	41	1.67
4557680--4557790	34	3.1	34	70	18	109	31	24	16	27	1.96
4557643--4557808	72	2.3	72	91	0	269	32	24	16	25	1.96
4557652--4557771	38	3.3	37	70	17	106	31	22	17	28	1.97
4557693--4557805	34	3.2	34	68	22	97	30	25	16	26	1.97
4568245--4568276	14	2.3	14	100	0	64	0	12	0	87	0.54
4571772--4572219	218	2.1	219	87	2	650	27	17	17	38	1.92
4580196--4580233	3	12.7	3	100	0	76	34	31	0	34	1.58
4584744--4584803	2	31.0	2	76	6	61	46	0	1	51	1.10
4586891--4586920	2	15.0	2	92	0	51	53	0	0	46	1.00
4589595--4589632	17	2.2	17	90	4	58	47	0	0	52	1.00
4589621--4589681	12	4.9	12	72	20	54	60	0	0	39	0.97
4589630--4589672	20	2.2	20	87	4	61	60	0	0	39	0.97
4589621--4589693	25	2.9	26	86	13	116	57	0	0	42	0.98
4589623--4589703	32	2.5	32	79	18	87	56	0	0	43	0.99
4589623--4589707	7	13.0	7	70	25	62	55	0	0	44	0.99
4589682--4589735	27	2.0	27	89	7	83	38	1	1	57	1.20
4589735--4589776	18	2.3	19	80	12	52	69	4	0	26	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4604933--4604965	17	1.9	17	88	11	50	0	3	30	66	1.06
4611577--4611653	38	2.0	38	87	0	109	27	10	14	48	1.76
4612197--4612495	63	4.8	63	94	1	496	47	10	28	13	1.76
4612287--4612455	36	5.2	36	62	23	122	47	8	29	14	1.74
4612448--4612598	51	3.0	50	88	4	200	44	15	29	11	1.81
4616554--4616613	29	2.1	29	100	0	120	35	16	13	35	1.88
4638308--4638351	18	2.4	18	84	0	61	43	11	9	36	1.72
4638575--4638614	2	20.0	2	100	0	80	50	0	0	50	1.00
4638682--4638729	18	2.7	18	86	0	69	52	0	0	47	1.00
4646503--4646527	11	2.3	11	100	0	50	44	0	8	48	1.32
4649489--4649523	5	7.0	5	96	0	61	0	0	57	42	0.99
4666027--4666329	152	2.0	150	96	3	556	40	6	12	40	1.69
4666382--4666447	2	36.0	2	82	17	90	51	0	0	48	1.00
4666382--4666450	21	3.1	22	87	8	104	52	0	0	47	1.00
4666382--4666450	27	2.7	25	89	10	97	52	0	0	47	1.00
4666382--4666451	29	2.5	28	90	4	106	52	0	0	47	1.00
4667131--4667169	2	19.5	2	100	0	78	48	0	0	51	1.00
4667746--4667770	9	2.8	9	100	0	50	8	0	0	92	0.40
4683955--4684039	29	2.9	29	80	0	116	18	23	8	49	1.74
4684543--4685469	244	3.8	242	84	5	1102	39	14	19	26	1.90
4688561--4688628	29	2.4	28	80	2	73	44	17	7	30	1.76
4691275--4691321	19	2.4	20	78	3	51	10	8	2	78	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4695403--4695431	13	2.2	13	100	0	58	41	31	0	27	1.56
4696311--4696352	18	2.3	18	84	8	59	52	0	4	42	1.22
4697565--4697603	2	19.5	2	94	0	69	48	0	2	48	1.15
4699760--4701205	249	5.9	249	82	6	1500	39	13	19	27	1.89
4713062--4713104	22	1.9	21	90	9	59	30	0	0	69	0.88
4716135--4716176	2	21.0	2	85	0	57	47	4	2	45	1.36
4740382--4740423	17	2.5	17	88	7	59	33	21	11	33	1.90
4740637--4740684	22	2.2	21	89	10	71	12	14	0	72	1.11
4741949--4741989	21	2.0	21	90	4	66	24	9	2	63	1.37
4747858--4747882	12	2.1	12	100	0	50	40	16	8	36	1.77
4757806--4757858	20	2.7	20	80	11	63	26	28	9	35	1.87
4757928--4757961	15	2.3	15	89	0	50	2	11	2	82	0.89
4758683--4758716	2	17.0	2	100	0	68	50	0	0	50	1.00
4758834--4758939	38	2.7	38	88	2	149	19	16	41	22	1.90
4771285--4771340	24	2.3	24	90	0	85	50	14	14	21	1.78
4778522--4779587	143	7.5	143	80	4	963	36	13	16	33	1.88
4778648--4779587	286	3.3	285	81	3	1129	37	13	16	33	1.87
4780705--4780735	14	2.2	14	94	0	53	45	9	6	38	1.63
4794826--4794859	17	2.0	17	94	0	59	26	0	0	73	0.83
4803059--4803095	3	12.3	3	100	0	74	32	0	0	67	0.91
4804228--4804254	2	13.5	2	100	0	54	48	0	0	51	1.00
4806951--4806998	16	3.1	17	74	17	50	50	2	0	47	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4810083--4810343	141	1.8	142	95	0	470	47	6	8	37	1.59
4811738--4811837	42	2.3	42	86	10	132	55	3	2	40	1.27
4811774--4811866	22	4.4	21	75	21	88	54	1	2	41	1.19
4811772--4811866	42	2.3	42	85	7	122	55	1	2	41	1.18
4812223--4812327	42	2.5	41	83	13	126	55	1	1	40	1.22
4812979--4813025	18	2.5	20	80	13	64	46	2	0	51	1.13
4812973--4813025	18	2.9	18	80	11	63	47	1	0	50	1.12
4812981--4813093	45	2.4	47	86	5	149	46	0	4	47	1.28
4814542--4814748	96	2.2	93	83	5	265	15	36	10	37	1.83
4816524--4816548	2	12.5	2	100	0	50	52	0	48	0	1.00
4817633--4817667	16	2.1	17	89	5	54	37	11	0	51	1.38
4817650--4817733	43	2.0	41	86	4	114	27	9	3	59	1.45
4818276--4818323	2	25.0	2	81	8	55	50	2	0	45	1.13
4818158--4818437	154	1.8	151	81	9	341	48	3	7	39	1.49
4818357--4818388	15	2.1	15	94	0	55	40	0	6	53	1.26
4826948--4827021	37	2.0	37	100	0	148	35	37	10	16	1.83
4828072--4828124	24	2.2	25	82	3	63	35	1	0	62	1.06
4828210--4828267	22	2.8	21	80	17	59	51	1	0	46	1.11
4829055--4829101	22	2.1	23	88	4	69	34	4	10	51	1.56
4832305--4832344	21	1.9	21	84	0	53	50	20	7	22	1.73
4832664--4832716	26	2.1	25	82	10	63	49	3	9	37	1.53
4832845--4832900	29	1.9	29	85	0	76	55	1	10	32	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4839320--4839372	24	2.2	24	83	3	63	0	83	5	9	0.78
4841851--4841884	2	17.5	2	93	6	61	50	0	0	50	1.00
4844677--4844720	23	2.0	22	81	4	52	38	2	6	52	1.41
4844788--4844881	45	2.1	45	86	7	129	46	4	2	46	1.34
4844856--4844909	18	2.9	18	81	15	65	50	1	1	46	1.23
4857979--4858012	13	2.6	13	95	0	59	26	14	20	38	1.91
4862007--4862667	219	3.0	218	91	1	1013	26	17	25	30	1.97
4865777--4865833	30	1.9	30	96	0	105	42	10	10	36	1.74
4873721--4874384	219	3.0	220	90	2	973	27	17	25	29	1.98
4880524--4880562	20	2.0	20	90	5	62	53	2	0	43	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59