genome.fa.s10.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  35  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12771907--12772035	42	3.1	41	80	6	143	29	18	29	22	1.97
12772100--12772139	2	20.0	2	84	0	53	45	0	7	47	1.31
12772544--12772580	19	1.9	19	94	0	65	29	24	21	24	1.99
12775672--12775723	26	1.9	25	85	14	68	63	3	0	32	1.12
12789764--12789840	39	2.0	39	89	0	118	27	33	11	27	1.91
12789765--12789865	39	2.6	39	82	0	112	26	33	13	25	1.94
12792136--12792229	43	2.2	43	88	5	147	27	15	31	24	1.96
12795377--12795475	39	2.6	39	87	3	139	31	9	33	26	1.87
12795453--12795499	24	2.0	24	87	8	69	23	4	40	31	1.74
12818090--12818173	25	3.4	25	86	0	123	16	22	13	47	1.81
12818062--12818123	31	2.0	32	87	3	90	16	22	12	48	1.80
12818338--12818411	34	2.2	34	82	0	85	36	25	6	31	1.82
12827503--12827535	11	3.0	11	90	0	57	69	0	0	30	0.88
12829710--12829983	73	3.8	73	90	1	408	23	20	16	39	1.92
12838898--12838945	15	3.3	15	80	11	55	0	27	0	72	0.84
12839044--12839089	19	2.4	19	85	0	65	45	8	26	19	1.79
12856555--12856664	43	2.6	43	82	5	134	17	35	22	24	1.95
12862573--12862675	35	2.9	36	82	10	122	29	33	15	22	1.95
12862650--12862818	52	3.0	52	76	18	194	29	29	16	24	1.97
12862666--12862800	64	2.1	64	92	1	225	28	28	17	25	1.98
12864088--12864256	85	2.0	84	100	0	329	36	15	7	40	1.75
12866895--12867106	54	3.9	54	83	5	270	24	39	13	22	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12867091--12867158	21	3.3	21	69	8	59	23	30	23	22	1.99
12867077--12867169	40	2.3	40	92	0	159	20	37	20	21	1.94
12867292--12867318	2	13.5	2	100	0	54	48	0	0	51	1.00
12870568--12870675	35	3.2	34	72	15	98	29	10	25	34	1.89
12870553--12870723	67	2.6	68	85	5	242	26	13	24	35	1.93
12870874--12870912	18	2.1	19	85	4	53	15	7	7	69	1.35
12877158--12877199	20	2.2	19	84	16	52	30	0	26	42	1.55
12877194--12877275	37	2.2	37	88	0	119	29	10	34	25	1.90
12877540--12877593	21	2.5	22	87	3	74	33	24	16	25	1.96
12880685--12880738	28	2.0	27	85	3	72	31	18	20	29	1.96
12891265--12891301	19	1.9	19	94	0	65	51	2	18	27	1.60
12896023--12896101	4	20.5	4	82	12	62	82	0	16	1	0.74
12896044--12896095	1	52.0	1	76	0	50	88	0	11	0	0.52
12896028--12896099	10	6.7	10	81	12	81	84	0	13	1	0.68
12896036--12896099	5	13.4	5	82	11	73	85	0	14	0	0.59
12896024--12896099	28	2.6	27	85	10	98	84	0	14	1	0.69
12896023--12896101	37	2.2	36	84	8	106	82	0	16	1	0.74
12902298--12902340	20	2.2	20	82	0	50	46	13	20	18	1.83
12902844--12902949	32	3.2	32	79	12	133	24	14	28	33	1.94
12902819--12902932	35	3.4	34	75	14	110	28	14	26	30	1.95
12902844--12902964	32	3.7	31	74	18	95	26	15	26	31	1.96
12902801--12902976	67	2.6	67	88	3	257	25	13	26	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12905436--12905528	44	2.1	44	90	4	143	29	38	8	23	1.84
12905482--12905558	35	2.2	35	83	4	93	29	38	5	25	1.78
12907553--12907667	37	3.1	37	86	7	153	30	8	35	25	1.86
12922369--12922486	42	2.8	43	84	5	150	22	20	36	20	1.95
12922379--12922499	42	2.8	43	83	5	147	23	18	38	19	1.93
12927373--12927399	14	1.9	14	100	0	54	44	14	22	18	1.86
12928426--12928536	43	2.6	43	88	2	161	25	20	35	18	1.96
12930192--12930366	73	2.4	70	83	6	217	22	16	19	41	1.90
12930208--12930366	72	2.2	73	85	3	223	22	17	18	41	1.90
12930208--12930388	72	2.5	73	80	2	213	22	17	18	42	1.89
12932774--12933022	35	7.1	35	84	3	279	36	7	12	43	1.71
12932774--12933022	71	3.6	70	82	3	297	36	7	12	43	1.71
12932767--12933043	142	2.0	139	86	3	385	36	7	13	42	1.72
12932815--12933043	107	2.2	105	82	4	253	36	7	14	41	1.74
12941100--12941280	73	2.5	73	83	3	213	22	16	18	41	1.89
12943163--12943203	21	1.9	21	85	5	55	51	7	21	19	1.71
12943161--12943208	21	2.3	20	75	10	51	56	6	20	16	1.62
12946675--12946778	38	2.7	40	90	3	167	21	14	39	25	1.91
12948697--12948861	54	3.1	54	86	0	231	25	39	13	21	1.90
12950313--12950354	19	2.2	19	86	0	57	38	9	33	19	1.84
12952568--12952646	34	2.3	34	97	0	149	48	1	0	50	1.08
12952561--12952628	20	3.7	19	70	22	65	52	1	0	45	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12953293--12953330	17	2.0	20	85	14	55	68	0	23	7	1.16
12953650--12953724	34	2.2	34	80	4	89	30	9	25	34	1.87
12953862--12953909	22	2.2	22	88	0	69	37	10	41	10	1.74
12953965--12954003	16	2.5	16	87	4	53	79	0	15	5	0.90
12957953--12958060	37	2.9	37	94	4	191	28	11	37	23	1.89
12972002--12972116	37	3.1	37	88	0	176	29	8	37	24	1.85
12973509--12973592	44	1.9	44	87	0	123	35	7	28	28	1.84
12975367--12975487	43	2.8	43	80	12	133	26	16	34	22	1.95
12975464--12975514	26	2.0	25	81	14	59	21	7	45	25	1.79
12975480--12975538	23	2.6	23	91	0	91	18	5	44	32	1.72
12982512--12982635	43	2.9	43	81	0	149	25	18	34	20	1.96
12982627--12982685	23	2.6	23	91	0	91	22	5	40	32	1.75
12987733--12987838	38	2.8	36	80	12	124	22	39	17	19	1.92
13000714--13000849	43	3.2	42	87	6	175	24	16	35	23	1.95
13005544--13005585	19	2.2	19	91	0	66	42	9	30	16	1.80
13019163--13019210	20	2.4	20	96	0	87	35	18	27	18	1.95
13023112--13023154	20	2.2	20	83	8	52	23	4	6	65	1.37
13038401--13038503	38	2.6	39	84	6	129	20	15	40	23	1.90
13038401--13038506	40	2.7	38	85	5	133	20	15	40	23	1.90
13038839--13038879	21	2.0	21	85	0	55	26	26	19	26	1.99
13041234--13041291	18	3.2	17	78	9	53	17	5	0	77	0.94
13041372--13041509	72	1.9	72	80	2	161	28	20	28	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13043623--13043675	22	2.5	22	82	14	58	18	1	11	67	1.30
13046127--13046153	14	1.9	14	100	0	54	29	0	11	59	1.32
13046335--13046443	37	2.9	37	93	0	182	29	9	35	25	1.87
13051076--13051100	2	12.5	2	100	0	50	52	0	0	48	1.00
13051362--13051391	12	2.5	12	100	0	60	33	6	16	43	1.74
13057087--13057182	50	1.9	49	83	10	124	35	17	15	31	1.92
13057743--13057897	72	2.2	73	78	5	172	16	19	19	45	1.86
13057850--13057965	57	2.0	57	100	0	232	12	25	20	42	1.86
13060489--13060553	28	2.3	28	86	5	87	40	10	10	38	1.75
13060719--13060751	17	1.9	17	88	11	50	39	3	15	42	1.62
13062945--13063009	28	2.3	28	84	5	78	43	9	7	40	1.65
13063174--13063206	17	1.9	17	88	11	50	39	3	15	42	1.62
13064984--13065044	2	30.5	2	93	0	104	47	0	1	50	1.10
13065871--13066293	60	7.0	61	87	4	572	24	31	17	26	1.97
13065871--13066294	182	2.3	181	87	4	588	24	31	17	27	1.97
13066900--13066937	2	19.0	2	88	0	58	44	0	0	55	0.99
13066986--13067064	3	26.3	3	80	12	58	0	25	1	73	0.91
13066978--13067064	7	13.3	7	77	17	80	0	26	1	72	0.92
13067090--13067116	14	1.9	14	100	0	54	3	37	0	59	1.15
13067151--13067226	18	4.1	18	74	5	80	1	30	0	68	0.98
13067145--13067225	11	7.5	11	68	16	53	1	32	0	66	0.99
13071075--13071193	37	3.2	37	83	7	170	29	9	36	24	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13075332--13075370	19	2.1	19	85	4	53	61	0	17	20	1.34
13076416--13076511	43	2.3	43	90	1	149	27	18	30	23	1.98
13081811--13081852	15	2.6	17	77	11	52	45	9	0	45	1.36
13086794--13086843	21	2.4	21	86	3	66	26	20	24	30	1.98
13104411--13104585	29	5.9	28	78	9	154	38	9	10	41	1.72
13104411--13104583	59	2.9	58	81	5	204	38	9	10	41	1.71
13104727--13104759	17	1.9	17	88	11	50	39	3	15	42	1.62
13113473--13113577	42	2.5	41	86	7	138	30	8	21	39	1.84
13113720--13113801	41	2.0	41	82	0	101	28	8	20	42	1.81
13113585--13113785	107	1.9	107	86	1	287	37	8	17	35	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59