genome.fa.s10.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  37  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13449757--13449843	28	3.1	28	63	26	67	19	14	39	26	1.91
13453714--13454302	252	2.3	252	81	4	686	36	12	6	44	1.67
13458553--13458631	40	2.0	40	87	5	115	36	8	27	26	1.86
13465479--13465506	2	14.0	2	100	0	56	50	0	0	50	1.00
13467349--13467574	62	3.6	61	83	3	254	32	20	23	23	1.98
13467349--13467574	124	1.8	125	82	0	292	32	20	23	23	1.98
13467667--13467751	2	42.5	2	95	0	152	48	1	0	49	1.09
13467846--13467932	36	2.4	36	83	5	97	28	34	14	21	1.94
13469233--13469284	15	3.5	15	75	17	54	26	1	1	69	1.10
13469232--13469274	17	2.6	17	79	17	54	30	0	2	67	1.03
13470370--13470442	35	2.1	36	82	7	87	47	24	19	8	1.76
13473390--13474156	381	2.0	382	99	0	1509	32	10	12	44	1.76
13486563--13486628	32	2.1	32	85	0	87	48	33	7	10	1.66
13487154--13487188	2	17.5	2	100	0	70	51	48	0	0	1.00
13501205--13501399	91	2.1	91	92	0	327	35	21	17	25	1.95
13508561--13508769	55	3.8	55	93	0	337	22	13	35	28	1.92
13513010--13513047	17	2.2	18	90	4	60	26	23	7	42	1.81
13513848--13513985	43	3.2	43	87	4	199	28	18	30	21	1.97
13517832--13518024	74	2.6	73	86	3	269	26	22	23	27	2.00
13518308--13518390	35	2.3	36	83	8	98	30	33	13	22	1.92
13527166--13527289	61	2.0	61	98	0	239	35	24	20	19	1.96
13537832--13538166	42	8.0	41	86	7	440	22	22	31	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13537832--13538166	84	4.0	84	88	2	485	22	22	31	23	1.98
13537832--13538166	126	2.7	125	86	4	485	22	22	31	23	1.98
13538210--13538234	2	12.5	2	100	0	50	52	0	0	48	1.00
13540086--13540250	60	2.8	60	80	10	201	32	21	20	24	1.98
13540621--13540730	43	2.6	43	86	5	143	21	37	17	23	1.94
13541525--13541568	19	2.2	21	88	8	65	38	15	22	22	1.92
13544240--13544574	42	8.0	41	86	7	440	22	22	31	23	1.98
13544240--13544574	84	4.0	84	88	2	485	22	22	31	23	1.98
13544240--13544574	126	2.7	125	86	4	485	22	22	31	23	1.98
13544618--13544649	2	16.0	2	93	0	55	50	3	0	46	1.17
13548850--13548905	25	2.2	26	81	9	71	16	32	14	37	1.88
13548865--13548912	25	1.9	25	91	0	78	14	29	14	41	1.85
13548909--13548943	13	2.8	12	87	12	52	0	11	0	88	0.51
13548907--13548942	18	2.1	17	94	5	63	0	13	0	86	0.58
13548914--13548951	18	2.1	18	85	9	51	0	18	0	81	0.69
13548947--13549014	30	2.3	30	87	9	97	1	50	7	41	1.39
13548981--13549146	56	3.1	49	79	15	172	1	45	4	48	1.31
13549004--13549094	29	3.2	29	68	18	75	2	42	2	52	1.25
13549006--13549151	56	2.6	56	82	11	176	1	44	4	49	1.32
13549235--13549294	15	4.2	15	79	10	72	1	23	0	75	0.90
13568617--13568657	20	2.0	20	100	0	82	41	0	24	34	1.55
13587946--13588082	39	3.4	40	82	3	177	59	17	1	21	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13588535--13588566	15	2.1	16	94	5	57	40	0	6	53	1.26
13593480--13593555	21	3.6	21	87	1	107	23	15	19	40	1.90
13603773--13603836	25	2.6	25	78	14	69	37	3	3	56	1.31
13604552--13604594	22	2.0	22	86	9	61	53	4	6	34	1.49
13605339--13605469	63	2.1	64	79	1	138	56	5	9	29	1.53
13607771--13607844	21	3.6	21	75	10	64	36	14	14	33	1.88
13614254--13614374	39	3.1	39	89	1	152	28	15	32	23	1.95
13614350--13614392	19	2.3	19	96	4	79	34	13	20	30	1.92
13614310--13614431	58	2.1	58	92	1	201	31	13	27	27	1.94
13614367--13614489	39	3.2	39	88	3	180	25	12	34	27	1.91
13617851--13617883	12	2.8	12	86	13	50	51	0	6	42	1.26
13620945--13621081	39	3.6	39	86	4	165	21	13	39	26	1.89
13628211--13628270	30	2.1	29	81	6	68	31	8	21	38	1.83
13636242--13636285	22	2.0	22	86	8	63	40	6	20	31	1.79
13636865--13636891	2	13.5	2	100	0	54	51	0	0	48	1.00
13637060--13637244	41	4.6	40	77	11	150	26	16	34	22	1.95
13638599--13638655	8	7.6	8	75	15	50	66	0	29	3	1.08
13642715--13642753	17	2.2	18	86	13	55	41	0	10	48	1.37
13644061--13644103	19	2.3	19	88	4	70	51	0	4	44	1.22
13644462--13644500	16	2.5	15	91	8	60	69	0	0	30	0.89
13644667--13644718	3	17.7	3	84	15	65	71	0	28	0	0.87
13644663--13644722	10	5.9	10	78	18	70	71	0	28	0	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13644662--13644747	15	5.7	15	78	10	59	76	0	23	0	0.78
13644666--13644747	13	6.2	14	80	11	86	76	0	23	0	0.78
13644848--13644971	56	2.2	56	88	7	178	50	4	43	1	1.30
13644893--13645001	49	2.2	48	81	14	132	48	4	44	2	1.37
13645062--13645109	25	1.9	25	86	0	69	43	14	27	14	1.84
13648646--13648691	19	2.4	20	82	10	60	54	0	2	43	1.12
13649161--13649219	28	2.1	28	84	6	75	32	20	23	23	1.98
13657736--13657760	13	1.9	13	100	0	50	48	8	0	44	1.32
13659157--13659194	19	2.0	19	94	0	67	42	28	0	28	1.56
13663471--13663504	8	4.2	8	88	0	50	61	0	0	38	0.96
13663463--13663522	22	2.7	23	79	10	70	68	0	5	26	1.10
13680657--13680689	17	1.9	17	88	11	50	42	15	3	39	1.62
13680831--13680998	28	5.8	27	77	14	149	38	9	9	42	1.70
13680841--13681004	59	2.8	56	83	10	195	40	9	9	41	1.69
13680831--13681004	29	6.0	28	78	9	161	37	9	9	43	1.70
13695717--13695925	34	6.1	34	84	2	258	35	24	18	22	1.95
13698390--13698427	19	2.0	19	89	0	58	42	26	2	28	1.69
13698757--13698889	67	2.0	67	96	0	248	30	28	12	28	1.92
13704555--13704815	68	3.9	68	76	6	242	34	18	9	36	1.85
13705968--13706014	15	3.0	15	79	17	51	19	14	6	59	1.56
13705968--13706033	33	2.0	33	94	2	116	19	15	4	60	1.51
13706077--13706119	16	2.6	16	85	3	50	69	13	0	16	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13711303--13711365	23	2.7	23	80	14	58	53	1	22	22	1.54
13717814--13718056	68	3.6	68	82	6	278	34	18	10	36	1.85
13732361--13732394	12	2.9	12	95	4	61	61	5	8	23	1.47
13732721--13732781	31	2.0	31	90	0	95	36	4	19	39	1.74
13734356--13734418	32	1.9	33	83	3	83	28	25	14	31	1.95
13734728--13734807	36	2.2	36	86	2	106	31	27	12	28	1.93
13736537--13736580	20	2.2	20	91	0	70	27	11	27	34	1.91
13736772--13736838	21	3.2	21	89	0	98	35	14	19	29	1.92
13737920--13737985	28	2.3	29	76	5	71	31	15	19	33	1.93
13740582--13740613	5	6.4	5	100	0	64	43	0	18	37	1.51
13740825--13740850	9	2.9	9	100	0	52	19	57	0	23	1.40
13759290--13759358	29	2.3	30	90	2	113	46	4	13	36	1.62
13759290--13759375	29	2.9	30	83	10	90	48	5	12	32	1.65
13759567--13759596	15	2.0	15	93	0	51	50	0	0	50	1.00
13759695--13759756	21	3.0	21	71	2	63	51	1	0	46	1.10
13767331--13767595	141	1.9	140	81	2	325	32	20	22	24	1.97
13769588--13769619	16	2.0	16	100	0	64	31	18	0	50	1.48
13771189--13771637	78	5.7	78	89	1	664	20	24	18	36	1.94
13771193--13771637	158	2.8	157	90	0	694	20	23	19	37	1.94
13771849--13772051	78	2.6	78	91	0	325	19	25	19	36	1.95
13771438--13772264	414	2.0	414	95	0	1476	26	22	17	33	1.96
13775406--13775932	111	4.7	111	88	2	734	45	25	11	17	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13775406--13775932	222	2.3	228	90	3	809	45	25	11	17	1.82
13776568--13776627	30	2.0	30	90	0	93	31	30	15	23	1.95
13778542--13778579	19	2.0	19	94	0	67	28	0	28	42	1.56
13781933--13781970	20	1.9	20	100	0	76	28	5	21	44	1.73
13782024--13782081	28	2.1	27	81	12	73	31	22	22	24	1.99
13783205--13783239	16	2.2	16	89	0	52	40	2	8	48	1.49
13787395--13787481	45	1.9	45	90	0	138	31	16	31	21	1.95
13787409--13787503	24	4.1	24	74	8	88	30	18	29	21	1.97
13789137--13789187	26	2.0	26	96	0	93	21	13	7	56	1.62
13789206--13789402	100	2.0	100	95	0	358	27	17	14	41	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59