genome.fa.s10.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  39  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14106825--14107030	26	8.1	26	87	4	267	41	24	8	24	1.83
14107027--14107107	21	3.8	20	77	8	72	41	20	11	25	1.86
14107311--14107338	9	3.1	9	100	0	56	42	21	10	25	1.85
14107205--14107348	59	2.4	59	76	13	143	38	17	9	34	1.81
14109808--14109848	21	2.0	22	85	9	59	78	4	14	2	1.03
14112109--14112153	23	1.9	24	86	4	65	22	4	0	73	1.01
14113735--14113764	9	3.3	9	95	0	51	43	20	10	26	1.83
14113821--14113873	23	2.2	24	83	3	72	67	3	0	28	1.07
14113815--14113873	12	5.0	12	78	10	50	66	3	0	30	1.08
14114012--14114061	18	2.8	18	90	6	75	42	20	12	26	1.86
14114750--14114788	15	2.6	15	87	0	60	2	38	5	53	1.37
14116419--14116654	103	2.3	102	83	3	305	25	13	22	38	1.90
14116419--14116682	102	2.6	102	80	4	291	25	13	22	39	1.90
14117212--14117270	30	2.0	30	100	0	118	25	13	30	30	1.94
14117902--14118312	111	3.6	108	81	8	412	18	11	26	43	1.84
14118116--14118374	118	2.2	118	84	0	331	19	13	26	40	1.88
14118116--14118418	118	2.6	117	81	2	293	19	13	26	40	1.89
14123134--14123215	39	2.1	39	90	0	128	19	36	17	26	1.94
14123190--14123249	24	2.5	24	97	0	111	20	31	21	26	1.98
14126130--14126269	52	2.6	53	85	4	183	39	18	15	27	1.90
14126381--14126482	26	4.0	26	71	10	93	39	9	17	33	1.83
14127388--14127428	20	2.0	20	86	9	57	43	2	9	43	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14129020--14129054	10	3.5	10	88	0	52	42	25	5	25	1.77
14135097--14135139	24	1.9	23	86	13	63	48	6	39	4	1.51
14135137--14135237	18	5.6	18	92	0	175	38	12	39	8	1.75
14135137--14135237	36	2.8	36	96	0	193	38	12	39	8	1.75
14137654--14137993	171	2.0	167	84	3	439	42	22	8	26	1.83
14152588--14152690	38	2.6	40	82	8	133	20	15	40	23	1.90
14157668--14157707	20	2.0	20	85	9	55	50	17	12	20	1.78
14158157--14158194	19	2.0	19	94	0	67	42	28	0	28	1.56
14159699--14159724	2	13.0	2	100	0	52	50	0	50	0	1.00
14159722--14159755	4	8.5	4	100	0	68	26	0	50	23	1.50
14161600--14161719	49	2.4	49	97	0	222	23	17	36	22	1.94
14162804--14162927	43	2.8	45	84	8	164	22	16	36	25	1.94
14165616--14165737	61	2.0	61	98	0	235	41	9	30	18	1.82
14180887--14180924	19	2.0	19	94	0	67	42	28	0	28	1.56
14182529--14182569	17	2.4	17	88	8	57	43	0	2	53	1.13
14186160--14187026	436	2.0	433	85	3	1161	36	15	14	33	1.88
14187665--14187724	30	2.0	29	90	3	93	28	15	11	45	1.81
14187806--14187858	26	2.1	26	86	10	74	28	9	30	32	1.88
14187806--14187858	25	2.1	25	86	10	72	28	9	30	32	1.88
14196456--14196482	2	13.5	2	100	0	54	48	0	0	51	1.00
14199316--14199409	33	2.7	34	85	8	111	21	12	37	28	1.90
14201204--14201228	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14201943--14202005	21	2.9	21	76	19	67	53	3	0	42	1.16
14218450--14218488	2	19.5	2	83	0	51	51	5	41	2	1.38
14222168--14222308	70	2.0	69	94	2	255	34	7	21	36	1.81
14223368--14223475	34	3.2	32	69	10	83	31	14	24	29	1.95
14223391--14223492	31	3.2	31	68	10	87	29	13	23	33	1.93
14223383--14223537	66	2.4	65	88	2	220	29	13	25	30	1.94
14223432--14223537	34	3.2	34	73	8	110	33	12	25	29	1.92
14224592--14224639	25	1.9	25	83	8	62	22	8	6	62	1.46
14243411--14243477	26	2.6	26	85	4	82	38	8	19	32	1.83
14244754--14244872	42	2.8	42	93	3	204	22	21	32	23	1.98
14250016--14250044	15	1.9	15	100	0	58	34	27	3	34	1.74
14251927--14252011	33	2.6	32	82	14	102	68	1	3	27	1.13
14252226--14252254	15	1.9	15	100	0	58	41	20	0	37	1.53
14253264--14253288	4	6.2	4	100	0	50	0	0	24	76	0.80
14260387--14260484	49	2.0	50	89	2	153	35	9	18	36	1.83
14262119--14262250	36	3.7	36	77	8	110	26	37	12	23	1.90
14280027--14280066	8	5.0	8	87	0	53	40	2	0	57	1.12
14280642--14280710	2	34.0	2	88	2	102	49	4	0	44	1.22
14281206--14281273	8	8.5	8	78	0	64	39	1	10	48	1.46
14281208--14281273	24	2.8	24	86	4	80	39	1	10	48	1.47
14281397--14281493	36	2.7	36	93	0	167	24	45	11	18	1.82
14282426--14282478	28	1.9	27	81	11	63	67	5	20	5	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14287841--14287997	79	2.0	79	93	0	269	35	26	17	21	1.95
14287920--14288059	72	1.9	72	84	2	183	32	24	16	27	1.96
14288775--14288807	2	16.5	2	100	0	66	51	0	0	48	1.00
14289759--14289809	2	25.5	2	95	0	93	47	0	0	52	1.00
14289583--14289982	220	1.8	221	90	0	649	35	10	15	39	1.81
14296832--14296869	20	1.9	20	100	0	76	28	5	23	42	1.76
14296920--14296973	28	2.0	27	88	3	81	29	20	22	27	1.98
14308491--14308533	21	2.0	21	81	0	50	30	9	34	25	1.87
14308924--14308986	22	2.9	22	97	0	117	42	23	3	30	1.70
14312398--14312435	19	2.0	19	94	0	67	28	0	28	42	1.56
14315633--14315703	36	2.0	36	88	0	106	35	25	19	19	1.96
14319773--14319813	21	2.0	21	85	9	57	41	12	4	41	1.64
14319804--14319853	25	2.0	24	85	14	66	36	14	8	42	1.74
14319945--14319983	17	2.4	16	83	8	51	35	0	2	61	1.10
14327765--14327855	44	2.1	44	100	0	182	28	19	26	25	1.99
14330688--14330725	17	2.2	18	85	4	51	57	5	2	34	1.35
14330671--14330730	25	2.4	25	81	10	70	60	3	3	33	1.30
14334292--14334340	18	2.7	18	83	0	71	28	10	14	46	1.77
14334329--14334367	18	2.1	19	85	4	53	33	2	17	46	1.62
14337568--14337597	15	2.1	14	93	6	51	30	13	20	36	1.90
14346952--14346981	2	15.0	2	100	0	60	50	0	0	50	1.00
14356782--14356850	30	2.3	30	87	5	95	49	5	10	34	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14357384--14357477	2	46.5	2	82	10	102	42	2	5	48	1.37
14359414--14359445	16	2.0	16	100	0	64	43	0	25	31	1.55
14359412--14359448	16	2.5	14	84	16	56	40	0	29	29	1.57
14368030--14368068	14	2.8	14	84	0	51	20	7	2	69	1.26
14372352--14372872	59	8.8	59	89	2	740	34	20	13	31	1.91
14383428--14383452	13	1.9	13	100	0	50	84	0	0	16	0.63
14386834--14386883	24	2.1	24	88	0	73	6	24	10	60	1.51
14387498--14387567	29	2.4	28	83	9	95	61	0	0	38	0.96
14389564--14389593	4	7.5	4	100	0	60	50	26	0	23	1.50
14396793--14396848	29	2.0	28	85	3	76	33	25	14	26	1.94
14398457--14398494	2	19.0	2	100	0	76	50	50	0	0	1.00
14400245--14400310	30	2.2	29	83	2	87	42	1	28	27	1.64
14400329--14400388	31	1.9	31	82	0	75	48	5	23	23	1.70
14402603--14402663	25	2.5	24	78	7	68	27	13	26	32	1.93
14407299--14407345	15	3.1	15	84	3	58	57	12	0	29	1.36
14407305--14407350	15	3.1	15	87	0	65	56	15	0	28	1.39
14415068--14415223	69	2.3	68	81	1	168	29	16	21	33	1.95
14416507--14416549	19	2.2	20	88	12	63	30	23	4	41	1.74
14417414--14417582	80	2.1	80	85	0	230	35	8	22	33	1.84
14421420--14421457	20	1.9	20	94	0	67	31	15	18	34	1.92
14422322--14422386	21	3.1	21	77	0	67	26	9	18	46	1.79
14422482--14422579	43	2.3	43	87	1	135	30	4	13	52	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14422496--14422579	21	3.9	22	75	4	82	30	3	13	52	1.57
14422608--14422659	23	2.3	22	86	3	68	34	5	11	48	1.63
14422653--14422702	21	2.4	21	86	6	66	30	8	10	52	1.64
14422664--14422709	21	2.1	22	84	4	58	28	10	6	54	1.60
14422843--14422900	20	2.9	20	76	0	62	37	17	10	34	1.84
14432504--14432545	16	2.6	16	82	14	50	64	11	0	23	1.27
14440954--14441027	35	2.1	35	85	5	96	29	36	10	22	1.89
14443599--14443694	35	2.7	35	88	0	120	29	26	13	31	1.94
14445058--14445166	32	3.3	32	73	12	94	33	24	14	27	1.95
14445069--14445209	67	2.1	67	88	5	205	34	26	14	24	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59