genome.fa.s10.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  5  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1325861--1325901	2	20.5	2	100	0	82	0	48	0	51	1.00
1332167--1332205	19	2.1	19	95	4	71	30	35	0	33	1.58
1335706--1335739	17	1.9	18	88	5	52	44	23	14	17	1.86
1336566--1336635	2	34.0	2	86	2	77	47	1	0	44	1.12
1354037--1354074	19	2.0	19	85	10	51	10	13	0	76	1.02
1365832--1365866	2	17.5	2	100	0	70	48	0	0	51	1.00
1376457--1376701	124	2.0	124	79	5	271	42	9	6	40	1.64
1400292--1400344	2	26.5	2	100	0	106	50	0	0	49	1.00
1402409--1402463	27	2.0	27	96	0	101	43	7	21	27	1.79
1402854--1402880	2	13.5	2	100	0	54	0	51	0	48	1.00
1403894--1403930	2	18.5	2	100	0	74	0	48	0	51	1.00
1414595--1414637	21	2.0	21	90	0	68	37	0	20	41	1.53
1414916--1414942	3	9.0	3	100	0	54	33	0	0	66	0.92
1416846--1416897	23	2.3	23	87	9	79	73	1	25	0	0.94
1416838--1416900	23	2.5	24	77	15	65	74	1	23	0	0.90
1420433--1420602	60	2.8	60	78	5	182	27	14	30	28	1.95
1420560--1420643	41	2.0	41	86	0	114	21	15	34	28	1.94
1420500--1420703	101	2.0	101	88	0	300	23	16	31	28	1.96
1420608--1420929	60	5.3	60	86	3	423	27	17	28	26	1.98
1420449--1420750	161	1.9	161	84	4	412	24	15	30	28	1.96
1420615--1420905	122	2.4	120	87	1	411	27	17	29	26	1.97
1422663--1422720	22	2.6	22	80	0	71	51	24	3	20	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1432330--1432363	2	17.0	2	100	0	68	50	50	0	0	1.00
1435118--1435304	94	2.0	94	92	0	311	19	11	24	44	1.83
1441785--1441872	22	4.0	22	72	8	63	47	25	4	22	1.70
1442805--1442842	19	2.0	20	85	15	53	78	2	15	2	0.97
1449947--1449972	2	13.0	2	100	0	52	50	0	0	50	1.00
1451640--1451673	15	2.3	15	89	0	50	38	8	32	20	1.84
1451652--1451705	27	2.0	27	96	0	99	35	12	29	22	1.91
1453275--1453459	97	1.9	96	93	3	318	19	9	23	47	1.79
1464345--1464375	16	1.9	16	100	0	62	35	6	25	32	1.82
1470514--1470550	18	2.0	19	89	5	58	16	0	13	70	1.17
1473939--1473971	3	11.0	3	100	0	66	33	66	0	0	0.92
1481037--1481161	21	5.5	21	68	17	88	12	13	29	44	1.81
1481056--1481140	26	3.5	26	71	15	99	14	12	27	45	1.81
1481005--1481162	47	3.4	47	95	0	271	13	13	29	43	1.82
1484646--1485298	154	4.4	151	78	4	567	42	14	10	32	1.80
1492838--1492929	31	3.0	31	80	6	123	26	10	21	41	1.86
1500796--1500825	2	15.0	2	100	0	60	0	50	0	50	1.00
1503733--1503767	2	17.5	2	100	0	70	51	0	0	48	1.00
1506349--1507417	239	4.4	239	92	4	1751	33	10	14	41	1.81
1506349--1507419	118	8.9	122	93	3	1791	33	10	14	41	1.80
1506348--1507419	362	3.0	362	96	2	1946	33	10	14	41	1.80
1506349--1507419	117	8.9	121	93	3	1817	33	10	14	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1520939--1520978	2	20.0	2	100	0	80	50	0	0	50	1.00
1535495--1535536	3	14.0	3	100	0	84	66	0	0	33	0.92
1535888--1536139	45	5.0	51	73	20	208	24	26	27	21	1.99
1535888--1536139	99	2.5	99	86	3	348	24	26	27	21	1.99
1537378--1537584	51	4.0	51	86	6	290	24	28	14	32	1.94
1543467--1543512	23	2.0	23	91	0	74	36	13	10	39	1.79
1546972--1547017	23	2.0	23	95	0	83	39	13	10	36	1.79
1555669--1555727	23	2.5	23	86	2	73	27	11	16	44	1.83
1556273--1556320	24	2.0	23	96	4	87	33	8	18	39	1.81
1560539--1560570	15	2.1	15	100	0	64	21	12	31	34	1.91
1560703--1560811	23	4.7	23	93	5	177	25	13	17	43	1.86
1565838--1565870	6	5.5	6	92	0	57	18	45	18	18	1.86
1565835--1565870	18	2.0	18	100	0	72	16	44	16	22	1.86
1570452--1570532	42	1.9	42	92	0	135	37	18	7	37	1.79
1589959--1590017	31	1.9	31	100	0	118	20	10	23	45	1.81
1594177--1594250	24	3.0	25	82	11	73	41	8	14	35	1.76
1594175--1594250	26	3.0	25	81	12	77	42	7	14	35	1.75
1594163--1594457	80	3.6	80	83	5	317	44	10	10	34	1.73
1594276--1594331	24	2.3	23	82	14	60	50	8	7	33	1.61
1594259--1594332	26	2.9	25	71	20	64	44	10	9	35	1.72
1594301--1594361	30	2.1	29	84	6	79	47	9	11	31	1.72
1594445--1594528	30	2.8	30	74	11	84	41	11	10	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1601066--1601093	12	2.3	12	100	0	56	92	0	7	0	0.37
1612181--1612256	37	2.1	37	94	0	134	61	14	3	19	1.48
1622379--1622595	92	2.4	92	82	3	258	35	8	17	38	1.80
1622661--1622691	12	2.5	13	94	5	55	22	0	16	61	1.34
1624832--1624882	23	2.2	23	96	0	93	39	15	33	11	1.84
1635252--1635281	13	2.4	12	94	5	51	53	10	6	30	1.60
1649409--1649681	137	2.0	136	98	1	521	44	10	14	29	1.80
1649546--1650004	180	2.6	174	82	7	519	38	12	16	32	1.86
1650190--1650284	36	2.6	36	98	0	181	52	9	12	25	1.69
1656801--1656846	2	23.0	2	100	0	92	50	0	0	50	1.00
1671235--1671275	21	2.0	21	85	0	55	46	0	0	53	1.00
1673930--1673969	17	2.6	16	88	11	57	62	0	5	32	1.17
1673948--1673981	18	1.9	17	88	5	50	70	0	8	20	1.13
1674230--1674328	50	2.1	50	83	7	125	58	3	6	32	1.38
1674242--1674350	50	2.2	49	85	6	141	55	4	7	32	1.48
1674358--1674388	2	15.5	2	100	0	62	51	0	0	48	1.00
1674670--1674703	2	17.0	2	100	0	68	50	0	0	50	1.00
1675875--1675948	29	2.6	29	82	8	80	58	2	1	37	1.21
1680776--1680848	25	3.0	23	76	13	74	31	4	4	60	1.34
1682328--1682374	2	24.5	2	79	16	55	46	0	51	0	1.01
1682328--1682377	24	2.1	23	86	13	75	48	0	50	0	1.01
1684243--1684513	139	1.9	138	85	6	373	28	19	16	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1700829--1700893	22	3.3	21	68	28	61	23	12	9	55	1.65
1700828--1700901	37	2.0	37	91	0	121	22	10	12	54	1.68
1701062--1701095	18	1.9	17	88	5	50	55	0	5	38	1.24
1700952--1701158	89	2.3	89	88	2	290	52	5	4	37	1.45
1701183--1701295	56	2.1	54	88	6	165	26	7	7	57	1.55
1703040--1703084	22	2.0	22	100	0	90	22	13	17	46	1.83
1719513--1719584	37	1.9	37	91	0	117	29	2	22	45	1.66
1720967--1721058	47	2.0	47	86	4	132	44	8	6	40	1.61
1733140--1733175	19	2.0	18	89	10	56	50	8	0	41	1.33
1740591--1740616	2	13.0	2	100	0	52	50	0	50	0	1.00
1740637--1740664	2	14.0	2	100	0	56	50	0	50	0	1.00
1742073--1742102	10	2.9	10	95	5	51	86	3	0	10	0.67
1745185--1745237	26	2.0	26	96	0	97	18	11	13	56	1.66
1770245--1770380	19	7.5	18	70	18	86	29	10	5	54	1.58
1770157--1770380	56	4.0	57	81	13	261	28	10	8	53	1.63
1779835--1779937	51	2.0	52	94	1	181	39	6	21	32	1.79
1789279--1789327	15	2.9	18	70	17	50	53	2	2	42	1.24
1795983--1796042	24	2.5	23	78	10	59	51	0	0	48	1.00
1798230--1798255	13	2.0	13	100	0	52	0	7	92	0	0.39
1804757--1804813	24	2.4	25	79	8	73	35	1	0	63	1.05
1804757--1804812	23	2.4	24	85	8	71	35	1	0	62	1.06
1810483--1810515	15	2.1	16	88	5	50	27	3	0	69	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1812286--1812350	32	2.0	32	96	0	121	18	10	12	58	1.62
1821558--1821592	18	1.9	18	88	11	54	20	5	0	74	1.02
1828362--1828393	15	2.1	15	100	0	64	31	12	18	37	1.88
1830463--1830564	39	2.6	39	87	6	152	26	36	14	22	1.93
1831702--1831748	20	2.3	20	86	13	62	0	29	0	70	0.88
1832907--1832945	19	2.1	19	90	0	60	38	2	2	56	1.27
1839067--1839131	21	3.0	21	77	2	67	18	7	26	47	1.75
1839178--1839238	23	2.7	22	87	5	95	42	24	8	24	1.82
1839178--1839254	22	3.4	23	87	3	104	42	24	7	24	1.81
1839249--1839334	21	4.0	21	75	8	84	39	23	13	23	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59