genome.fa.s10.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  27  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9974081--9974158	40	2.0	38	82	9	95	30	11	15	42	1.82
9975755--9976044	61	4.8	61	89	0	427	27	33	16	22	1.95
9989165--9989205	15	2.9	14	89	7	57	4	26	0	68	1.10
9990099--9990190	39	2.4	39	85	3	114	25	14	34	26	1.93
9990124--9990236	39	3.0	38	85	3	140	25	12	34	27	1.92
9990134--9990236	36	2.7	38	85	4	129	24	13	35	26	1.92
9994267--9994472	72	2.8	72	88	4	245	19	11	38	31	1.87
9994267--9994472	36	5.7	35	77	8	198	19	11	38	31	1.87
9994325--9994472	72	2.1	72	97	0	278	20	11	35	33	1.88
9994562--9994606	2	23.0	2	81	4	56	46	2	2	48	1.26
9995494--9995535	14	3.0	14	85	0	57	66	0	33	0	0.92
9995496--9995536	21	2.0	21	90	0	64	68	0	31	0	0.90
9996417--9996484	2	34.5	2	91	2	111	51	0	1	47	1.09
9999525--9999758	92	2.5	92	83	2	308	22	20	17	40	1.91
10001541--10001629	25	3.4	27	78	10	96	25	26	20	26	1.99
10005319--10005348	2	14.5	2	93	6	51	50	0	3	46	1.18
10007467--10007518	19	2.7	19	100	0	104	44	0	0	55	0.99
10009508--10009596	45	2.0	45	100	0	178	39	11	33	15	1.83
10010841--10010889	2	24.5	2	100	0	98	51	0	0	48	1.00
10014128--10014345	72	3.0	72	85	3	276	27	18	13	41	1.87
10014196--10014371	72	2.4	71	85	5	194	27	21	11	38	1.89
10035929--10035999	35	2.0	36	86	2	99	49	19	9	21	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10036239--10036325	29	3.0	29	83	8	99	20	29	5	43	1.75
10037011--10037199	99	1.9	102	82	3	240	23	17	11	47	1.79
10038545--10038585	19	2.2	20	83	16	52	73	4	14	7	1.22
10040446--10040486	21	1.9	22	95	5	75	53	7	21	17	1.67
10040445--10040492	21	2.2	21	85	3	69	60	6	18	14	1.55
10045324--10045379	29	1.9	29	88	0	85	16	23	12	48	1.80
10048434--10048471	20	1.9	20	94	0	67	42	21	7	28	1.81
10049522--10049568	25	1.9	24	83	12	60	57	4	4	34	1.38
10051666--10051731	29	2.3	28	84	2	78	30	6	18	45	1.73
10052885--10052909	13	1.9	13	100	0	50	52	0	0	48	1.00
10054408--10054458	2	26.0	2	82	4	59	47	1	1	49	1.24
10054635--10054660	2	13.0	2	100	0	52	50	0	0	50	1.00
10056485--10056543	24	2.4	25	80	2	75	25	30	16	27	1.97
10059770--10059815	20	2.3	20	96	0	83	28	4	21	45	1.71
10065161--10065677	260	2.0	259	96	0	953	25	15	27	31	1.95
10067584--10067629	20	2.3	20	96	0	83	28	4	21	45	1.71
10086762--10086808	10	4.8	10	78	5	51	2	12	4	80	0.94
10086761--10086808	19	2.5	19	80	16	62	2	12	6	79	1.01
10102367--10102407	15	2.7	15	88	3	55	41	7	0	51	1.30
10116100--10116369	35	7.7	35	81	3	267	43	13	5	37	1.69
10116121--10116369	107	2.4	105	82	6	301	44	13	6	36	1.68
10116107--10116376	142	1.9	138	87	3	396	44	12	5	37	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10120517--10120582	2	33.0	2	96	0	123	48	0	1	50	1.10
10133390--10133414	2	12.5	2	100	0	50	52	48	0	0	1.00
10138388--10138482	49	1.9	49	97	0	181	32	17	16	32	1.93
10144229--10144267	20	2.0	20	85	5	53	61	5	2	30	1.31
10145172--10145235	29	2.2	29	80	2	76	60	3	4	31	1.32
10145528--10145584	30	1.9	30	96	0	105	31	3	14	50	1.59
10145648--10145725	33	2.4	33	82	0	102	41	6	12	39	1.69
10146308--10146340	16	2.1	17	88	11	52	21	12	0	66	1.23
10155851--10155956	23	4.7	23	76	6	83	33	11	18	35	1.87
10159725--10160418	86	8.1	86	83	2	840	21	19	30	27	1.98
10159725--10160418	343	2.0	344	86	1	955	21	19	30	27	1.98
10161837--10162008	81	2.1	81	86	2	256	27	33	17	20	1.95
10164289--10164366	31	2.5	31	83	2	95	37	20	15	26	1.92
10164513--10164561	20	2.5	20	93	0	80	38	28	20	12	1.89
10164998--10165448	104	4.5	104	71	13	289	23	35	13	28	1.92
10165223--10165341	45	2.6	46	75	14	129	27	36	10	24	1.89
10165304--10165354	24	2.1	24	82	7	59	25	39	15	19	1.91
10165055--10165482	194	2.2	197	84	2	540	23	34	13	29	1.93
10165400--10165524	23	5.4	23	76	4	117	22	34	13	29	1.92
10167405--10167452	22	2.2	22	81	7	53	39	0	4	56	1.19
10167450--10167516	8	8.1	8	77	9	55	53	1	1	43	1.19
10167468--10167525	27	2.1	27	90	6	91	53	0	1	44	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10167475--10167525	11	4.3	11	73	26	50	52	0	1	45	1.12
10168186--10168241	30	1.9	30	85	7	80	7	7	14	71	1.29
10168360--10168384	5	5.0	5	100	0	50	80	0	0	20	0.72
10171511--10171553	16	2.7	16	82	10	52	62	11	0	25	1.29
10172868--10172902	18	2.1	17	89	10	54	71	11	2	14	1.25
10174828--10174890	9	7.0	9	79	16	60	15	0	3	80	0.83
10174832--10174895	8	8.4	8	72	10	53	15	0	4	79	0.89
10174830--10174895	22	3.0	22	84	2	78	16	0	4	78	0.90
10195236--10195400	74	2.3	72	82	6	190	21	20	19	38	1.93
10197598--10197776	46	4.0	46	83	7	231	26	16	33	23	1.95
10197598--10197776	89	2.0	90	85	7	247	26	16	33	23	1.95
10204107--10204159	19	2.8	18	85	5	61	35	7	1	54	1.40
10211824--10211872	21	2.3	21	100	0	98	59	10	22	8	1.56
10212335--10212500	82	2.0	82	91	0	269	21	8	20	49	1.75
10217170--10217210	21	2.0	21	90	0	64	24	19	14	41	1.89
10220369--10220407	19	2.1	19	90	4	62	58	10	12	17	1.61
10227723--10227902	31	5.8	31	82	0	189	27	16	17	38	1.92
10228326--10228373	3	16.3	3	80	4	53	31	0	2	66	1.03
10228424--10228462	18	2.2	18	95	0	69	28	7	20	43	1.79
10229017--10229122	31	3.5	31	92	1	169	38	19	17	23	1.93
10230066--10230147	35	2.3	34	78	16	87	51	4	9	34	1.56
10230166--10230244	31	2.7	30	84	5	99	55	2	6	35	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10230114--10230239	45	2.6	48	82	10	143	53	3	7	35	1.47
10230141--10230230	14	6.1	14	78	10	72	52	4	6	36	1.48
10230168--10230244	14	5.1	15	71	20	54	57	2	5	35	1.35
10233269--10233331	17	3.9	17	79	12	62	36	7	3	52	1.47
10233266--10233442	47	3.6	47	81	13	214	35	10	2	50	1.52
10233631--10233840	85	2.4	87	77	10	209	26	30	18	25	1.98
10234430--10234536	31	3.5	31	89	2	144	27	18	18	35	1.95
10235910--10235942	16	1.9	18	88	11	52	30	6	24	39	1.79
10236353--10236595	31	7.8	31	87	0	288	41	19	12	26	1.87
10238185--10238237	23	2.3	23	93	0	88	49	15	11	24	1.77
10243047--10243081	15	2.3	15	90	0	52	40	28	0	31	1.57
10249840--10249924	35	2.4	34	77	16	93	76	2	3	17	1.04
10249887--10249921	12	2.9	12	82	0	52	80	0	2	17	0.84
10250347--10250389	23	1.9	23	86	13	63	16	0	39	44	1.48
10251350--10251379	15	1.9	16	93	6	53	86	3	0	10	0.67
10263983--10264644	62	10.7	62	88	2	892	28	14	21	36	1.92
10264912--10265005	8	10.8	8	73	14	71	76	1	4	18	1.00
10264942--10265006	21	3.0	21	73	10	60	78	1	3	16	0.96
10264914--10264996	13	5.8	13	70	18	58	75	1	3	19	1.01
10264912--10265009	44	2.2	45	87	7	137	76	1	4	18	1.00
10270225--10270282	25	2.3	25	90	0	89	34	15	5	44	1.69
10271584--10271655	35	2.1	35	100	0	144	38	8	25	27	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10272772--10272873	49	2.1	50	83	1	125	34	5	19	40	1.76
10272826--10272887	21	2.8	22	80	14	65	40	3	19	37	1.68
10277889--10277968	33	2.4	34	85	4	108	33	22	8	35	1.85
10278092--10278133	22	1.9	23	85	9	61	23	35	4	35	1.76
10278553--10278776	114	2.0	113	93	0	376	31	21	5	41	1.77
10286115--10286157	2	21.5	2	100	0	86	48	0	0	51	1.00
10290381--10290458	31	2.5	31	80	10	81	26	11	5	56	1.55
10293868--10294100	126	1.9	124	81	8	283	37	11	10	40	1.76
10294275--10294328	27	2.0	27	89	7	83	31	16	38	12	1.87
10304836--10304943	36	3.0	36	95	0	189	30	25	6	37	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59