genome.fa.s10.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  38  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13792493--13792535	18	2.3	19	80	19	54	25	27	16	30	1.97
13792718--13793096	78	4.9	78	87	0	517	20	25	18	36	1.95
13796392--13796644	117	2.2	118	90	0	400	42	27	12	17	1.85
13796454--13796672	117	1.9	117	86	2	305	46	25	11	16	1.80
13796434--13796960	214	2.4	211	86	7	677	44	25	11	17	1.83
13796552--13796951	111	3.8	100	82	12	425	45	25	12	17	1.83
13796637--13796960	111	2.9	111	86	3	463	44	25	12	18	1.84
13797596--13797655	30	2.0	30	90	0	93	33	26	13	26	1.93
13798237--13798436	88	2.3	88	89	0	303	37	25	11	26	1.90
13798213--13798436	87	2.6	87	86	0	304	37	25	12	24	1.91
13802253--13802279	8	3.4	8	100	0	54	40	0	0	59	0.98
13803512--13803547	3	12.0	3	93	0	63	63	0	0	36	0.94
13803797--13804015	108	2.0	108	92	0	366	30	23	15	30	1.96
13804549--13804608	30	2.1	29	81	6	68	30	8	23	38	1.84
13807165--13807395	60	3.9	57	81	7	239	24	29	18	28	1.98
13807141--13807395	120	2.1	119	80	7	275	24	29	17	27	1.97
13810695--13810769	11	7.2	11	69	15	61	0	33	1	65	1.01
13810718--13810769	20	2.6	20	90	6	79	0	34	1	63	1.06
13810713--13810751	15	2.5	16	88	12	55	0	35	0	64	0.94
13814851--13814907	30	1.9	30	92	0	96	49	5	8	36	1.57
13821315--13821367	28	1.9	27	84	3	70	28	22	16	32	1.96
13821830--13821885	21	2.7	21	80	0	67	50	1	0	48	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13823780--13823811	2	16.0	2	100	0	64	0	50	0	50	1.00
13823814--13823844	13	2.4	13	94	0	53	48	0	0	51	1.00
13823814--13823844	15	2.1	15	93	0	53	48	0	0	51	1.00
13825102--13825139	8	4.8	8	93	0	67	47	0	10	42	1.38
13825821--13825907	33	2.6	33	83	7	95	31	4	1	63	1.22
13831873--13831934	21	3.0	21	71	2	63	51	1	0	46	1.10
13835102--13835525	212	2.0	211	99	0	830	38	5	4	51	1.46
13836743--13837017	60	4.6	59	80	8	254	25	28	17	28	1.97
13838527--13838564	19	2.0	19	94	0	67	28	0	31	39	1.57
13842081--13842119	20	2.0	20	84	0	51	20	12	33	33	1.91
13843312--13843345	2	17.0	2	87	0	50	44	2	2	50	1.32
13843389--13843541	42	3.6	43	85	6	213	21	33	20	24	1.97
13843389--13843538	43	3.5	44	87	7	211	21	33	21	24	1.97
13844921--13844980	21	2.9	21	94	0	111	38	11	20	30	1.88
13844902--13844992	21	4.3	21	85	2	103	37	14	17	30	1.90
13854164--13854203	20	2.0	20	85	0	53	15	37	10	37	1.80
13854835--13854954	38	3.2	38	83	2	161	25	11	35	28	1.91
13859178--13859216	2	19.5	2	100	0	78	51	0	0	48	1.00
13860916--13861036	38	3.2	38	77	6	136	24	9	34	30	1.88
13877348--13877372	13	1.9	13	100	0	50	48	8	0	44	1.32
13879048--13879080	16	2.1	16	94	0	57	30	15	33	21	1.94
13881094--13881131	20	1.9	20	88	0	58	26	5	23	44	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13885036--13885181	62	2.3	62	85	3	195	26	18	32	23	1.97
13885255--13885301	2	24.0	2	95	4	87	51	0	0	48	1.00
13889952--13889994	17	2.6	17	81	3	61	25	18	6	48	1.73
13903690--13903714	2	12.5	2	100	0	50	52	0	0	48	1.00
13909899--13910021	43	2.9	43	82	4	151	22	31	16	29	1.96
13909869--13910021	43	3.6	42	80	6	150	22	32	15	29	1.95
13913050--13913080	16	1.9	16	93	0	53	22	32	16	29	1.95
13917593--13917798	73	2.8	73	88	2	306	44	13	19	22	1.86
13928470--13928608	43	3.3	43	90	2	208	21	34	23	20	1.97
13936102--13936200	42	2.4	42	89	3	146	20	28	25	26	1.99
13947806--13947980	68	2.6	68	84	5	221	27	12	24	35	1.92
13947856--13947995	68	2.1	68	83	4	176	27	15	23	33	1.94
13949585--13949785	73	2.8	73	87	0	303	23	21	13	40	1.89
13951409--13951434	12	2.2	12	100	0	52	15	0	42	42	1.47
13952319--13952511	95	2.0	95	94	0	341	38	16	21	24	1.93
13962837--13962882	24	1.9	24	90	0	74	32	8	2	56	1.42
13980342--13980366	5	5.0	5	100	0	50	20	0	0	80	0.72
13980983--13981043	22	2.8	22	84	0	77	21	8	22	47	1.77
13981062--13981237	26	7.3	23	73	11	131	34	25	13	26	1.93
13981142--13981237	26	3.7	26	86	5	149	34	23	16	25	1.95
13981224--13981279	21	2.7	21	85	0	85	33	28	19	17	1.95
13981395--13981519	59	2.1	60	82	7	148	41	19	8	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13982965--13985813	419	6.6	433	84	5	3091	45	11	12	30	1.77
13983398--13985858	846	2.9	841	83	5	3028	45	11	12	31	1.77
13989078--13989202	43	2.9	43	82	5	155	23	17	37	21	1.94
13990139--13990184	20	2.3	20	88	7	67	32	4	17	45	1.68
13998178--13998223	20	2.3	20	88	7	67	32	4	17	45	1.68
13998268--13998320	28	1.9	27	88	3	79	30	18	22	28	1.98
13998268--13998326	28	2.1	28	84	6	75	30	20	23	25	1.98
14012093--14012157	29	2.2	29	86	0	85	47	18	6	27	1.72
14025565--14025708	63	2.3	63	81	4	166	45	19	12	22	1.84
14026245--14026297	28	1.9	28	88	3	81	30	16	26	26	1.97
14027289--14027324	16	2.2	17	90	5	56	8	27	0	63	1.23
14028137--14028338	55	3.7	55	85	1	271	26	13	32	26	1.94
14028139--14028338	110	1.8	110	90	2	321	26	14	32	27	1.94
14030007--14030112	30	3.5	30	97	0	194	35	22	9	32	1.86
14033295--14033381	45	1.9	45	95	0	156	47	11	20	20	1.81
14034634--14034742	24	4.6	24	69	15	66	37	18	19	24	1.94
14034634--14034777	69	2.0	72	88	6	215	38	18	18	25	1.93
14034709--14034832	45	2.8	45	83	4	153	39	17	15	27	1.90
14034803--14034851	24	2.0	24	88	0	71	42	14	18	24	1.87
14034830--14034939	45	2.4	45	90	0	166	36	16	18	29	1.92
14034634--14034984	114	3.1	114	80	4	429	37	17	17	27	1.92
14035600--14035659	1	60.0	1	86	0	84	1	1	3	93	0.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14035600--14035659	17	3.6	17	90	2	95	1	1	3	93	0.45
14039478--14039518	19	2.2	19	91	4	66	46	4	0	48	1.23
14045816--14045940	47	2.7	47	76	7	146	28	15	32	24	1.95
14045909--14046012	24	4.5	24	68	16	92	26	20	32	20	1.97
14046003--14046121	53	2.3	53	88	4	170	24	19	29	26	1.98
14046590--14047071	31	15.5	31	83	1	525	25	15	20	39	1.91
14046965--14047101	31	4.4	31	85	1	114	27	18	16	37	1.92
14048733--14049228	156	3.2	154	83	4	593	35	19	18	26	1.95
14049582--14049817	62	3.8	62	89	1	339	19	20	20	39	1.92
14049668--14049848	93	2.0	92	81	7	215	19	21	19	38	1.93
14049555--14049853	31	9.6	31	72	6	194	20	19	19	40	1.92
14051352--14051402	16	3.2	16	86	5	68	33	15	3	47	1.64
14051352--14051412	16	4.0	15	81	8	61	32	14	4	47	1.66
14051705--14051811	55	1.9	55	84	0	142	23	23	23	29	1.99
14052045--14052344	31	9.7	31	81	0	339	21	17	20	41	1.91
14055129--14055269	72	2.0	72	84	5	187	39	17	23	19	1.93
14066174--14066393	111	2.0	110	83	1	280	52	15	6	25	1.67
14071004--14071041	19	2.0	19	94	0	67	28	0	28	42	1.56
14074210--14074451	61	4.0	61	86	1	335	24	34	16	24	1.95
14074210--14074431	121	1.8	121	89	2	347	25	35	15	23	1.94
14074799--14074852	2	27.0	2	96	0	99	48	0	0	51	1.00
14075221--14075317	31	3.1	31	85	5	133	2	39	8	50	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14075312--14075355	17	2.5	18	82	14	56	0	29	0	70	0.88
14076739--14076768	2	15.0	2	100	0	60	50	0	0	50	1.00
14078278--14078323	22	2.1	22	95	0	83	41	8	23	26	1.83
14089328--14089364	18	2.1	18	89	0	56	62	0	2	35	1.10
14092789--14092934	55	2.6	54	82	2	175	13	9	32	43	1.77
14092971--14093077	23	4.7	23	95	0	178	23	21	31	23	1.98
14093058--14093132	31	2.4	31	86	4	98	21	17	25	36	1.95
14106695--14106772	22	3.6	22	75	13	63	25	6	17	50	1.70
14106807--14107030	78	3.0	74	83	5	295	41	25	8	25	1.84
14106784--14107102	26	13.3	23	77	10	125	40	25	9	25	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59