genome.fa.s10.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  52  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18819943--18820222	142	2.0	139	86	5	377	42	14	7	35	1.74
18834260--18834347	37	2.4	37	84	5	108	28	4	21	45	1.71
18835112--18835142	12	2.5	13	94	5	55	35	0	6	58	1.24
18835133--18835203	36	2.0	35	97	0	124	32	2	11	52	1.52
18841870--18841910	3	13.7	3	100	0	82	34	0	0	65	0.93
18843787--18843812	3	8.7	3	100	0	52	34	0	0	65	0.93
18855378--18855410	16	2.1	16	88	5	50	3	9	3	84	0.82
18856429--18856469	16	2.6	16	81	18	50	63	4	7	24	1.40
18862088--18862150	13	5.1	13	77	7	60	11	12	1	74	1.14
18862101--18862170	20	3.6	21	69	21	62	14	11	1	72	1.18
18862104--18862162	25	2.4	25	85	5	75	15	13	1	69	1.27
18862101--18862165	12	5.4	11	73	20	58	13	12	1	72	1.20
18862168--18862223	20	2.7	20	78	15	60	8	3	8	78	1.07
18877065--18877105	16	2.6	16	81	18	50	63	4	4	26	1.35
18878891--18878938	25	1.9	25	91	0	78	43	2	2	52	1.24
18878881--18878970	40	2.2	41	84	7	114	43	2	1	53	1.20
18878846--18878958	15	7.7	15	69	14	74	44	1	1	52	1.22
18879017--18879085	16	4.5	15	71	20	52	52	1	1	44	1.19
18879154--18879275	26	4.9	24	74	21	101	44	2	1	51	1.24
18879144--18879235	15	5.7	15	73	17	62	41	3	1	54	1.24
18879201--18879273	15	5.1	14	72	19	53	45	1	2	50	1.24
18900910--18900965	27	2.0	29	89	6	89	32	0	1	66	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18905258--18905338	33	2.4	33	80	10	85	41	18	6	33	1.75
18905375--18905425	23	2.2	23	82	6	59	43	1	7	47	1.43
18908169--18908200	13	2.5	13	89	0	55	37	0	18	43	1.51
18910894--18910925	2	16.0	2	93	0	55	50	3	0	46	1.17
18916451--18916480	16	1.9	15	93	6	51	73	0	26	0	0.84
18916527--18916561	16	2.3	15	90	5	52	34	0	0	65	0.93
18928935--18928984	21	2.4	21	96	0	91	18	16	28	38	1.91
18934482--18934515	5	6.6	5	93	6	59	61	0	38	0	0.96
18945209--18945233	3	8.3	3	100	0	50	32	0	32	36	1.58
18949474--18949642	36	4.9	36	91	5	251	19	5	50	24	1.68
18949553--18949702	15	9.6	15	67	26	64	20	5	50	24	1.69
18949589--18950816	45	27.4	45	72	15	482	18	5	49	26	1.68
18949589--18950816	30	41.1	30	74	8	422	18	5	49	26	1.68
18949585--18950812	15	82.2	15	65	22	229	18	5	49	26	1.68
18949589--18950806	75	16.3	75	77	10	802	18	5	49	26	1.68
18950564--18950703	43	3.2	42	83	8	133	20	3	50	26	1.64
18950757--18950781	9	2.8	9	100	0	50	20	0	56	24	1.43
18950783--18950816	15	2.3	15	94	0	59	23	5	50	20	1.70
18951114--18951160	22	2.1	22	81	14	53	44	6	4	44	1.49
18959069--18959200	43	3.1	42	84	6	167	44	12	17	25	1.84
18972877--18972906	15	2.0	15	93	0	51	36	6	23	33	1.81
18973118--18973205	33	2.6	33	85	1	113	28	4	1	65	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18976709--18976742	15	2.2	16	89	5	52	82	0	5	11	0.83
18981040--18981085	20	2.3	20	88	7	67	17	0	4	78	0.91
18984688--18984791	2	51.5	2	96	1	172	47	2	0	49	1.16
18989797--18989825	2	14.5	2	100	0	58	51	0	0	48	1.00
18989889--18989914	2	13.0	2	100	0	52	50	0	0	50	1.00
18989766--18989942	88	2.1	84	88	10	261	54	2	10	32	1.47
18999424--18999461	19	2.0	19	94	0	67	28	0	28	42	1.56
19005399--19005443	23	2.0	23	95	0	81	37	11	11	40	1.76
19005911--19005956	23	2.0	23	100	0	92	39	8	13	39	1.75
19006899--19006944	23	2.0	23	100	0	92	39	8	13	39	1.75
19007318--19010071	589	4.7	589	82	4	3165	35	13	15	35	1.87
19013617--19013644	4	7.0	4	100	0	56	50	25	0	25	1.50
19018259--19018298	14	3.1	14	82	13	50	27	0	0	72	0.85
19018247--19018310	9	6.8	10	76	21	59	26	1	0	71	0.94
19018264--19018304	17	2.5	17	88	4	57	26	0	0	73	0.84
19018258--19018308	17	3.1	17	76	15	54	25	0	0	74	0.82
19018290--19018377	14	6.5	13	73	18	63	21	7	1	69	1.21
19018293--19018365	27	2.6	28	75	14	69	21	8	1	68	1.23
19018247--19018382	30	4.7	29	74	13	102	23	5	0	69	1.15
19018350--19018394	22	2.0	23	86	4	65	20	8	0	71	1.12
19018982--19019025	23	1.9	23	90	0	70	15	4	0	79	0.89
19020502--19020594	22	4.3	22	80	1	98	36	13	22	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19020600--19020836	119	2.0	119	86	0	330	35	14	22	27	1.93
19020719--19021113	141	2.8	141	91	2	632	35	15	22	27	1.94
19022276--19022431	78	2.0	78	88	2	233	14	24	9	51	1.71
19022416--19022451	18	1.9	18	88	5	54	16	0	0	83	0.65
19022413--19022452	21	2.0	21	85	5	55	17	0	0	82	0.67
19022836--19022873	18	2.1	18	90	5	58	15	21	0	63	1.31
19023285--19023309	12	2.1	12	100	0	50	0	8	0	92	0.40
19023976--19024117	73	2.0	72	98	1	275	19	18	5	56	1.60
19029670--19029709	15	2.6	15	84	4	53	10	7	0	82	0.84
19032714--19032836	65	1.9	65	98	1	239	43	13	13	29	1.82
19032854--19033506	217	3.0	217	82	2	817	40	13	16	29	1.86
19033674--19034063	215	1.8	217	84	2	534	40	12	16	31	1.85
19034951--19035040	7	12.4	7	75	18	62	17	2	1	78	0.91
19034956--19035036	33	2.4	34	80	19	91	18	2	1	77	0.94
19034951--19035040	25	3.7	23	76	14	92	17	2	1	78	0.91
19039143--19039195	24	2.4	21	80	20	63	15	3	11	69	1.31
19039143--19039198	22	2.5	22	83	16	71	16	3	12	67	1.35
19039770--19039883	58	2.0	56	98	1	210	54	3	28	12	1.54
19041644--19041706	26	2.4	27	78	7	67	71	1	0	26	0.95
19041661--19041698	8	4.9	8	84	15	53	73	0	0	26	0.83
19041649--19041706	18	3.4	16	78	19	55	74	1	0	24	0.92
19053706--19054242	38	13.9	38	83	6	557	24	14	18	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19053795--19054242	37	11.8	37	84	5	502	22	14	19	43	1.87
19053795--19054242	113	3.9	111	82	6	493	22	14	19	43	1.87
19054263--19054296	14	2.6	14	90	9	54	88	11	0	0	0.52
19054243--19054297	23	2.3	23	81	3	65	85	9	1	3	0.79
19057525--19057582	2	29.5	2	82	3	73	50	5	1	43	1.35
19060623--19060894	92	2.9	92	83	3	350	22	20	16	40	1.91
19065743--19065797	23	2.4	23	84	0	83	60	0	0	40	0.97
19096805--19096832	2	14.0	2	100	0	56	0	50	0	50	1.00
19097727--19097887	28	5.8	28	74	2	128	41	10	8	39	1.69
19097729--19097887	55	2.9	55	77	3	158	42	10	7	39	1.68
19097732--19097887	83	1.9	83	82	0	195	42	10	7	40	1.66
19097817--19097897	27	3.0	27	85	1	99	44	7	6	41	1.57
19107193--19107220	13	2.2	13	100	0	56	42	0	25	32	1.55
19107941--19108019	27	2.9	27	76	0	95	44	11	5	39	1.62
19108122--19108198	29	2.7	29	84	8	102	33	12	10	42	1.77
19109276--19109333	30	2.0	29	83	10	73	55	10	6	27	1.59
19115715--19115977	123	2.1	123	90	1	420	24	20	15	38	1.92
19137717--19137766	21	2.3	23	74	19	54	52	0	2	46	1.12
19143134--19143339	55	3.8	53	80	5	187	41	13	8	36	1.75
19143120--19143364	27	8.9	27	76	4	204	41	13	8	36	1.76
19143128--19143343	83	2.6	83	80	3	238	41	13	8	36	1.75
19159230--19159267	20	1.9	20	100	0	76	18	26	18	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19159633--19159714	30	2.8	29	72	17	71	30	8	8	52	1.62
19159792--19159856	33	2.0	33	87	6	96	36	7	15	40	1.76
19184922--19185021	39	2.6	39	88	4	150	57	18	7	18	1.62
19188813--19189200	78	5.0	78	83	3	473	18	29	16	35	1.93
19203773--19203868	38	2.5	38	84	6	122	19	15	40	23	1.90
19205029--19205107	33	2.3	33	82	8	86	58	18	5	17	1.57
19209814--19209886	36	2.0	36	97	0	137	31	21	6	39	1.80
19217579--19217652	36	2.0	37	89	2	114	27	18	9	44	1.81
19224722--19224770	2	26.5	2	80	15	52	51	0	0	48	1.00
19224704--19224779	18	4.1	18	77	16	66	48	1	1	48	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59