genome.fa.s10.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  55  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19914898--19914983	34	2.4	35	82	7	102	45	0	1	53	1.07
19915010--19915178	42	3.9	42	73	15	139	40	3	2	52	1.31
19915030--19915199	16	11.6	15	65	20	74	40	2	1	54	1.26
19915014--19915178	88	1.9	86	83	7	208	40	3	2	53	1.32
19915117--19915238	42	2.9	41	85	7	145	40	2	2	54	1.27
19917952--19918020	27	2.5	28	81	6	88	44	0	1	53	1.09
19918111--19918149	18	2.1	18	86	13	53	46	2	5	46	1.38
19918164--19918254	41	2.2	42	86	9	127	45	2	0	52	1.13
19918197--19918262	20	3.3	21	73	23	70	45	0	0	54	0.99
19926190--19926248	24	2.5	24	82	0	82	5	44	16	33	1.70
19926379--19926425	24	2.0	24	91	0	76	34	19	23	23	1.97
19926380--19926435	24	2.3	24	84	0	67	32	19	28	19	1.97
19928055--19928106	26	2.0	26	96	0	95	21	13	7	57	1.61
19928048--19928113	26	2.8	23	79	18	73	22	13	6	57	1.58
19928346--19928526	92	2.0	92	95	0	326	28	12	23	34	1.92
19928364--19928550	92	2.0	92	86	0	257	29	13	23	33	1.93
19930755--19930873	63	1.9	62	89	1	184	17	26	19	36	1.94
19931642--19931828	48	3.8	48	72	12	178	37	25	12	24	1.91
19931562--19931825	103	2.6	101	85	2	348	37	24	13	24	1.91
19934425--19934472	23	2.1	23	88	0	69	41	16	27	14	1.87
19944920--19944965	25	1.9	23	82	8	56	58	2	0	39	1.10
19949752--19949789	13	3.0	13	80	7	51	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19950262--19950323	22	2.7	23	77	5	72	48	0	3	48	1.17
19954375--19954422	13	3.7	13	81	10	53	18	2	8	70	1.22
19960876--19961030	66	2.4	66	82	4	188	30	27	14	27	1.95
19961529--19961579	25	2.0	25	100	0	102	27	13	7	50	1.69
19968782--19968885	32	3.2	31	75	12	91	28	25	16	29	1.97
19968750--19968905	67	2.4	65	83	4	186	30	27	13	28	1.94
19977855--19977943	20	4.4	19	72	9	61	73	0	5	21	1.04
19977894--19977945	17	3.0	18	77	11	54	73	0	1	25	0.94
19977911--19977945	14	2.4	15	90	4	54	71	0	2	25	1.00
19977859--19977934	27	2.9	25	75	14	73	73	0	5	21	1.02
19990129--19990216	8	11.1	8	75	17	78	73	0	3	22	0.97
19990149--19990221	10	8.3	9	72	18	57	73	0	4	21	0.99
19990125--19990222	20	4.5	22	71	20	66	73	0	3	23	0.97
19990121--19990221	18	5.8	17	75	16	91	75	0	2	21	0.94
19990143--19990221	26	3.0	26	80	14	92	73	0	3	22	0.99
19990132--19990221	41	2.2	40	82	11	110	73	0	3	23	0.98
19990349--19990423	9	8.4	9	72	19	50	76	4	2	17	1.06
19990364--19990425	23	2.7	23	80	12	65	74	3	1	20	1.05
19992900--19993137	75	3.1	75	84	7	318	21	12	19	46	1.82
19992893--19993137	37	6.4	37	85	7	303	21	12	18	47	1.81
19995242--19995330	20	4.4	19	73	9	70	73	0	4	22	1.02
19995281--19995332	17	3.0	18	77	11	54	73	0	1	25	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19995246--19995321	27	2.9	25	75	14	73	73	0	3	22	0.99
19998549--19998673	63	2.0	64	82	6	155	39	11	15	34	1.83
20008876--20008910	16	2.1	16	89	5	52	62	0	11	25	1.28
20008856--20008915	20	3.2	19	75	18	54	65	1	10	23	1.32
20021446--20021516	36	2.0	36	100	0	142	22	14	25	38	1.92
20022871--20022904	2	17.0	2	100	0	68	50	0	0	50	1.00
20047512--20047558	16	3.1	16	87	9	71	78	0	0	21	0.75
20047520--20047558	12	3.4	12	82	13	55	79	0	0	20	0.73
20047515--20047555	7	5.6	7	83	11	55	80	0	0	19	0.71
20065415--20065468	2	27.5	2	80	10	58	46	0	1	51	1.11
20071745--20071782	2	19.0	2	100	0	76	50	0	0	50	1.00
20079431--20079483	2	27.5	2	81	7	65	47	1	1	49	1.23
20090561--20091371	407	2.0	406	95	0	1460	28	27	12	31	1.93
20094547--20094600	22	2.5	20	77	14	54	77	1	1	18	0.95
20094692--20094736	14	3.1	14	93	6	72	77	0	2	20	0.87
20094695--20094736	5	8.4	5	92	7	68	78	0	2	19	0.86
20094740--20094771	2	16.0	2	100	0	64	50	0	0	50	1.00
20116885--20116964	29	2.8	29	84	0	106	42	7	27	22	1.80
20120194--20120310	36	3.3	36	80	3	139	49	11	6	32	1.65
20120196--20120353	71	2.2	70	82	6	185	49	12	7	30	1.68
20120794--20120973	42	4.5	42	72	20	143	26	12	21	40	1.88
20120843--20120904	31	2.0	31	84	6	81	27	14	22	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20120802--20120946	73	2.0	73	90	0	227	26	12	22	37	1.90
20126367--20126405	16	2.5	15	84	12	51	79	0	15	5	0.90
20127105--20127189	6	13.8	6	70	19	52	77	1	18	2	0.94
20127140--20127186	23	1.9	23	87	12	67	76	2	21	0	0.89
20134319--20134367	24	2.0	24	100	0	98	36	16	26	20	1.93
20134405--20134441	14	2.6	14	100	0	74	21	27	24	27	1.99
20134496--20134537	14	3.0	14	76	13	50	23	0	7	69	1.13
20137930--20137964	18	1.9	19	88	11	56	5	17	2	74	1.14
20151444--20151562	59	2.0	58	82	4	141	36	22	15	25	1.94
20155195--20155261	2	34.5	2	85	5	93	47	1	1	49	1.19
20172137--20172281	48	3.0	48	100	0	290	39	16	16	27	1.90
20173732--20173774	22	2.0	22	85	0	59	53	11	6	27	1.63
20175292--20175331	18	2.3	17	91	4	62	52	0	32	15	1.43
20175837--20175957	35	3.5	35	84	0	134	20	15	16	47	1.83
20178298--20178365	34	2.0	34	97	0	127	39	26	16	17	1.90
20179105--20179164	3	20.3	3	90	10	97	30	0	0	70	0.88
20186919--20186970	27	1.9	27	88	0	77	30	19	15	34	1.93
20193094--20193135	18	2.5	16	85	11	57	19	9	9	61	1.53
20205082--20205133	15	3.3	15	83	5	50	69	1	1	26	1.10
20215043--20215083	13	3.1	14	79	10	50	48	0	7	43	1.30
20216187--20216211	2	12.5	2	100	0	50	48	0	0	52	1.00
20216914--20216969	14	3.9	14	78	17	53	23	0	3	73	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20242169--20242220	21	2.5	21	93	0	86	21	7	25	46	1.77
20242439--20242564	38	3.2	38	78	10	144	23	13	23	39	1.90
20242467--20242563	43	2.2	43	90	1	149	23	12	24	39	1.89
20242441--20242589	81	1.8	81	82	0	190	24	12	24	38	1.90
20251090--20251133	21	2.0	23	82	8	56	52	6	4	36	1.49
20267003--20267049	4	10.8	4	84	15	58	25	0	0	74	0.82
20266995--20267053	9	7.0	9	85	11	72	22	0	0	77	0.76
20274391--20274445	22	2.5	22	78	0	65	45	25	9	20	1.80
20274146--20274661	212	2.5	208	79	7	549	41	22	12	23	1.87
20274648--20274693	22	2.1	22	95	0	83	34	26	8	30	1.86
20277024--20277057	18	2.0	17	88	11	52	2	23	0	73	0.97
20278398--20278461	22	2.9	21	73	11	56	39	26	12	21	1.89
20290424--20290486	32	2.0	32	96	0	117	31	31	15	20	1.94
20293723--20293758	17	2.1	17	94	0	63	19	16	8	55	1.66
20298906--20298938	15	2.3	15	89	5	50	6	0	18	75	1.00
20301473--20301509	11	3.5	11	86	13	51	51	5	18	24	1.67
20302117--20302370	127	2.0	128	87	5	372	34	11	25	28	1.91
20306788--20306850	29	2.2	28	80	5	81	39	9	22	28	1.85
20322058--20322087	15	2.0	15	93	0	51	30	6	16	46	1.73
20324905--20324969	23	2.8	23	90	2	103	24	12	7	55	1.63
20330321--20330351	16	1.9	16	100	0	62	64	9	0	25	1.24
20331553--20331636	31	2.7	30	82	8	98	55	3	14	26	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20332292--20332337	18	2.5	19	82	6	60	76	2	0	21	0.90
20332856--20332934	31	2.6	31	80	17	94	29	17	2	50	1.59
20334849--20334898	26	1.9	26	88	8	75	26	10	16	48	1.77
20334833--20335076	76	3.1	78	80	8	246	31	13	13	41	1.83
20335023--20335122	45	2.2	45	80	3	112	36	16	14	34	1.88
20334947--20335238	121	2.4	121	81	3	329	31	14	15	38	1.88
20335136--20335238	45	2.3	45	79	12	122	29	14	18	37	1.90
20337739--20337776	3	12.7	3	94	0	67	68	2	0	28	1.03
20340273--20340664	201	2.0	201	86	4	558	26	21	17	34	1.95
20341318--20341360	15	2.7	16	92	7	70	74	0	0	25	0.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59