genome.fa.s10.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  32  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11703531--11703654	42	3.0	42	92	1	196	21	33	24	20	1.97
11721873--11721910	20	2.0	20	89	5	60	21	23	15	39	1.92
11723197--11723289	39	2.3	40	83	1	116	24	18	23	33	1.97
11732724--11732791	33	2.1	33	100	0	136	23	16	22	38	1.93
11736386--11736410	13	1.9	13	100	0	50	48	0	0	52	1.00
11737501--11737540	19	2.0	20	95	4	73	42	27	0	30	1.56
11739750--11739803	28	2.0	27	81	3	63	35	20	20	24	1.96
11752824--11752848	13	1.9	13	100	0	50	44	0	8	48	1.32
11756580--11756618	15	2.6	15	87	0	51	20	23	2	53	1.57
11756831--11757007	75	2.5	71	87	5	232	37	12	10	40	1.77
11759207--11759288	36	2.3	36	85	6	114	30	32	13	23	1.93
11760163--11760196	17	1.9	18	88	5	52	76	2	20	0	0.92
11763088--11763112	13	1.9	13	100	0	50	48	4	8	40	1.51
11779830--11779951	43	2.9	43	82	3	124	27	18	32	21	1.96
11786850--11786952	38	2.6	39	78	6	120	23	40	16	19	1.91
11797456--11797554	19	5.1	19	67	9	65	22	39	16	22	1.92
11797453--11797558	38	2.7	39	84	5	126	23	39	15	21	1.91
11797944--11798051	54	2.0	54	96	0	198	42	24	10	23	1.84
11797945--11798030	27	3.2	27	64	18	70	41	24	10	23	1.85
11799156--11799256	53	1.9	53	87	0	148	20	18	31	28	1.97
11800944--11800972	10	2.7	11	89	10	51	17	27	6	48	1.72
11812050--11812219	59	2.9	57	81	7	173	37	14	9	39	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11812105--11812219	28	4.0	30	81	12	141	37	14	8	39	1.77
11814958--11814983	10	2.6	10	100	0	52	23	11	30	34	1.90
11817155--11817763	172	3.6	172	82	5	686	32	14	14	37	1.87
11817609--11817915	152	2.0	150	83	3	375	31	14	15	38	1.88
11819250--11819367	42	2.8	42	93	0	191	20	19	34	25	1.96
11821669--11822384	358	2.0	357	97	0	1360	29	22	7	39	1.82
11823238--11823276	11	3.5	11	82	0	51	46	15	5	33	1.68
11823270--11823326	22	2.6	22	85	0	78	43	21	5	29	1.74
11825990--11826032	2	21.5	2	100	0	86	48	0	0	51	1.00
11826600--11826651	19	2.7	19	100	0	104	44	0	0	55	0.99
11826914--11827245	171	1.9	169	81	4	389	33	14	15	37	1.87
11827227--11827403	89	2.0	89	82	8	218	28	14	15	41	1.86
11827410--11827883	172	2.8	173	77	3	474	32	16	15	35	1.90
11827815--11827980	89	1.9	89	79	2	190	30	14	15	39	1.87
11827906--11828308	170	2.4	170	82	3	461	29	14	16	39	1.88
11828076--11829091	260	3.9	258	82	4	985	32	15	13	38	1.87
11828506--11828678	89	1.9	88	85	6	233	32	15	11	40	1.83
11828766--11828942	89	2.0	89	80	4	196	34	19	10	35	1.87
11829029--11829387	172	2.1	171	80	6	406	30	15	15	38	1.89
11828855--11829414	170	3.3	171	77	7	464	31	15	15	37	1.89
11828855--11829447	171	3.5	170	77	6	463	31	15	15	38	1.88
11829368--11829535	89	1.9	89	85	4	232	30	14	14	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11828690--11829810	601	1.9	600	82	4	1436	31	15	15	37	1.88
11829029--11830138	426	2.6	427	82	4	1236	30	14	15	39	1.87
11829624--11830395	259	3.0	253	78	7	690	31	13	15	39	1.86
11830053--11830228	89	2.0	89	87	0	253	33	15	14	36	1.87
11830139--11831005	170	5.1	171	81	5	891	31	14	15	38	1.88
11830139--11830989	341	2.5	339	81	6	922	31	14	15	38	1.88
11832632--11832669	13	2.9	13	81	14	51	68	0	31	0	0.90
11834646--11835936	171	7.5	169	77	6	1139	32	14	13	39	1.85
11834656--11835937	343	3.7	340	79	6	1307	31	14	13	39	1.85
11835678--11836196	259	2.0	260	81	5	613	32	13	14	40	1.84
11835937--11837003	170	6.3	171	78	5	892	33	14	15	37	1.87
11836280--11837780	774	1.9	772	82	3	1876	33	13	14	37	1.87
11837053--11837989	171	5.5	169	77	7	828	33	13	13	38	1.85
11837053--11837989	341	2.7	335	81	8	959	33	13	13	38	1.85
11837909--11838078	89	1.9	89	84	7	229	31	15	12	40	1.85
11836106--11838423	943	2.5	936	78	6	2365	32	14	14	38	1.86
11837992--11838423	171	2.5	173	83	4	527	31	13	14	40	1.85
11838339--11838509	88	1.9	89	83	3	220	30	14	14	40	1.85
11837561--11838811	431	2.9	425	80	4	1384	32	13	14	38	1.86
11846773--11846810	19	2.0	19	100	0	76	42	31	0	26	1.56
11847135--11847509	172	2.2	170	83	3	477	32	15	14	37	1.88
11852602--11852779	89	2.0	89	79	4	189	35	13	13	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11852689--11853618	169	5.5	170	76	7	755	34	13	13	38	1.84
11853161--11853492	164	2.0	162	79	5	355	33	13	13	39	1.84
11853532--11853707	89	2.0	90	85	1	237	31	15	14	38	1.88
11853624--11854612	170	5.8	171	78	5	894	32	13	14	40	1.85
11853628--11854612	342	2.9	338	80	4	991	31	13	14	40	1.84
11862190--11862351	80	2.0	80	95	2	290	51	14	3	30	1.60
11864266--11864299	15	2.3	15	89	0	50	35	26	11	26	1.91
11866389--11867013	313	2.0	312	98	0	1205	22	23	13	40	1.89
11868724--11868829	29	3.9	25	72	14	77	39	21	16	21	1.92
11868750--11868830	29	2.8	29	79	3	92	38	22	17	22	1.93
11876082--11876384	152	2.0	151	100	0	597	30	13	20	34	1.92
11879885--11879927	21	2.0	21	95	0	77	44	13	25	16	1.85
11889726--11889802	25	3.0	24	72	17	73	31	32	18	18	1.95
11891043--11891667	312	2.0	310	96	0	1151	34	22	12	30	1.91
11891834--11891876	22	2.0	22	81	9	52	9	9	9	72	1.30
11893643--11893700	25	2.2	24	80	17	62	41	24	17	17	1.90
11893662--11893781	29	4.3	28	76	10	104	40	21	17	20	1.91
11893641--11893781	58	2.6	54	77	7	142	41	21	17	19	1.91
11897055--11897138	38	2.3	36	84	11	116	26	7	25	41	1.80
11909724--11909774	19	2.7	19	90	0	84	29	19	13	37	1.90
11914771--11914889	43	2.8	43	88	2	168	21	20	37	20	1.94
11914781--11914902	43	2.8	43	85	4	158	22	18	39	19	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11914935--11914965	2	15.5	2	93	0	53	45	0	3	51	1.17
11915260--11915350	39	2.3	40	82	1	103	25	17	24	32	1.97
11930772--11930808	11	3.5	11	88	7	58	18	0	10	70	1.16
11932656--11932723	34	2.0	34	82	0	82	29	13	27	29	1.94
11935370--11935530	81	2.0	80	98	0	304	26	16	17	39	1.90
11945430--11945481	21	2.5	21	90	6	79	19	26	23	30	1.98
11947810--11947891	39	2.1	39	86	0	110	24	13	32	29	1.93
11947835--11947948	39	3.0	39	83	6	137	24	11	35	28	1.90
11958160--11958252	39	2.3	40	90	1	143	32	26	19	21	1.97
11959622--11959659	19	2.0	19	94	0	67	39	15	23	21	1.92
11973075--11973170	43	2.2	43	94	0	165	25	34	17	22	1.96
11978059--11978455	73	5.4	72	79	5	339	38	17	19	24	1.92
11978059--11978455	147	2.7	147	86	1	530	38	17	19	24	1.92
11978056--11978455	220	1.8	221	82	3	520	38	17	19	24	1.93
11985665--11985708	19	2.4	19	88	3	63	43	0	0	56	0.99
11987133--11987200	21	3.2	21	87	2	91	26	19	16	38	1.92
11991695--11991819	35	3.7	35	73	10	123	26	12	27	34	1.91
11991690--11991821	67	2.0	67	93	3	230	25	12	27	35	1.91
11991690--11991790	32	3.1	32	75	10	114	23	11	25	38	1.89
11991699--11991837	67	2.1	67	82	8	167	28	12	26	33	1.92
11994524--11994777	54	4.7	54	84	0	346	26	37	14	22	1.92
11999466--11999675	42	5.0	42	92	0	321	24	33	20	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12001144--12001202	3	20.7	3	77	10	52	32	40	1	25	1.66
12001149--12001211	20	3.2	20	90	2	101	30	41	3	25	1.71
12018343--12018494	43	3.5	42	89	1	214	20	36	19	24	1.95
12018343--12018504	86	1.9	86	88	2	245	20	35	19	24	1.95
12027885--12027939	28	2.0	28	81	0	65	29	25	21	23	1.99
12031254--12031364	43	2.6	43	82	0	132	22	18	36	22	1.94
12031373--12031421	23	2.1	23	92	0	80	26	4	38	30	1.75
12031424--12031461	2	19.0	2	94	0	67	50	2	0	47	1.15
12033576--12033609	10	3.4	10	83	0	50	32	14	35	17	1.91
12037146--12037279	39	3.5	39	85	5	159	26	36	14	22	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59