genome.fa.s10.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  19  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6961970--6962045	40	1.9	40	83	5	100	1	19	0	78	0.81
6965514--6965671	81	2.0	81	90	0	253	43	6	11	39	1.66
6965793--6965835	18	2.4	18	96	0	77	32	4	34	27	1.78
6968643--6968681	16	2.4	16	86	0	51	15	20	28	35	1.93
6984736--6984787	23	2.3	23	93	0	86	51	19	9	19	1.73
6986480--6986516	2	19.5	2	89	10	60	0	51	0	48	1.00
6986480--6986516	17	2.2	17	100	0	74	0	51	0	48	1.00
6986481--6986510	15	2.0	15	100	0	60	0	53	0	46	1.00
6989910--6989967	1	58.0	1	100	0	116	0	0	0	100	0.00
6991092--6991302	28	7.5	28	77	3	174	43	17	5	34	1.72
6991122--6991301	55	3.3	55	80	1	207	42	16	6	35	1.74
6991066--6991381	83	3.9	81	77	8	241	40	16	7	35	1.77
6991297--6991351	28	2.0	28	85	3	76	36	9	12	41	1.75
7003954--7004016	22	2.9	22	92	4	101	33	3	22	41	1.70
7009555--7009614	30	2.1	29	81	6	68	31	8	21	38	1.83
7013322--7013380	31	1.9	30	83	10	75	69	11	1	16	1.26
7014960--7014999	21	1.9	21	94	0	71	42	10	17	30	1.82
7015462--7015506	24	1.9	24	86	4	65	66	17	15	0	1.25
7049500--7049540	22	1.9	21	85	5	55	46	4	19	29	1.71
7053104--7053167	28	2.2	29	86	2	85	45	20	6	28	1.75
7055816--7055852	19	1.9	19	100	0	74	43	29	0	27	1.55
7060272--7060366	29	3.2	29	83	4	111	25	14	27	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7063723--7063775	28	1.9	27	88	3	79	28	22	18	30	1.98
7063820--7063865	20	2.3	20	88	7	67	45	17	4	32	1.68
7065158--7065296	40	3.5	40	79	1	152	58	15	2	23	1.51
7065302--7065337	16	2.2	17	95	5	65	36	0	5	58	1.22
7071328--7071365	11	3.5	11	82	7	51	78	2	7	10	1.04
7071557--7071615	28	2.1	28	83	0	73	27	15	28	28	1.96
7071592--7071644	22	2.4	22	93	0	88	24	22	30	22	1.99
7076749--7076783	18	1.9	18	100	0	70	54	17	5	22	1.64
7080405--7080499	29	3.2	29	83	7	95	38	14	9	36	1.79
7080436--7080579	26	5.2	26	74	17	105	31	16	14	37	1.89
7080402--7080499	32	3.3	30	83	9	114	37	14	11	36	1.82
7080474--7080547	24	2.9	24	80	9	76	24	18	17	39	1.92
7080564--7080660	45	2.2	45	88	0	140	25	20	23	29	1.99
7080451--7080624	76	2.2	78	84	6	226	29	18	17	35	1.94
7085907--7086009	38	2.6	40	84	3	138	21	39	17	21	1.92
7089173--7089215	20	2.1	20	83	12	52	30	16	9	44	1.79
7089527--7089602	38	2.0	38	81	0	89	30	21	10	38	1.87
7089806--7089851	20	2.3	20	82	14	51	52	8	13	26	1.69
7091006--7091123	59	2.0	59	96	0	218	37	13	15	33	1.86
7097497--7097536	21	1.9	21	85	10	55	45	12	0	42	1.42
7102276--7102453	73	2.4	72	80	9	193	42	18	17	20	1.89
7107673--7107718	19	2.4	20	82	10	60	54	0	2	43	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7115635--7115687	17	3.1	17	91	0	88	35	22	33	7	1.83
7116037--7116198	73	2.2	73	81	4	184	43	17	17	22	1.88
7120245--7120279	17	2.1	17	94	0	61	8	31	22	37	1.85
7120891--7120923	15	2.2	15	100	0	66	36	6	51	6	1.51
7123091--7123132	21	2.0	21	95	0	75	19	26	19	35	1.95
7123290--7123333	21	2.1	21	83	4	54	22	2	6	68	1.25
7124441--7124475	18	1.9	18	88	0	52	37	0	5	57	1.23
7127053--7127088	17	2.1	17	89	0	54	36	13	11	38	1.81
7127536--7127581	20	2.3	20	92	0	74	30	4	19	45	1.70
7135492--7135537	20	2.3	20	92	0	74	30	4	19	45	1.70
7135582--7135634	28	1.9	27	88	3	79	30	18	22	28	1.98
7135582--7135640	28	2.1	28	84	6	75	30	20	23	25	1.98
7141077--7141121	3	15.7	3	90	9	76	28	0	0	71	0.87
7144858--7144900	17	2.7	15	79	10	50	25	2	11	60	1.43
7144883--7144926	20	2.2	20	87	0	61	22	2	6	68	1.25
7144897--7144936	21	2.0	20	85	5	53	20	2	2	75	1.04
7157558--7157739	42	4.1	42	76	12	148	21	31	18	28	1.97
7157610--7157708	51	1.9	51	89	0	153	21	28	19	31	1.97
7158566--7158605	19	2.3	17	87	12	55	50	10	25	15	1.74
7165463--7165514	19	2.7	19	100	0	104	44	0	0	55	0.99
7166518--7166685	60	2.8	60	88	0	237	23	22	12	41	1.87
7169660--7169710	20	2.5	20	100	0	102	35	7	0	56	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7179395--7179759	80	4.6	80	91	0	552	33	22	10	33	1.88
7184710--7184824	36	3.2	36	67	10	101	27	14	22	34	1.94
7184703--7184836	72	1.9	70	87	6	198	27	13	23	35	1.92
7184980--7185106	49	2.5	51	82	12	172	27	7	11	52	1.65
7185291--7185410	50	2.4	50	87	4	161	40	10	21	28	1.85
7187288--7187332	20	2.2	20	84	4	54	35	8	15	40	1.79
7194701--7194739	17	2.4	17	91	4	62	56	10	5	28	1.54
7194726--7194882	69	2.3	69	80	1	181	38	15	14	32	1.87
7200001--7200040	5	8.2	5	88	5	55	35	22	2	40	1.68
7200075--7200125	15	3.4	15	83	0	66	49	15	3	31	1.63
7213277--7213333	19	3.0	19	82	10	64	66	0	5	28	1.13
7215235--7215271	13	2.6	15	83	8	51	37	5	5	51	1.48
7217838--7217867	2	15.0	2	100	0	60	50	0	0	50	1.00
7219560--7219585	12	2.2	12	100	0	52	23	7	53	15	1.67
7232115--7232141	2	13.5	2	100	0	54	48	0	0	51	1.00
7240770--7240812	2	21.5	2	81	9	52	41	0	6	51	1.29
7240795--7240844	21	2.4	21	75	18	52	30	8	14	48	1.72
7240907--7240990	45	1.9	43	80	9	98	46	9	3	40	1.54
7242427--7242458	17	1.9	17	93	6	57	71	6	6	15	1.26
7246106--7246152	24	2.0	24	91	0	76	36	21	21	21	1.96
7247721--7247777	26	2.3	25	87	6	80	24	14	5	56	1.59
7248078--7248147	23	3.1	23	72	2	61	27	11	25	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7248131--7248281	70	2.2	70	92	0	248	31	9	22	35	1.87
7248439--7248519	23	3.5	22	75	9	65	23	9	33	33	1.88
7248536--7248592	23	2.5	23	82	0	60	22	17	28	31	1.97
7249249--7249297	22	2.2	22	100	0	98	16	32	14	36	1.89
7253692--7254050	118	3.1	116	86	5	478	43	24	12	20	1.85
7253838--7253886	22	2.2	22	78	7	55	48	20	12	18	1.79
7255413--7255462	26	1.9	26	91	0	82	42	24	12	22	1.87
7255421--7255477	26	2.2	26	93	0	96	38	21	14	26	1.91
7255441--7255629	48	3.8	48	70	9	162	36	23	13	26	1.92
7255649--7255684	18	2.0	18	94	0	63	33	36	8	22	1.84
7255643--7255693	18	2.5	20	75	18	52	37	31	7	23	1.83
7258599--7258640	2	21.0	2	100	0	84	50	0	0	50	1.00
7258653--7258703	2	25.5	2	100	0	102	49	0	0	50	1.00
7259479--7259527	10	4.9	10	82	0	53	46	14	4	34	1.63
7261578--7261619	18	2.4	18	80	4	50	64	2	30	2	1.19
7262221--7262277	21	2.8	20	72	5	51	47	7	15	29	1.72
7271227--7271269	16	2.6	17	85	10	54	41	25	20	11	1.86
7271244--7271274	16	1.9	16	93	0	53	35	22	25	16	1.94
7279765--7279893	35	3.8	35	67	14	99	32	23	14	29	1.94
7279773--7279905	67	2.0	67	86	2	187	34	24	14	26	1.94
7280292--7280476	74	2.5	74	81	7	216	25	23	14	36	1.92
7281753--7281819	21	3.2	21	70	4	64	35	11	14	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7281793--7281832	21	2.0	20	85	5	53	40	10	12	37	1.77
7282289--7282331	21	2.0	21	81	0	50	46	4	2	46	1.36
7282429--7282459	16	1.9	16	93	0	53	32	3	3	61	1.28
7287380--7287449	25	2.7	25	82	10	79	48	0	0	51	1.00
7287388--7287512	42	3.0	41	75	18	116	44	0	2	52	1.13
7287802--7287835	16	2.1	16	88	0	50	47	2	0	50	1.16
7290117--7290153	19	1.9	19	88	0	56	13	8	21	56	1.63
7290552--7290614	31	2.0	31	82	11	76	47	1	0	50	1.10
7290567--7290614	15	3.1	15	88	11	71	45	2	0	52	1.12
7303373--7303455	25	3.3	24	70	12	69	21	25	12	40	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59