genome.fa.s10.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  48  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17334770--17334824	29	1.9	28	88	3	83	49	5	29	16	1.68
17335049--17335175	35	3.6	35	79	0	128	21	14	16	48	1.81
17336037--17336103	2	33.5	2	84	0	89	46	2	4	46	1.38
17336099--17336153	27	2.0	27	92	0	92	54	5	3	36	1.41
17338983--17339013	16	1.9	16	100	0	62	38	32	19	9	1.84
17342058--17342199	55	2.5	56	82	3	178	43	14	14	26	1.85
17344781--17344882	26	4.0	26	68	10	75	38	10	17	33	1.85
17344902--17344960	18	3.3	18	78	0	64	38	22	20	18	1.93
17344942--17345017	28	2.7	28	80	15	86	42	21	13	23	1.88
17348703--17348814	57	2.0	57	96	0	206	41	13	17	27	1.87
17356036--17356156	62	2.0	62	93	1	208	32	19	14	33	1.93
17356731--17356769	19	2.1	18	85	4	51	53	15	0	30	1.42
17359968--17359994	2	13.5	2	100	0	54	51	0	48	0	1.00
17362591--17362670	2	40.5	2	83	12	85	56	0	1	41	1.07
17377283--17377355	36	2.0	36	84	5	94	31	10	30	27	1.91
17383422--17383500	30	2.7	29	80	7	97	41	5	0	53	1.23
17384586--17384641	6	9.3	6	78	0	58	42	3	7	46	1.48
17384586--17384641	8	7.0	8	77	0	58	42	3	7	46	1.48
17384593--17384641	10	4.9	10	76	18	57	42	4	6	46	1.47
17384586--17384637	12	4.3	12	85	0	68	42	3	7	46	1.51
17389451--17389504	24	2.2	24	83	6	65	51	0	0	48	1.00
17390386--17390571	28	6.6	28	91	0	264	35	17	20	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17394921--17394959	12	3.2	12	88	0	51	74	5	0	20	1.01
17409974--17410017	2	22.5	2	95	4	81	50	0	0	50	1.00
17410855--17410911	2	28.0	2	96	3	105	49	0	1	49	1.11
17417945--17417999	29	1.9	28	88	3	83	49	5	12	32	1.64
17421319--17421370	23	2.3	24	87	9	74	46	0	0	53	1.00
17421325--17421382	24	2.4	25	80	11	77	48	1	0	50	1.11
17421307--17421389	24	3.4	24	75	12	71	43	2	0	54	1.13
17427906--17427956	4	13.0	4	83	4	68	74	0	0	25	0.82
17430281--17430810	59	9.0	59	92	0	808	35	20	10	32	1.88
17440401--17440455	28	2.0	28	82	7	67	60	16	1	21	1.45
17444344--17444380	14	2.6	15	79	12	51	13	24	24	37	1.91
17447342--17447384	15	2.9	15	79	3	52	23	0	2	74	0.93
17447338--17447402	22	3.0	23	79	18	61	20	1	3	75	1.02
17447533--17447581	9	4.9	9	85	14	53	22	4	0	73	1.00
17447533--17447581	19	2.4	20	83	16	57	22	4	0	73	1.00
17447724--17447761	19	2.0	19	100	0	76	31	15	10	42	1.81
17449005--17449031	14	1.9	14	100	0	54	0	3	14	81	0.82
17449005--17449048	23	1.9	23	81	9	54	2	2	20	75	1.03
17449152--17449193	21	2.0	22	90	4	68	11	16	11	59	1.61
17449408--17449434	14	1.9	14	100	0	54	14	0	0	85	0.61
17451687--17451721	18	1.9	18	94	0	61	68	0	20	11	1.20
17451691--17451739	18	2.8	17	84	6	62	69	4	14	12	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17460026--17460055	2	15.0	2	100	0	60	50	0	0	50	1.00
17461451--17461483	2	16.5	2	87	12	50	51	0	3	45	1.16
17463484--17463544	25	2.4	25	81	5	70	47	6	31	14	1.70
17467893--17468015	53	2.3	54	79	12	130	0	34	1	63	1.10
17468043--17468088	16	3.0	15	84	15	51	2	39	0	58	1.10
17468519--17468559	7	5.9	7	85	8	57	17	0	0	82	0.66
17468520--17468550	13	2.4	13	88	0	53	16	0	0	83	0.64
17468518--17468571	7	7.0	8	81	12	51	22	0	0	77	0.76
17468762--17468823	24	2.6	24	80	7	65	64	4	1	29	1.23
17470948--17471592	356	1.8	349	84	5	868	35	17	21	25	1.95
17479319--17479364	23	2.0	23	91	0	74	36	8	13	41	1.75
17482682--17482730	23	2.1	23	96	0	89	36	10	12	40	1.77
17485286--17485326	10	4.1	10	93	0	55	43	0	7	48	1.30
17485293--17485326	2	17.0	2	93	0	59	47	0	2	50	1.16
17493371--17493396	2	13.0	2	100	0	52	50	0	0	50	1.00
17496546--17496844	151	2.0	151	95	0	535	34	10	12	42	1.77
17498709--17498744	17	2.1	17	89	0	54	36	25	5	33	1.79
17504597--17504654	30	2.0	30	86	3	82	34	24	1	39	1.65
17505654--17505703	21	2.4	20	77	9	55	34	26	14	26	1.94
17511396--17511481	15	5.7	15	77	10	77	27	17	24	30	1.97
17511372--17511477	30	3.5	30	88	0	140	29	18	21	30	1.97
17511681--17511781	35	2.9	35	83	2	123	44	13	16	24	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17513458--17513513	24	2.3	24	84	0	67	19	12	16	51	1.75
17523945--17523988	22	2.0	22	86	0	61	43	18	6	31	1.76
17527793--17527849	18	3.2	18	87	0	78	40	19	8	31	1.82
17527801--17527849	9	5.4	9	82	0	53	38	18	10	32	1.84
17528099--17528144	18	2.6	18	92	0	74	50	21	8	19	1.75
17528180--17528287	41	2.6	41	89	2	146	34	17	18	29	1.94
17529750--17529814	33	2.0	33	87	3	96	30	15	12	41	1.84
17529874--17529947	30	2.5	30	81	0	94	37	10	21	29	1.88
17530295--17530373	24	3.4	22	80	17	81	67	1	5	26	1.19
17530362--17530433	30	2.4	30	90	0	99	56	0	5	36	1.22
17530391--17530491	50	2.0	50	88	3	150	61	0	5	31	1.20
17530481--17530552	14	5.1	14	72	11	58	69	0	4	26	1.06
17530315--17530506	80	2.4	80	82	9	232	61	0	5	31	1.19
17530484--17530544	29	2.1	30	81	3	70	68	0	4	26	1.09
17530513--17530572	26	2.3	27	85	8	79	68	1	6	23	1.22
17540079--17540110	15	2.1	15	100	0	64	31	28	0	40	1.57
17541487--17541525	14	2.6	15	84	12	53	28	2	5	64	1.28
17547081--17547276	35	5.8	32	72	15	164	25	13	26	34	1.93
17547061--17547303	67	3.6	67	89	2	355	25	13	26	34	1.93
17547061--17547289	35	6.9	31	72	12	122	24	14	26	34	1.94
17556256--17556318	31	2.0	31	93	0	108	36	9	15	38	1.81
17564084--17564108	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17569450--17569531	27	2.9	27	72	18	76	54	2	7	35	1.41
17570782--17570821	20	1.9	21	90	10	64	27	10	10	52	1.66
17570472--17572036	252	6.2	251	84	3	1771	32	11	7	48	1.67
17573324--17573504	76	2.3	77	78	3	184	38	12	18	30	1.88
17575306--17575340	16	2.3	15	90	5	52	45	5	5	42	1.51
17576371--17576413	14	3.2	13	80	9	50	51	2	0	46	1.13
17576915--17576948	16	2.2	15	89	5	50	61	0	0	38	0.96
17581889--17581923	17	2.1	17	88	0	52	22	14	57	5	1.59
17583247--17583279	14	2.2	16	89	10	52	36	3	0	60	1.12
17584072--17584117	20	2.3	20	88	7	67	32	4	17	45	1.68
17586921--17587197	28	10.1	27	75	9	132	37	8	12	41	1.73
17586920--17587203	27	10.4	28	76	8	158	37	8	12	41	1.74
17586955--17587198	55	4.4	55	78	5	215	36	8	13	41	1.75
17586949--17587220	110	2.5	109	78	5	284	36	9	13	40	1.77
17592260--17592316	2	28.5	2	94	0	96	50	0	1	47	1.11
17593041--17593082	13	3.1	14	80	13	52	52	0	0	47	1.00
17593143--17593177	18	1.9	18	94	0	61	45	22	11	20	1.82
17593143--17593181	10	4.1	10	83	12	55	48	20	10	20	1.78
17595126--17595251	1	126.0	1	98	0	243	99	0	0	0	0.07
17600732--17600784	10	4.8	11	77	13	56	77	0	22	0	0.77
17600752--17600794	8	5.0	8	81	13	50	79	2	18	0	0.85
17600743--17600784	20	2.1	20	91	8	68	78	0	21	0	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17600730--17600794	18	3.8	17	78	13	62	75	1	23	0	0.89
17600750--17600793	20	2.2	20	84	8	54	81	2	15	0	0.78
17600752--17600801	18	2.9	16	85	11	55	78	2	18	2	0.95
17601000--17601047	25	1.9	25	91	0	78	22	18	27	31	1.97
17604039--17604089	23	2.2	23	82	6	59	39	29	9	21	1.85
17604165--17604221	22	2.6	22	82	0	60	35	28	12	24	1.91
17604180--17604267	22	4.0	21	79	7	86	37	28	11	22	1.89
17605230--17605284	23	2.4	22	90	3	83	49	3	12	34	1.59
17605590--17605633	22	2.0	22	86	4	63	47	11	4	36	1.60
17606986--17607034	24	2.0	24	84	7	64	77	10	6	6	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59