genome.fa.s10.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  8  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2862874--2862920	22	2.1	23	92	4	78	44	14	25	14	1.84
2870707--2870757	18	2.8	18	96	3	93	39	9	9	41	1.71
2873570--2873603	16	2.1	16	94	0	59	67	5	0	26	1.13
2875229--2875286	9	6.6	9	94	4	100	31	12	0	56	1.35
2875234--2875292	17	3.5	17	93	6	95	33	10	0	55	1.33
2875234--2875292	26	2.3	26	86	13	88	33	10	0	55	1.33
2912253--2912296	21	2.1	21	91	0	70	34	18	29	18	1.94
2913332--2913356	12	2.1	12	100	0	50	32	28	16	24	1.96
2915249--2915297	4	12.0	4	79	12	55	20	2	0	77	0.87
2915249--2915293	20	2.2	21	84	11	67	20	2	0	77	0.87
2919646--2919707	30	2.1	30	88	11	92	41	0	16	41	1.48
2923558--2923592	12	2.9	12	91	0	52	60	0	25	14	1.35
2926523--2926551	14	2.0	15	93	6	51	31	13	41	13	1.84
2935675--2935763	33	2.7	31	80	14	90	53	0	1	44	1.07
2935720--2935765	14	3.6	13	81	18	53	47	0	0	52	1.00
2939097--2939148	24	2.2	23	93	3	86	59	0	0	40	0.97
2943341--2943456	59	2.0	59	96	0	214	23	22	27	26	1.99
2947667--2947725	27	2.2	27	93	3	102	44	20	6	28	1.77
2957630--2957670	20	2.0	20	100	0	82	14	34	9	41	1.79
2963337--2963525	70	2.7	70	85	1	272	33	17	24	23	1.96
3003140--3003169	3	10.0	3	100	0	60	0	33	0	66	0.92
3021711--3022157	228	2.0	218	89	5	671	26	23	14	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3029913--3029970	22	2.6	22	81	8	64	24	3	0	72	1.00
3029922--3029979	24	2.3	25	79	11	64	22	3	1	72	1.09
3030645--3030684	19	2.1	19	85	0	53	2	0	12	85	0.71
3037573--3037600	2	14.0	2	100	0	56	0	0	50	50	1.00
3042191--3042216	2	13.0	2	100	0	52	50	0	0	50	1.00
3072406--3072438	2	16.5	2	100	0	66	51	0	0	48	1.00
3073892--3073916	3	8.3	3	100	0	50	32	0	0	68	0.90
3074726--3074953	111	2.0	112	88	2	334	32	21	19	26	1.97
3080962--3081001	18	2.2	18	86	0	53	50	15	5	30	1.65
3083310--3083345	14	2.6	14	100	0	72	13	33	16	36	1.89
3088140--3088178	2	19.5	2	94	0	69	48	0	2	48	1.15
3090275--3090369	46	2.1	46	93	0	163	41	25	7	26	1.81
3094078--3094116	18	2.2	18	86	9	53	51	2	2	43	1.29
3099256--3099296	2	20.5	2	100	0	82	0	51	0	48	1.00
3112012--3112069	12	4.8	12	76	16	50	79	1	3	15	0.95
3112683--3112724	19	2.3	18	84	8	57	35	14	42	7	1.73
3112720--3112786	24	2.5	24	86	13	80	68	0	31	0	0.90
3112720--3112791	23	3.1	23	82	8	74	68	0	31	0	0.90
3115754--3115805	24	2.2	23	86	3	68	32	15	5	46	1.70
3127029--3127084	29	1.9	30	89	7	89	64	0	1	33	1.04
3128850--3128883	17	2.0	17	88	0	50	35	2	2	58	1.28
3139285--3139326	2	21.0	2	95	0	75	0	47	2	50	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3148493--3148589	2	50.0	2	83	13	123	45	0	4	50	1.20
3148629--3148687	2	29.5	2	92	0	100	45	0	3	50	1.18
3156221--3156276	28	2.0	28	82	10	69	32	0	8	58	1.29
3158493--3158537	22	2.0	22	86	0	63	22	11	0	66	1.22
3158775--3158830	15	3.7	15	85	2	76	17	1	1	78	0.92
3158774--3158831	19	3.0	19	72	23	50	17	1	3	77	0.99
3159795--3159842	18	2.6	18	80	3	51	31	4	0	64	1.12
3162787--3162824	20	1.9	20	94	0	67	71	21	7	0	1.11
3169755--3169795	15	2.9	14	85	3	55	56	0	0	43	0.99
3170372--3170438	31	2.2	31	81	5	73	62	2	2	31	1.25
3170911--3170960	20	2.5	20	78	12	57	26	0	2	72	0.96
3170890--3170941	22	2.4	22	78	18	63	26	0	1	71	0.97
3174630--3174672	14	3.1	14	79	0	50	48	0	0	51	1.00
3174634--3174679	15	3.2	15	78	12	51	52	2	0	45	1.13
3174678--3174721	19	2.1	21	84	12	56	59	2	6	31	1.36
3175250--3175316	31	2.2	31	81	5	73	62	2	2	31	1.25
3175750--3175820	33	2.1	34	84	7	92	23	0	0	76	0.79
3175750--3175829	34	2.3	34	84	4	106	25	0	0	75	0.81
3175750--3175828	29	2.7	28	82	7	77	24	0	0	75	0.80
3177045--3177111	31	2.2	31	81	5	73	62	2	2	31	1.25
3180844--3180892	3	16.0	3	87	4	53	34	6	0	59	1.22
3180928--3181013	27	3.2	26	76	11	84	29	23	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3181050--3181108	26	2.3	26	75	0	64	20	28	22	28	1.98
3181480--3181558	5	15.2	5	74	10	52	69	1	1	27	1.04
3181478--3181606	15	8.8	15	71	12	72	66	1	2	29	1.13
3181474--3181557	33	2.6	33	83	12	95	69	1	1	28	1.04
3181584--3181686	33	3.1	33	72	12	93	66	0	3	29	1.16
3181897--3181936	15	2.7	15	92	0	62	37	27	5	30	1.78
3185331--3185422	42	2.2	42	80	3	96	16	22	16	44	1.86
3186217--3186334	45	2.6	45	78	0	146	33	16	9	40	1.81
3200366--3200416	25	2.0	25	88	0	75	29	13	21	35	1.92
3204460--3204543	23	3.7	23	84	6	107	33	29	10	26	1.90
3204525--3204585	23	2.7	22	76	2	68	39	29	9	21	1.85
3204502--3204660	22	7.1	22	76	5	104	41	26	10	22	1.85
3204818--3204914	50	1.9	51	85	6	135	38	22	7	31	1.82
3216101--3216146	19	2.4	20	82	10	60	54	0	2	43	1.12
3219190--3219235	2	23.0	2	95	0	74	45	4	0	50	1.21
3219199--3219240	20	2.1	20	100	0	84	40	9	0	50	1.35
3223011--3223055	22	2.0	23	86	8	65	77	2	4	15	1.02
3229848--3230280	161	2.7	162	81	6	498	37	13	12	36	1.83
3229846--3230327	164	3.0	162	76	9	469	37	13	12	36	1.83
3230427--3230501	28	2.6	29	79	12	82	57	1	6	34	1.33
3238273--3238338	31	2.1	31	83	5	80	51	1	1	45	1.19
3239091--3239150	2	30.0	2	90	6	95	48	1	1	48	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3244559--3244799	122	2.0	119	84	4	313	36	12	7	43	1.71
3246747--3246780	18	1.9	17	88	5	50	23	17	20	38	1.93
3249970--3250070	50	2.0	50	86	0	139	19	21	10	47	1.80
3252657--3252720	29	2.4	26	75	22	62	59	7	1	31	1.35
3253602--3253800	66	3.0	66	92	0	326	20	19	32	28	1.96
3254739--3254791	27	1.9	28	88	3	81	33	0	1	64	1.05
3255352--3255378	12	2.2	12	100	0	54	66	18	7	7	1.40
3259605--3259660	18	3.2	17	80	14	62	66	0	0	33	0.92
3260128--3260165	10	3.9	10	83	16	53	68	0	0	31	0.90
3260131--3260175	18	2.6	17	86	6	63	71	0	2	26	0.98
3260134--3260175	17	2.4	17	92	4	66	73	0	2	23	0.94
3260543--3260633	45	2.0	44	89	2	137	29	19	17	31	1.95
3264362--3264397	3	12.0	3	93	0	63	30	0	69	0	0.89
3264580--3264737	78	2.0	78	100	0	316	26	14	32	25	1.95
3278816--3278867	15	3.2	16	81	8	61	30	3	1	63	1.23
3278816--3278851	16	2.2	17	90	5	56	30	5	0	63	1.17
3284983--3285177	54	3.6	54	83	9	229	37	25	16	20	1.93
3284983--3285176	81	2.4	81	82	1	237	37	25	17	20	1.93
3284978--3285177	27	7.4	27	80	4	188	37	25	16	21	1.94
3285277--3285334	27	2.1	27	83	0	71	37	22	17	22	1.93
3285288--3285355	27	2.5	27	88	4	93	26	23	22	27	1.99
3285654--3285681	14	2.0	14	100	0	56	64	7	14	14	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3285962--3286002	21	2.0	21	85	9	57	53	12	9	24	1.68
3288822--3288861	20	2.0	21	85	14	57	45	2	0	52	1.14
3288866--3288899	17	2.0	17	100	0	68	52	0	0	47	1.00
3288868--3288918	23	2.2	23	82	6	59	47	0	0	52	1.00
3288838--3288925	40	2.2	41	81	8	108	46	1	1	51	1.15
3288864--3288932	16	4.3	16	75	12	61	46	0	0	53	1.00
3292019--3292275	125	2.1	125	83	5	315	35	9	14	40	1.78
3292718--3292757	19	2.0	20	90	4	64	50	0	0	50	1.00
3301701--3301725	2	12.5	2	100	0	50	0	52	0	48	1.00
3311565--3311608	22	2.0	22	82	8	54	40	0	0	59	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59