genome.fa.s10.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  24  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8845570--8845735	68	2.4	67	81	7	217	37	9	18	33	1.84
8845846--8845915	31	2.3	31	85	2	88	27	21	31	20	1.98
8854897--8854955	21	2.8	21	86	0	82	30	20	23	25	1.98
8854916--8855049	60	2.2	60	81	6	164	32	23	18	25	1.97
8855321--8855359	12	3.6	12	74	25	50	30	48	5	15	1.66
8855321--8855369	20	2.5	20	96	0	89	30	46	4	18	1.67
8858848--8858931	33	2.5	33	96	0	150	17	19	41	21	1.90
8858989--8859018	2	15.0	2	92	0	51	50	3	0	46	1.18
8861982--8862103	21	5.8	21	68	12	88	41	3	4	50	1.40
8862062--8862096	15	2.3	15	90	5	52	42	2	2	51	1.31
8861985--8862098	42	2.7	43	86	1	149	40	3	5	50	1.42
8862700--8862744	2	22.5	2	100	0	90	51	0	0	48	1.00
8863391--8863415	3	8.3	3	100	0	50	0	32	0	68	0.90
8864156--8864281	42	3.0	42	86	0	180	20	19	35	23	1.96
8864325--8864352	2	14.0	2	100	0	56	50	0	0	50	1.00
8864402--8864521	42	2.9	42	88	0	177	23	35	20	20	1.96
8865262--8865286	3	8.3	3	100	0	50	68	0	32	0	0.90
8866750--8866774	2	12.5	2	100	0	50	48	0	0	52	1.00
8868739--8868790	17	3.2	17	76	15	65	42	0	0	57	0.98
8868739--8868790	15	3.2	16	75	8	61	42	0	0	57	0.98
8879921--8879973	22	2.4	22	81	12	63	49	11	5	33	1.62
8897363--8897414	16	3.5	16	75	20	58	23	1	15	59	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8897366--8897417	28	2.0	25	95	0	68	19	1	17	61	1.44
8901869--8902029	66	2.4	66	85	6	200	23	15	25	35	1.94
8905265--8905416	67	2.3	67	87	0	205	25	13	27	33	1.94
8905266--8905389	32	3.8	32	75	10	124	25	15	26	33	1.95
8908576--8908613	20	1.9	20	88	0	58	73	2	23	0	0.95
8910376--8910426	22	2.3	22	82	0	66	33	9	19	37	1.85
8918189--8918266	28	2.8	28	86	5	106	33	16	17	32	1.93
8926525--8926580	29	1.9	29	85	0	76	19	33	21	25	1.97
8932458--8932497	18	2.2	18	86	0	53	10	2	57	30	1.45
8936762--8936800	2	19.5	2	100	0	78	51	0	0	48	1.00
8937876--8937953	32	2.4	32	93	0	138	43	17	24	14	1.86
8943172--8943283	59	1.9	58	82	8	138	35	2	1	59	1.22
8943265--8943387	47	2.6	48	81	13	132	29	3	0	67	1.06
8947193--8947232	21	2.0	20	85	9	55	30	27	0	42	1.56
8950435--8950459	13	1.9	13	100	0	50	48	8	0	44	1.32
8951693--8951730	20	1.9	20	88	0	58	42	18	10	28	1.83
8959071--8959221	67	2.2	68	84	3	198	33	19	11	36	1.87
8960915--8960949	19	1.9	18	88	11	54	42	8	17	31	1.79
8964333--8964449	49	2.4	48	82	10	148	34	20	14	30	1.93
8969705--8969799	2	47.5	2	97	0	181	50	0	0	48	1.00
8973772--8973816	19	2.4	19	81	7	56	6	28	0	64	1.19
8974645--8974806	55	2.9	55	92	0	270	20	16	37	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8974652--8974738	28	3.1	28	62	21	65	20	16	37	25	1.93
8977362--8977413	25	2.1	25	85	3	70	25	32	15	26	1.95
8977362--8977420	24	2.4	25	82	2	75	25	28	15	30	1.96
8979497--8979536	20	2.0	20	90	0	62	22	2	0	75	0.93
8980323--8980362	19	2.2	19	86	4	55	45	2	2	50	1.28
8988128--8988381	55	4.6	55	92	0	409	27	35	14	22	1.93
9008092--9008141	25	2.0	26	96	4	93	42	0	0	58	0.98
9008094--9008148	25	2.2	26	90	3	85	45	0	0	54	0.99
9010474--9010520	14	3.1	15	82	14	53	0	40	2	57	1.11
9014327--9014362	13	2.6	14	82	8	56	50	0	36	13	1.43
9016079--9016135	20	2.9	19	76	7	60	28	21	15	35	1.94
9021277--9021316	18	2.2	18	86	0	53	30	17	20	32	1.95
9022037--9022076	20	2.0	21	85	5	55	32	0	0	67	0.91
9022714--9022840	54	2.4	52	78	2	146	56	17	3	22	1.55
9026217--9026262	13	3.3	14	84	9	58	58	0	2	39	1.10
9027041--9027136	49	2.0	49	97	2	176	14	32	12	39	1.84
9044637--9044810	29	6.0	28	76	11	136	39	9	12	37	1.76
9053775--9053875	32	3.1	32	71	13	105	40	23	11	23	1.88
9053768--9053870	35	3.0	35	71	13	115	35	25	11	27	1.90
9055915--9056110	99	2.0	99	98	0	383	33	12	20	32	1.91
9058562--9058592	15	2.1	15	100	0	62	22	32	25	19	1.97
9069162--9069191	2	15.5	2	93	6	53	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9074567--9074683	31	3.7	31	89	6	184	31	15	19	33	1.93
9074563--9074683	63	1.9	62	91	8	201	30	15	20	33	1.94
9074978--9075126	35	4.5	32	73	12	111	36	26	12	24	1.90
9074951--9075126	67	2.6	66	88	5	255	35	25	12	26	1.91
9075026--9075129	32	3.1	34	77	8	115	36	25	14	23	1.93
9075995--9076029	17	2.1	17	88	0	52	8	34	22	34	1.85
9077063--9077119	27	2.1	28	86	3	80	38	22	15	22	1.92
9077372--9077412	21	1.9	21	85	5	55	53	7	21	17	1.67
9077371--9077419	21	2.3	21	78	3	53	59	6	18	16	1.57
9085522--9085584	20	3.2	19	88	2	90	28	41	4	25	1.75
9085583--9085701	43	2.8	43	89	2	168	19	37	21	21	1.94
9089250--9089287	11	3.4	11	80	20	51	28	23	13	34	1.92
9089301--9089467	67	2.5	67	81	5	187	36	22	11	29	1.90
9089324--9089434	32	3.4	32	68	18	75	36	24	10	27	1.89
9094522--9094687	86	1.9	86	86	2	235	22	19	36	21	1.95
9094522--9094687	43	3.9	43	84	1	199	22	19	36	21	1.95
9094673--9094715	20	2.2	20	95	0	77	25	2	39	32	1.69
9097060--9097246	86	2.2	86	86	7	265	21	20	29	28	1.98
9096907--9097190	117	2.4	117	85	3	394	21	19	30	28	1.98
9097060--9097277	86	2.5	84	83	8	237	22	20	28	29	1.98
9096943--9097319	203	1.9	203	82	4	483	21	20	28	28	1.98
9100936--9101025	31	2.9	31	77	0	90	40	18	13	27	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9101028--9101089	24	2.6	24	92	0	97	29	37	17	16	1.92
9101122--9101395	55	5.0	55	82	4	302	43	31	11	13	1.80
9101786--9101846	23	2.7	23	84	0	77	24	29	19	26	1.99
9101832--9101894	23	2.7	24	73	11	58	22	39	15	22	1.92
9102006--9102054	23	2.1	23	88	0	71	28	32	10	28	1.90
9102085--9102148	23	2.8	24	75	17	64	28	29	7	34	1.85
9113090--9113207	27	4.3	27	74	7	78	30	12	19	37	1.89
9115651--9115675	13	1.9	13	100	0	50	52	0	0	48	1.00
9118411--9118452	19	2.3	19	87	4	68	30	0	26	42	1.55
9124129--9124174	20	2.3	20	92	0	74	30	4	19	45	1.70
9132171--9132216	20	2.3	20	88	7	67	32	4	17	45	1.68
9132261--9132313	28	1.9	27	88	3	79	30	18	22	28	1.98
9132261--9132319	28	2.1	28	84	6	75	30	20	23	25	1.98
9135800--9135844	21	2.3	19	88	11	65	26	8	20	44	1.80
9137487--9137529	20	2.2	20	86	0	59	72	6	13	6	1.27
9148406--9148434	10	2.9	10	100	0	58	51	0	48	0	1.00
9154496--9154587	34	2.8	32	80	11	80	30	8	28	32	1.87
9154507--9154593	34	2.5	35	85	5	115	26	11	27	34	1.91
9163719--9163892	56	3.1	56	88	0	258	33	10	28	27	1.90
9168103--9168202	41	2.4	41	89	0	146	53	4	0	43	1.19
9168172--9168446	49	5.6	49	68	19	139	52	3	1	42	1.28
9167973--9168345	183	2.0	191	85	6	514	51	4	1	42	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9168276--9168375	42	2.4	41	86	6	130	52	2	3	43	1.28
9168135--9168493	143	2.5	141	85	4	477	52	3	1	42	1.28
9168307--9168446	26	5.6	23	70	20	86	52	2	1	42	1.24
9168429--9168528	41	2.4	41	88	0	155	53	2	3	42	1.28
9168489--9168564	25	2.9	27	78	18	88	52	2	2	42	1.29
9168518--9168698	23	7.7	22	67	23	77	50	2	3	43	1.33
9168276--9168675	183	2.2	184	86	4	583	52	2	2	42	1.30
9167976--9168726	326	2.3	326	91	2	1180	51	3	1	42	1.31
9168461--9168729	143	1.9	141	84	4	362	52	3	2	40	1.33
9168274--9169046	160	4.8	156	73	15	610	52	3	2	41	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59