genome.fa.s10.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  20  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7310485--7310521	18	2.1	18	89	0	56	37	16	16	29	1.90
7312357--7312498	60	2.5	55	86	7	178	24	33	18	23	1.96
7312995--7313037	22	1.9	23	85	4	61	2	23	0	74	0.93
7313067--7313182	58	2.0	60	84	6	157	1	39	5	53	1.33
7313209--7313251	17	2.4	19	88	7	63	2	32	0	65	1.06
7313204--7313265	20	3.0	21	77	15	65	1	35	0	62	1.05
7313233--7313263	11	2.8	11	95	0	53	0	29	0	70	0.87
7313084--7313470	190	2.0	194	91	3	629	1	36	5	56	1.33
7313334--7313437	55	1.9	55	80	7	122	0	31	6	60	1.29
7313404--7313464	17	3.3	19	75	15	56	1	34	0	63	1.04
7313428--7313462	11	3.1	11	87	4	52	0	31	0	68	0.90
7313489--7313521	13	2.6	13	90	4	50	0	21	0	78	0.75
7314063--7314135	20	3.7	20	82	10	96	36	12	36	13	1.83
7323892--7323933	20	2.1	20	95	0	75	14	28	9	47	1.75
7324694--7324797	2	51.0	2	82	3	118	46	2	0	46	1.24
7325486--7325526	19	2.2	19	90	0	64	29	26	24	19	1.98
7343218--7343270	28	1.9	27	88	3	79	28	22	18	30	1.98
7343315--7343360	20	2.3	20	88	7	67	45	17	4	32	1.68
7347436--7347546	43	2.6	43	87	5	154	26	20	34	18	1.96
7347842--7347934	39	2.3	40	83	1	116	26	18	21	33	1.96
7350090--7350387	60	5.0	60	87	2	422	24	32	18	24	1.97
7351141--7351189	8	6.2	8	76	4	55	18	0	2	79	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7351143--7351180	12	3.2	12	88	7	60	21	0	0	78	0.74
7351143--7351187	23	2.0	23	86	8	65	20	0	2	77	0.87
7351549--7351591	19	2.3	18	84	4	59	44	2	0	53	1.13
7356243--7356284	19	2.2	19	86	0	57	35	4	9	50	1.56
7364464--7364519	21	2.7	21	77	2	60	41	21	7	30	1.80
7366092--7366140	15	3.2	15	80	13	55	28	0	10	61	1.29
7367184--7367326	75	1.9	74	95	2	252	25	4	20	48	1.69
7368342--7368477	59	2.3	58	81	5	157	44	8	10	37	1.68
7368342--7368456	28	4.0	27	75	8	95	44	8	9	37	1.68
7369787--7369821	16	2.2	16	89	0	52	77	5	0	17	0.96
7370033--7370070	13	2.7	14	88	8	51	71	0	0	28	0.87
7370324--7370415	45	2.0	45	100	0	184	47	19	13	19	1.81
7379869--7379917	2	25.0	2	84	12	66	46	4	0	48	1.20
7381221--7381277	2	31.0	2	78	16	61	54	0	1	43	1.10
7381227--7381277	15	3.7	15	87	10	65	56	0	0	43	0.99
7381474--7381530	30	1.9	30	85	3	80	45	8	14	31	1.75
7384807--7384832	2	13.0	2	100	0	52	50	0	0	50	1.00
7389089--7389131	19	2.3	18	88	11	61	41	4	0	53	1.21
7393852--7393897	19	2.4	20	82	10	60	56	0	0	43	0.99
7411033--7411096	32	2.0	32	93	0	110	40	12	14	32	1.83
7418347--7418428	43	1.9	43	84	0	110	41	18	14	25	1.88
7419717--7420058	169	2.0	168	90	2	535	32	13	21	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7420780--7420858	40	2.0	40	87	0	113	34	24	21	20	1.97
7429043--7429128	42	2.0	42	95	0	154	37	22	4	36	1.75
7433858--7433938	42	1.9	42	89	0	126	32	28	11	28	1.91
7436731--7436776	20	2.3	20	96	0	83	45	21	4	28	1.71
7437699--7437786	29	3.1	28	80	4	95	42	9	13	35	1.76
7437709--7437872	29	5.6	27	75	11	130	40	7	12	38	1.73
7439111--7439198	35	2.5	35	83	7	124	39	5	7	46	1.57
7439111--7439208	34	2.8	34	83	4	133	35	6	9	48	1.60
7439111--7439219	34	3.1	35	74	9	105	37	6	8	47	1.59
7441679--7441717	17	2.2	17	86	4	51	43	15	25	15	1.86
7443680--7443719	20	2.0	20	85	9	55	30	0	7	62	1.23
7445575--7445624	7	7.0	7	81	4	64	6	42	10	42	1.63
7445575--7445641	36	1.9	34	87	6	98	8	40	7	43	1.64
7445575--7445633	22	2.7	21	89	5	91	6	42	8	42	1.61
7445577--7445634	7	8.0	7	78	14	55	8	43	6	41	1.62
7455027--7455064	2	19.0	2	100	0	76	50	0	0	50	1.00
7455182--7455287	40	2.7	38	85	5	133	20	14	39	25	1.90
7462844--7462905	28	2.2	28	85	5	81	38	22	17	20	1.93
7465405--7465456	22	2.4	22	93	0	86	32	13	19	34	1.90
7469035--7469187	81	1.9	81	80	0	180	24	24	18	32	1.97
7470402--7470439	20	1.9	20	84	10	51	44	2	42	10	1.52
7488226--7488258	2	16.5	2	93	0	57	48	0	3	48	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7498550--7498603	28	2.0	27	85	3	72	25	20	20	33	1.97
7503060--7503094	16	2.3	15	90	5	52	71	14	2	11	1.25
7508793--7508834	21	2.0	21	90	0	66	16	21	21	40	1.91
7513553--7513714	55	2.9	55	87	3	227	13	14	30	41	1.85
7513750--7513826	31	2.5	31	89	4	111	28	18	20	32	1.96
7517803--7518165	31	11.7	31	73	8	173	36	22	15	25	1.93
7517857--7518164	93	3.3	91	87	5	388	35	22	15	25	1.94
7517803--7518166	62	5.9	62	80	3	324	36	22	15	25	1.93
7517921--7518166	93	2.6	93	93	0	420	34	21	16	26	1.95
7518366--7518469	31	3.4	31	78	5	129	27	14	34	23	1.93
7520221--7520452	31	7.6	31	75	6	188	36	22	17	23	1.95
7522587--7522928	31	11.2	31	83	3	361	39	21	16	22	1.92
7523519--7523884	47	7.9	47	75	3	265	21	31	18	27	1.97
7523518--7523884	94	3.9	94	77	4	321	22	31	18	27	1.97
7523625--7523884	141	1.8	140	82	3	333	21	31	19	27	1.97
7525111--7525225	34	3.4	34	87	4	151	29	32	13	25	1.93
7525081--7525228	34	4.3	34	83	6	149	31	32	12	23	1.92
7525231--7525317	35	2.5	35	86	1	120	37	29	11	20	1.88
7526331--7526440	42	2.6	42	84	2	150	25	35	16	22	1.95
7529353--7529464	43	2.6	43	89	0	170	23	18	36	21	1.95
7532071--7532107	12	3.3	12	78	21	53	35	13	16	35	1.88
7532335--7532365	16	1.9	16	93	0	53	67	16	3	12	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7533593--7533706	38	3.0	38	88	2	158	29	31	10	28	1.90
7541361--7541498	38	3.6	38	91	3	206	29	31	12	26	1.92
7550151--7550250	38	2.6	38	81	9	114	21	40	16	23	1.91
7552882--7552948	29	2.4	28	82	2	80	31	20	13	34	1.92
7563045--7563171	2	65.5	2	81	14	151	45	0	2	50	1.20
7564280--7564313	13	2.6	13	100	0	68	8	52	0	38	1.33
7566553--7566689	43	3.2	43	89	0	193	27	15	32	24	1.95
7566954--7567002	22	2.2	22	92	0	80	38	22	10	28	1.87
7566968--7567014	22	2.1	22	88	0	67	46	21	12	19	1.82
7573990--7574115	43	2.9	43	85	0	162	24	19	34	22	1.96
7576386--7576413	5	5.6	5	100	0	56	0	17	0	82	0.68
7583266--7583310	14	3.1	15	81	12	58	2	17	2	77	0.97
7584118--7584321	52	3.9	52	88	0	282	24	13	29	31	1.94
7593038--7593082	15	3.0	15	86	0	63	31	28	8	31	1.88
7593121--7593200	34	2.3	36	80	8	110	30	10	32	27	1.89
7596865--7596925	10	6.4	9	71	17	52	34	0	1	63	1.04
7596866--7596923	18	3.0	20	82	12	68	32	0	1	65	1.03
7599883--7599972	35	2.6	35	78	3	101	48	17	14	18	1.81
7600093--7600178	35	2.5	35	82	0	100	46	18	13	20	1.83
7600432--7600517	35	2.5	35	92	0	136	45	19	16	18	1.86
7599915--7600586	339	2.0	339	90	1	1053	41	16	16	25	1.88
7600777--7600888	29	3.9	29	84	2	136	14	25	11	48	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7602870--7602905	13	2.7	13	86	4	54	75	0	0	25	0.81
7603320--7603360	20	2.1	19	86	4	55	73	14	2	9	1.19
7604243--7604292	15	3.2	15	78	16	57	74	0	0	26	0.83
7606215--7606359	35	4.1	35	87	0	200	28	11	35	24	1.89
7613270--7614210	477	2.0	477	96	0	1747	34	21	15	28	1.94
7616318--7616398	35	2.3	35	84	0	108	46	22	14	16	1.83
7616638--7616774	29	4.7	29	73	10	100	18	24	8	48	1.75
7616646--7616760	58	2.0	58	81	3	133	19	25	7	47	1.75
7622345--7622495	76	2.0	75	97	0	275	27	5	24	41	1.78
7636819--7636858	21	2.0	21	90	5	64	42	7	0	50	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59