genome.fa.s10.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  9  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3312111--3312165	28	1.9	29	88	3	85	36	1	3	58	1.26
3312157--3312229	22	3.5	22	70	12	64	42	1	4	52	1.29
3320535--3320576	19	2.2	20	86	4	59	50	0	2	47	1.14
3326060--3326115	29	1.9	29	81	0	67	62	3	3	30	1.29
3341317--3341356	19	2.0	21	85	9	57	45	20	10	25	1.81
3341469--3341495	2	13.5	2	100	0	54	51	0	0	48	1.00
3341404--3341483	37	2.1	39	86	11	121	51	7	3	36	1.48
3341410--3341493	38	2.2	38	81	10	100	51	5	3	38	1.44
3341561--3341694	37	3.4	37	70	20	110	26	39	11	21	1.88
3341546--3341769	81	2.7	82	86	4	319	25	37	14	23	1.92
3346679--3346734	29	1.9	29	85	7	78	30	8	5	55	1.53
3349380--3349407	2	14.0	2	100	0	56	0	50	0	50	1.00
3357342--3357394	15	3.5	15	92	0	79	49	16	28	5	1.69
3359299--3359338	20	2.0	20	90	0	62	52	0	2	45	1.14
3374130--3374200	28	2.5	27	77	8	79	49	4	22	23	1.67
3377654--3377761	53	2.1	52	85	5	146	32	3	12	51	1.56
3389902--3389981	38	2.2	36	88	8	117	55	7	17	20	1.66
3395673--3395706	11	3.0	11	83	8	50	58	5	0	35	1.22
3398301--3398337	2	19.5	2	89	10	60	54	0	0	45	1.00
3405755--3405812	29	2.0	29	93	0	98	36	5	12	46	1.63
3411687--3411721	18	1.9	18	88	11	54	31	2	0	65	1.07
3411878--3411929	2	26.0	2	100	0	104	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3420597--3420636	21	1.9	21	84	0	53	35	17	10	37	1.83
3425389--3425426	16	2.4	16	83	12	51	55	0	5	39	1.23
3432063--3432107	21	2.1	21	88	8	65	53	4	26	15	1.61
3442069--3442113	20	2.3	20	82	14	58	37	0	0	62	0.96
3444982--3445140	84	1.9	84	80	7	189	29	6	16	46	1.73
3464091--3464137	20	2.3	21	82	10	62	42	0	0	57	0.98
3469411--3469459	15	3.3	14	78	21	55	59	2	0	38	1.09
3472936--3472986	7	7.1	7	93	2	66	84	0	5	9	0.78
3472936--3472986	14	3.6	14	89	2	75	84	0	5	9	0.78
3487931--3487957	14	1.9	14	100	0	54	51	7	0	40	1.30
3489482--3489531	25	2.0	25	84	0	64	44	10	0	46	1.37
3492686--3492735	25	2.0	25	88	7	75	44	12	0	44	1.41
3502261--3502428	87	1.9	86	87	1	246	22	7	19	51	1.72
3505955--3506015	32	1.9	32	93	6	106	29	13	9	47	1.74
3506732--3506961	21	10.1	21	71	12	120	21	14	26	36	1.92
3506777--3507154	26	15.6	26	76	13	308	23	12	26	36	1.91
3506805--3506985	69	2.6	69	89	1	274	21	14	28	35	1.92
3506735--3507133	99	4.2	97	81	7	424	23	13	26	37	1.91
3507116--3507224	23	4.8	23	79	5	114	26	11	26	35	1.90
3507245--3507313	22	3.2	21	81	8	77	42	24	10	23	1.85
3507245--3507304	21	2.8	21	87	2	75	43	23	10	23	1.83
3508053--3508096	2	22.0	2	100	0	88	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3513051--3513100	23	2.4	21	76	23	52	34	4	2	60	1.27
3515140--3515198	16	3.6	16	77	18	68	13	10	0	76	1.02
3515140--3515228	34	2.6	34	91	7	137	12	8	3	75	1.16
3515152--3515206	17	3.3	16	75	9	65	14	12	0	72	1.12
3523019--3523056	19	2.0	19	94	0	67	28	0	28	42	1.56
3526397--3526435	18	2.2	18	90	0	60	20	7	23	48	1.75
3529595--3529629	18	2.1	16	89	10	52	54	11	0	34	1.37
3530647--3530712	30	2.2	30	100	0	132	33	12	21	33	1.90
3533394--3533442	19	2.5	19	81	12	55	48	4	2	44	1.33
3533368--3533468	44	2.3	44	88	6	143	47	4	2	44	1.40
3533369--3533446	23	3.5	22	75	20	81	48	3	2	44	1.34
3533438--3533500	23	2.9	21	82	13	74	42	6	1	49	1.37
3533446--3533498	22	2.3	23	87	9	74	43	7	1	47	1.42
3533651--3533684	2	17.5	2	93	6	61	47	0	0	52	1.00
3533651--3533711	23	2.7	22	82	10	70	47	1	0	50	1.10
3533888--3533928	12	3.0	15	80	20	54	41	0	4	53	1.22
3534215--3534244	1	30.0	1	100	0	60	0	0	0	100	0.00
3541102--3541148	4	12.0	4	95	4	87	25	0	23	51	1.49
3541129--3541356	126	1.8	126	87	1	341	24	7	22	46	1.77
3543768--3543794	2	13.5	2	100	0	54	0	48	0	51	1.00
3543794--3543818	2	12.5	2	100	0	50	48	0	0	52	1.00
3547686--3547726	2	20.5	2	100	0	82	0	48	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3548955--3548987	12	2.6	13	85	9	50	6	18	3	72	1.18
3553136--3553184	2	24.5	2	95	0	89	46	0	2	51	1.12
3557530--3557567	19	2.0	19	100	0	76	26	10	15	47	1.78
3558528--3558564	3	12.3	3	100	0	74	32	0	0	67	0.91
3558872--3558912	12	3.4	12	86	0	55	0	53	0	46	1.00
3560601--3560665	32	2.0	33	87	3	96	40	0	0	60	0.97
3560609--3560665	12	5.1	12	73	16	59	38	0	0	61	0.96
3560943--3561012	29	2.5	28	81	11	88	61	0	0	38	0.96
3566655--3567455	33	24.3	33	74	8	309	29	28	18	23	1.98
3569870--3569908	20	1.9	21	89	5	62	66	2	5	25	1.25
3569996--3570048	25	2.1	25	86	6	72	66	16	7	9	1.43
3572959--3572997	2	20.0	2	89	5	62	0	46	0	53	1.00
3588519--3588551	2	16.5	2	100	0	66	48	0	0	51	1.00
3605651--3605680	5	6.0	5	96	0	51	83	0	16	0	0.65
3605829--3605870	3	14.3	3	95	5	77	35	0	0	64	0.94
3608108--3608173	2	32.5	2	87	3	69	42	0	0	48	1.03
3608737--3608781	22	2.0	23	83	12	58	55	0	0	44	0.99
3611915--3611970	2	28.5	2	84	10	71	46	1	1	50	1.22
3611918--3611970	15	3.5	15	80	10	63	45	1	1	50	1.23
3611916--3611960	17	2.6	17	92	0	72	44	2	0	53	1.13
3611915--3611960	19	2.4	19	92	0	74	45	2	0	52	1.13
3613930--3613955	2	13.0	2	100	0	52	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3619742--3619786	2	22.5	2	95	0	81	51	0	2	46	1.13
3622991--3623032	15	2.8	15	96	0	75	28	21	19	30	1.97
3627199--3627226	2	14.0	2	100	0	56	50	0	0	50	1.00
3627253--3627281	2	14.5	2	100	0	58	48	0	0	51	1.00
3631706--3631813	53	2.0	53	100	0	216	30	17	14	37	1.90
3642199--3642233	14	2.5	14	90	0	52	25	5	2	65	1.28
3649049--3649106	6	9.7	6	82	0	53	1	55	3	39	1.27
3649049--3649107	12	4.9	12	80	0	64	1	54	5	38	1.33
3649043--3649107	18	3.6	18	80	2	67	1	52	6	40	1.36
3649049--3649106	24	2.4	24	94	0	98	1	55	3	39	1.27
3654149--3654196	25	1.9	25	87	8	71	68	2	0	29	1.01
3658227--3658257	7	4.3	7	95	4	53	32	0	0	67	0.91
3663117--3663156	1	40.0	1	89	0	62	2	95	0	0	0.20
3667759--3667835	29	2.6	29	74	11	77	48	3	11	36	1.58
3667872--3667921	21	2.4	20	80	9	55	52	2	0	46	1.12
3667948--3668006	31	1.9	30	86	3	82	35	11	5	47	1.62
3671475--3671528	20	2.6	22	74	14	60	70	0	0	29	0.88
3671723--3671791	28	2.4	28	78	9	68	40	1	2	55	1.24
3671724--3671778	27	2.0	28	82	3	67	38	1	3	56	1.28
3675476--3675555	39	2.1	39	95	0	142	26	21	20	32	1.97
3678506--3678571	33	2.0	33	88	5	98	31	24	4	39	1.75
3680905--3680931	2	13.5	2	100	0	54	0	48	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3680931--3680969	2	19.5	2	94	0	69	48	2	0	48	1.15
3692568--3692646	40	2.0	40	90	5	124	17	22	26	32	1.96
3717339--3717402	26	2.4	28	84	7	80	57	1	3	37	1.24
3724570--3724600	1	31.0	1	93	0	53	0	0	3	96	0.21
3736291--3736336	3	15.3	3	100	0	92	32	0	0	67	0.91
3737968--3738011	23	1.9	23	86	9	63	68	2	0	29	1.02
3738035--3738319	142	2.0	142	88	1	428	29	16	7	47	1.74
3738428--3738455	8	3.5	8	100	0	56	10	14	35	39	1.81
3738467--3738492	3	8.7	3	100	0	52	34	0	0	65	0.93
3753754--3753961	103	2.0	103	100	0	416	35	11	18	35	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59