genome.fa.s10.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  45  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16294561--16294618	28	2.1	28	84	9	75	24	22	22	31	1.99
16294672--16294709	20	1.9	20	100	0	76	44	21	5	28	1.73
16296316--16296434	58	2.1	57	88	1	175	34	7	18	39	1.79
16320355--16320405	22	2.3	23	89	3	77	72	3	7	15	1.23
16320445--16320526	41	2.0	41	88	4	121	42	1	39	17	1.57
16326078--16326154	29	2.6	30	78	13	79	36	9	3	50	1.52
16326075--16326154	30	2.7	29	75	11	72	37	8	5	48	1.56
16327956--16328451	244	2.0	246	93	3	845	32	21	18	27	1.97
16334758--16334836	26	3.0	26	80	7	97	35	15	21	27	1.93
16336396--16336439	18	2.4	19	92	7	81	31	13	0	54	1.39
16338202--16338350	35	4.5	32	73	13	122	36	26	12	23	1.91
16338219--16338330	35	3.3	34	76	12	131	32	25	15	27	1.95
16338214--16338345	67	2.0	67	89	5	205	35	25	14	25	1.93
16339647--16339832	55	3.4	53	80	7	187	13	12	30	43	1.81
16339902--16339983	31	2.6	31	84	3	94	28	17	21	32	1.96
16343457--16343640	31	6.0	31	82	4	221	39	19	19	22	1.93
16343465--16343635	93	1.8	92	87	5	254	38	19	18	22	1.93
16344732--16344792	14	4.1	15	81	8	63	47	6	13	32	1.68
16344742--16344778	15	2.4	16	90	4	58	45	8	13	32	1.73
16346279--16346574	31	9.5	31	77	3	301	39	19	19	21	1.93
16346308--16346563	93	2.8	93	87	1	354	40	19	19	20	1.92
16346281--16346574	93	3.2	92	83	5	333	39	19	19	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16346943--16347237	156	1.9	156	88	2	450	26	20	21	32	1.97
16348822--16349087	31	8.6	31	84	2	284	37	21	16	24	1.93
16349553--16349664	53	2.1	52	86	1	152	27	29	18	24	1.98
16349669--16350032	47	7.8	47	77	6	326	21	32	17	28	1.96
16349667--16350032	94	3.9	94	83	3	459	21	31	18	28	1.96
16349667--16350009	187	1.8	188	87	1	510	21	32	17	28	1.96
16350543--16350830	144	2.0	143	98	0	558	31	19	10	38	1.85
16351801--16351843	19	2.3	19	79	0	50	39	13	11	34	1.82
16357444--16357582	67	2.1	67	90	2	217	34	25	12	28	1.92
16357471--16357581	32	3.4	32	73	11	107	36	27	11	25	1.90
16361780--16361834	2	27.5	2	77	14	51	45	0	1	50	1.12
16362700--16362844	73	2.0	73	83	5	186	40	19	17	22	1.92
16373553--16373678	42	3.0	42	91	0	198	23	36	19	20	1.95
16377044--16377091	21	2.3	20	79	10	60	14	22	6	56	1.61
16377049--16377089	21	1.9	22	90	5	66	17	24	7	51	1.70
16400756--16400799	2	22.0	2	100	0	88	50	0	0	50	1.00
16402363--16402393	12	2.7	12	95	5	55	19	6	0	74	1.03
16402531--16402589	31	1.9	31	86	6	84	10	20	1	67	1.28
16408430--16408454	13	1.9	13	100	0	50	48	8	0	44	1.32
16411776--16411826	15	3.4	14	84	10	66	49	13	3	33	1.61
16415741--16415876	67	2.0	67	86	8	188	36	25	11	26	1.90
16415766--16415870	35	3.1	35	75	10	119	38	23	11	26	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16416263--16416446	73	2.5	73	80	0	199	22	20	15	40	1.90
16423281--16423401	35	3.5	35	74	10	117	33	24	11	30	1.91
16423288--16423423	67	2.0	67	88	5	204	37	25	11	26	1.89
16423812--16423977	73	2.3	73	90	0	251	25	19	14	40	1.89
16423812--16424007	73	2.7	73	86	0	221	24	20	15	39	1.91
16426725--16426864	74	1.9	74	90	0	226	38	7	8	45	1.62
16427854--16428210	185	2.0	178	84	5	464	46	15	9	28	1.77
16428960--16429011	20	2.6	20	79	11	61	59	11	1	26	1.42
16433314--16433369	20	2.8	20	76	10	60	60	14	0	25	1.34
16440558--16440625	8	7.8	9	72	16	54	73	0	1	25	0.92
16441732--16441760	3	10.0	3	92	7	51	68	0	0	31	0.89
16442188--16442233	21	2.3	19	85	7	56	76	4	0	19	0.96
16442187--16442235	19	2.4	18	81	18	53	75	4	0	20	0.96
16452232--16452652	185	2.3	180	87	3	565	32	10	19	36	1.87
16452232--16452648	120	3.4	122	88	2	588	32	11	19	36	1.87
16452232--16452652	62	6.9	62	85	4	518	32	10	19	36	1.87
16452872--16452896	12	2.1	12	100	0	50	76	0	0	24	0.80
16452847--16452905	22	2.7	21	77	17	66	76	0	0	23	0.79
16452845--16452905	28	2.2	26	81	16	70	77	0	0	22	0.78
16452847--16452903	17	3.2	18	76	18	66	75	0	0	24	0.80
16453158--16453217	13	4.4	13	76	19	52	73	11	5	10	1.24
16453938--16453977	21	1.9	21	84	0	53	67	2	0	30	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16454033--16454061	3	10.0	3	92	7	51	68	0	0	31	0.89
16456371--16456425	28	2.0	28	89	7	85	21	0	9	69	1.16
16456957--16457018	33	1.9	32	83	9	81	37	1	11	50	1.48
16464602--16464639	16	2.4	16	90	0	58	47	15	21	15	1.82
16474384--16474421	18	2.0	19	85	10	51	36	23	5	34	1.78
16495186--16495241	29	1.9	29	100	0	112	37	21	28	12	1.90
16496201--16496247	22	2.1	22	96	0	85	34	19	14	31	1.92
16506860--16506912	23	2.3	23	100	0	106	3	26	3	66	1.26
16514913--16514979	6	10.8	6	76	6	53	37	8	11	41	1.73
16514938--16515022	2	43.5	2	76	4	84	44	2	7	45	1.43
16514914--16515019	12	8.3	13	73	17	64	42	4	8	44	1.55
16514920--16515018	32	3.4	29	84	9	123	43	4	8	44	1.52
16514909--16515022	18	6.4	18	83	11	119	42	5	7	43	1.56
16517140--16517178	16	2.4	16	87	8	53	56	15	5	23	1.59
16521226--16521292	27	2.3	30	75	17	70	59	0	1	38	1.06
16522652--16522701	22	2.3	22	96	3	93	56	12	4	28	1.54
16530535--16530573	16	2.4	16	87	8	53	56	15	5	23	1.59
16532656--16532680	10	2.5	10	100	0	50	68	0	0	32	0.90
16539666--16539706	21	2.0	21	95	0	73	39	4	51	4	1.45
16542885--16542931	2	23.5	2	100	0	94	51	0	0	48	1.00
16544757--16544783	2	13.5	2	100	0	54	0	48	0	51	1.00
16554717--16554768	26	2.0	26	82	14	63	40	19	5	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16556739--16556776	18	2.2	18	86	9	53	10	13	0	76	1.02
16558016--16558052	19	1.9	19	100	0	74	27	0	29	43	1.55
16561026--16561744	357	2.0	358	96	0	1323	31	15	13	39	1.86
16574058--16574091	12	2.8	12	90	0	50	23	32	44	0	1.54
16575663--16575704	17	2.5	17	92	0	66	35	16	4	42	1.69
16586993--16587025	11	3.1	11	91	4	50	48	0	6	45	1.27
16590723--16590780	23	2.5	22	78	13	55	39	1	5	53	1.33
16590831--16590926	44	2.2	42	81	7	113	45	6	2	45	1.40
16590924--16590954	8	3.9	8	100	0	62	51	0	0	48	1.00
16591682--16591784	30	3.5	29	82	6	118	45	7	12	33	1.71
16593587--16593619	17	1.9	17	93	0	57	69	6	0	24	1.10
16594149--16594360	35	6.1	35	81	7	211	45	10	7	37	1.66
16602813--16602843	16	1.9	16	93	0	53	12	3	25	58	1.50
16604683--16604712	12	2.5	12	94	0	51	33	13	6	46	1.69
16607274--16607304	15	2.1	15	93	0	53	29	6	0	64	1.18
16609090--16609129	19	2.1	19	86	9	55	52	10	0	37	1.35
16614430--16614493	24	2.7	24	68	4	58	48	4	42	4	1.45
16614499--16614746	48	5.2	48	78	1	216	45	6	43	4	1.49
16614499--16614720	24	9.2	24	77	7	193	45	7	43	4	1.50
16614499--16614720	72	3.1	70	79	11	243	45	7	43	4	1.50
16615246--16615280	14	2.5	14	90	0	52	74	17	2	5	1.14
16619580--16619647	34	2.0	34	91	0	109	45	25	5	23	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16620603--16620628	2	13.0	2	100	0	52	50	0	0	50	1.00
16620628--16620659	2	16.0	2	100	0	64	50	0	50	0	1.00
16626538--16626562	2	12.5	2	100	0	50	0	0	48	52	1.00
16635089--16635136	17	2.8	17	83	0	69	39	31	4	25	1.74
16635293--16635337	20	2.1	22	84	8	58	51	6	0	42	1.28
16640758--16640793	2	17.5	2	88	5	54	47	5	0	47	1.25
16641200--16641257	25	2.3	25	90	0	89	25	15	31	27	1.96
16643397--16643556	76	2.2	73	85	8	216	41	6	10	40	1.66
16650382--16650421	2	20.0	2	100	0	80	50	0	0	50	1.00
16651185--16651243	26	2.3	26	96	0	109	40	8	15	35	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59