genome.fa.s10.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  26  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9589669--9589841	43	4.0	43	83	7	226	24	17	34	22	1.96
9595028--9595066	15	2.6	15	87	0	51	20	23	2	53	1.57
9595327--9595492	78	2.1	77	88	1	251	37	12	8	42	1.72
9602379--9602418	2	20.0	2	100	0	80	50	0	0	50	1.00
9603510--9603606	5	19.0	5	73	23	62	0	35	0	64	0.93
9603511--9603588	4	18.8	4	80	9	61	0	33	0	66	0.92
9603510--9603602	42	2.3	41	82	12	111	0	35	0	64	0.94
9603533--9603606	21	3.3	25	81	18	69	0	35	0	64	0.94
9603696--9603740	22	2.1	21	88	12	65	4	17	0	77	0.92
9605165--9605448	139	2.0	140	86	2	401	27	16	21	35	1.94
9605834--9605891	29	2.0	29	89	0	89	32	15	15	36	1.89
9607049--9607180	71	1.9	71	82	3	167	24	21	14	39	1.91
9616016--9616063	22	2.2	22	92	0	78	14	6	29	50	1.67
9616415--9616448	17	2.0	17	88	0	50	29	23	35	11	1.90
9621563--9621608	21	2.2	20	84	7	56	15	21	6	56	1.61
9621568--9621608	21	1.9	22	90	5	66	17	24	7	51	1.70
9622857--9622962	40	2.7	39	83	4	131	40	24	4	30	1.75
9623026--9623101	38	2.0	38	100	0	152	42	21	10	26	1.85
9628077--9628177	51	2.0	51	94	0	175	36	17	15	29	1.92
9637071--9637116	3	15.3	3	95	0	83	65	0	2	32	1.05
9643070--9644211	242	4.6	250	78	6	1082	48	6	10	35	1.63
9643066--9644210	496	2.3	495	81	6	1326	48	6	10	35	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9643554--9644216	254	2.6	253	79	6	680	48	6	9	35	1.63
9650278--9650404	43	3.0	43	89	0	200	43	18	18	19	1.89
9651972--9652078	51	2.1	50	89	5	162	29	6	20	42	1.77
9668752--9668811	28	2.1	30	84	6	79	33	8	16	41	1.78
9677071--9677106	12	3.0	12	88	12	56	2	22	0	75	0.94
9678370--9678507	39	3.6	37	86	8	172	23	10	37	28	1.88
9681968--9682115	73	2.0	73	79	5	156	43	14	18	22	1.87
9689164--9689203	21	1.9	21	85	10	55	20	17	5	57	1.58
9692247--9692284	19	2.0	19	100	0	76	26	0	31	42	1.56
9703625--9703743	58	2.1	57	90	1	184	36	14	10	38	1.80
9704997--9705402	178	2.3	178	80	7	439	33	13	16	36	1.88
9712571--9712689	35	3.4	35	87	4	177	25	34	7	32	1.84
9712571--9712712	35	4.1	34	82	5	158	25	33	7	33	1.84
9723177--9723317	71	2.0	69	97	2	264	36	9	11	40	1.75
9730536--9730644	35	3.1	35	89	5	166	27	31	7	33	1.84
9730536--9730668	70	1.9	70	81	3	160	26	33	7	32	1.84
9730557--9730654	35	2.8	34	89	3	142	27	32	7	32	1.84
9733903--9733994	38	2.4	38	87	1	130	28	34	6	30	1.82
9737068--9737110	20	2.2	20	82	0	50	46	13	18	20	1.83
9740066--9740091	12	2.2	12	100	0	52	0	15	0	84	0.62
9740187--9740226	21	1.9	21	90	10	64	72	0	27	0	0.85
9742646--9742725	34	2.3	35	85	8	110	31	28	12	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9743586--9743612	2	13.5	2	100	0	54	51	0	0	48	1.00
9746254--9746404	64	2.4	64	76	6	153	28	17	26	27	1.97
9752623--9752784	80	2.0	80	97	0	306	29	3	14	51	1.60
9754304--9754351	1	48.0	1	95	0	78	95	0	4	0	0.25
9762469--9762513	19	2.3	20	81	11	58	55	0	2	42	1.12
9763274--9763337	34	1.9	34	87	9	96	21	14	28	35	1.92
9763278--9763364	34	2.6	34	83	3	95	24	13	26	35	1.93
9770268--9770320	2	26.5	2	84	0	61	58	0	41	0	0.98
9770271--9770319	10	4.9	10	87	0	71	61	0	38	0	0.96
9772155--9772243	44	2.0	44	100	0	178	46	15	8	29	1.77
9775253--9775287	2	17.5	2	87	0	52	48	45	2	2	1.32
9783821--9783902	35	2.3	35	87	0	128	28	25	15	30	1.96
9790789--9790840	21	2.5	21	100	0	104	32	13	15	38	1.86
9796164--9796216	2	26.5	2	100	0	106	49	0	0	50	1.00
9799684--9799724	2	20.5	2	100	0	82	0	48	0	51	1.00
9803415--9803511	36	2.7	34	76	14	97	32	17	26	22	1.96
9803427--9803511	36	2.4	35	83	9	109	32	15	29	22	1.94
9805138--9805170	2	16.5	2	93	0	57	45	0	3	51	1.16
9815729--9815770	20	2.2	19	84	16	52	30	2	26	40	1.69
9824328--9824479	77	2.0	78	93	1	261	37	7	15	38	1.77
9824331--9824535	77	2.8	77	83	7	239	39	10	14	36	1.80
9825279--9825303	11	2.3	11	100	0	50	60	16	8	16	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9831640--9831672	16	2.1	16	94	5	59	6	21	6	66	1.35
9840556--9840586	9	3.4	9	95	0	53	25	0	0	74	0.82
9842037--9842234	98	2.0	98	92	0	324	44	10	24	20	1.82
9844497--9844522	1	26.0	1	100	0	52	0	100	0	0	0.00
9848268--9848335	30	2.3	30	89	0	100	44	1	1	52	1.19
9848850--9848887	19	2.1	19	85	5	51	28	10	5	55	1.56
9850477--9850501	13	1.9	13	100	0	50	48	8	0	44	1.32
9856140--9856195	22	2.6	22	88	2	78	35	8	19	35	1.83
9857236--9857468	68	3.4	68	81	0	259	36	9	19	34	1.84
9865354--9865417	21	3.0	21	77	8	76	23	37	26	12	1.90
9871883--9872024	29	4.9	28	84	6	176	39	10	12	37	1.78
9871883--9872038	59	2.7	59	85	5	201	39	9	11	39	1.74
9871883--9872033	28	5.2	28	83	10	162	40	9	11	37	1.76
9881522--9881580	26	2.3	26	79	5	66	66	3	28	1	1.18
9889009--9889067	26	2.3	26	79	5	66	66	3	27	3	1.24
9900817--9900903	38	2.4	38	82	5	99	28	33	10	27	1.90
9900989--9901041	2	26.5	2	90	0	79	49	1	1	47	1.23
9900988--9901047	14	4.3	14	89	0	75	50	5	1	43	1.34
9906843--9906931	45	2.0	46	80	14	105	66	4	4	24	1.29
9907736--9907767	16	2.0	16	93	0	55	12	0	21	65	1.25
9907816--9907862	16	2.9	17	78	15	55	40	4	12	42	1.63
9909282--9909340	21	2.8	21	73	0	64	16	18	25	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9909619--9909741	43	2.9	44	81	7	137	21	37	15	26	1.93
9911669--9911919	68	3.7	68	83	0	322	36	11	17	34	1.86
9911675--9911919	136	1.8	136	86	0	355	36	11	17	34	1.86
9916089--9916217	36	3.6	36	92	1	197	21	17	40	20	1.92
9916089--9916249	72	2.3	71	80	3	171	21	18	39	20	1.92
9919278--9919320	18	2.4	18	80	7	52	13	20	4	60	1.51
9920139--9920176	19	2.1	18	95	5	67	57	0	0	42	0.98
9921136--9921198	17	3.4	19	77	20	62	69	0	30	0	0.88
9921137--9921212	28	2.9	27	84	11	104	67	0	32	0	0.91
9921156--9921212	20	2.9	20	82	14	66	68	0	31	0	0.90
9921156--9921203	10	4.8	11	71	23	52	70	0	29	0	0.87
9921145--9921212	21	3.3	21	80	17	72	66	0	33	0	0.92
9922631--9922790	55	2.9	55	86	0	212	28	34	13	23	1.93
9925943--9926178	75	3.1	79	62	17	206	51	12	10	25	1.71
9925940--9926243	151	2.0	151	100	0	608	49	11	11	26	1.73
9928706--9928802	51	1.9	51	91	0	158	28	23	23	23	1.99
9928832--9928872	21	2.0	21	90	0	64	34	21	26	17	1.95
9930729--9930806	35	2.2	35	90	0	120	26	6	37	29	1.81
9930740--9930819	35	2.3	35	86	0	106	30	6	30	33	1.82
9932035--9932097	22	2.8	22	90	2	90	28	44	4	22	1.73
9932084--9932215	43	3.1	43	82	0	147	22	34	17	25	1.96
9940458--9940615	55	2.9	55	82	5	194	27	35	14	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9941535--9941572	14	2.6	15	83	4	51	73	0	21	5	1.02
9955254--9955308	25	2.2	25	86	0	74	30	12	29	27	1.93
9961418--9961459	21	2.0	21	85	0	57	16	23	21	38	1.93
9961812--9961914	38	2.7	38	84	3	125	20	40	17	21	1.91
9963547--9963663	42	2.8	42	89	0	171	23	35	19	21	1.96
9968155--9968331	88	2.0	89	97	1	338	32	11	20	35	1.89
9969135--9969253	43	2.8	43	82	7	134	26	23	31	18	1.97
9969152--9969266	43	2.7	43	83	5	135	26	21	34	17	1.95
9969299--9969361	2	31.5	2	96	0	117	47	0	1	50	1.10
9970444--9970506	30	2.1	30	100	0	126	41	3	22	33	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59