genome.fa.s10.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  54  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19539802--19539873	20	3.8	20	68	20	64	47	0	2	50	1.15
19545392--19545449	28	2.1	28	84	9	75	22	22	24	31	1.99
19545495--19545540	20	2.3	20	96	0	83	45	21	4	28	1.71
19545904--19545943	15	2.4	18	80	12	50	45	0	5	50	1.23
19547142--19547385	67	3.7	67	82	7	257	22	11	14	51	1.74
19547142--19547393	22	11.5	22	81	5	260	22	11	13	51	1.73
19547571--19548075	257	2.0	256	96	0	922	33	14	15	37	1.87
19550221--19550321	34	3.0	32	70	21	80	29	35	9	24	1.88
19552647--19552671	13	1.9	13	100	0	50	44	0	8	48	1.32
19554062--19554106	15	2.9	16	87	6	67	26	4	17	51	1.65
19554149--19554188	5	8.0	5	91	0	62	40	0	20	40	1.52
19557903--19557948	19	2.4	20	82	10	60	54	0	2	43	1.12
19559762--19559786	13	1.9	13	100	0	50	44	0	8	48	1.32
19566136--19566183	25	1.9	25	100	0	96	56	12	12	18	1.67
19566979--19567014	17	2.1	17	94	0	63	36	5	0	58	1.22
19569824--19570058	68	3.4	68	72	10	231	34	11	28	25	1.91
19569896--19570008	39	3.0	39	92	7	191	30	5	31	31	1.80
19573709--19573757	24	2.1	23	81	11	55	51	2	12	34	1.51
19587400--19587439	19	2.2	19	95	4	73	42	5	0	52	1.23
19588956--19588994	18	2.1	19	90	4	62	12	23	12	51	1.74
19588960--19589016	6	9.5	6	83	7	53	15	22	15	45	1.84
19588982--19589017	6	6.0	6	96	0	54	16	27	16	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19592486--19592527	22	2.0	21	85	4	57	64	11	0	23	1.27
19592468--19592534	27	2.4	28	79	16	77	65	10	4	19	1.40
19594213--19594274	30	2.1	29	82	5	72	0	30	0	69	0.89
19594436--19594498	29	2.2	29	91	0	99	3	34	9	52	1.50
19594551--19594610	14	4.4	14	72	14	54	0	30	1	68	0.99
19594511--19594685	77	2.3	77	80	5	183	2	38	6	52	1.39
19594740--19594770	2	15.5	2	93	0	53	45	0	0	54	0.99
19595139--19595197	7	8.4	7	75	14	50	16	1	3	77	0.98
19595517--19595778	122	2.1	122	87	0	389	33	13	21	31	1.92
19595731--19595797	21	3.1	21	71	2	62	26	11	23	37	1.90
19595864--19595923	21	2.9	20	78	7	57	35	13	21	30	1.92
19595599--19595919	143	2.2	143	83	3	430	32	14	22	30	1.93
19595967--19596026	22	2.8	22	80	10	70	28	11	31	28	1.92
19597219--19597256	19	2.0	19	94	0	67	26	0	28	44	1.54
19604421--19604469	25	2.0	25	95	0	89	34	14	16	34	1.89
19606181--19606237	28	2.0	28	100	0	114	36	14	10	38	1.80
19608673--19608775	38	2.6	40	84	3	138	24	40	15	19	1.90
19615729--19615767	4	9.2	4	83	10	51	48	20	0	30	1.50
19628536--19628575	20	2.0	20	100	0	80	30	15	25	30	1.95
19641033--19641100	30	2.3	30	84	0	91	42	4	16	36	1.68
19641541--19641586	12	3.4	14	73	14	51	26	0	2	71	0.97
19641539--19641591	26	2.0	28	92	7	92	26	0	3	69	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19642621--19642647	3	9.0	3	100	0	54	33	0	0	66	0.92
19642836--19642869	15	2.4	14	90	5	50	52	0	0	47	1.00
19648672--19648696	12	2.1	12	100	0	50	40	24	8	28	1.83
19650542--19650745	103	2.0	103	91	0	327	25	20	13	40	1.89
19654438--19654612	79	2.2	78	81	4	190	42	8	7	41	1.62
19655264--19655324	32	1.9	32	100	0	122	24	37	3	34	1.72
19659023--19659065	19	2.2	20	91	4	70	27	25	27	18	1.98
19659062--19659140	40	2.0	40	97	0	149	37	25	18	17	1.93
19659496--19659563	3	22.7	3	84	11	86	69	2	0	27	1.03
19659512--19659575	6	9.9	7	83	16	61	68	1	0	29	0.99
19660376--19660424	26	1.9	25	84	12	64	36	2	28	32	1.69
19663366--19663443	40	2.0	40	94	0	138	34	24	23	17	1.96
19666029--19666108	40	2.0	41	87	2	117	36	26	20	17	1.94
19667698--19667918	112	2.0	112	98	0	424	25	13	19	40	1.89
19669723--19669763	14	2.8	15	75	20	50	36	0	2	60	1.10
19669697--19669798	45	2.2	48	83	10	124	35	1	1	60	1.19
19694368--19694409	21	1.9	23	85	9	61	16	40	7	35	1.76
19738640--19738679	20	2.0	20	85	0	53	42	0	0	57	0.98
19746190--19746232	2	21.5	2	95	0	77	48	0	2	48	1.14
19751964--19752378	116	3.6	116	87	1	568	32	6	20	40	1.77
19753089--19753122	16	2.1	16	88	0	50	79	5	11	2	1.02
19753803--19753867	31	2.1	32	85	2	87	23	29	23	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19764802--19764827	3	8.7	3	100	0	52	34	34	0	30	1.58
19771178--19771215	3	12.7	3	100	0	76	31	0	0	68	0.90
19774625--19774655	2	16.0	2	93	6	55	51	0	48	0	1.00
19776492--19776529	14	2.8	14	88	4	51	23	10	5	60	1.50
19779179--19779250	25	3.0	24	86	6	92	58	0	0	41	0.98
19783804--19783860	27	2.2	24	75	16	60	38	1	8	50	1.44
19783970--19784055	7	12.6	7	73	23	53	38	1	1	59	1.13
19783978--19784048	19	3.5	19	72	20	72	36	1	1	60	1.14
19783971--19784057	42	2.1	41	89	6	131	37	1	1	59	1.12
19790099--19790166	2	34.0	2	100	0	136	50	0	50	0	1.00
19791605--19791631	2	13.5	2	100	0	54	51	0	0	48	1.00
19793198--19793230	14	2.3	15	89	5	50	81	0	12	6	0.85
19794514--19794564	2	25.5	2	100	0	102	49	0	0	50	1.00
19795134--19795163	15	1.9	16	93	6	53	63	3	0	33	1.11
19800953--19801032	22	3.6	21	75	9	61	75	0	3	21	0.96
19800950--19801021	4	17.0	4	74	23	51	72	0	2	25	0.98
19801614--19801685	27	2.7	27	88	0	108	27	11	51	9	1.69
19814497--19814786	62	4.9	62	75	10	262	32	10	19	37	1.85
19814583--19814884	113	2.7	113	89	0	451	31	10	19	38	1.86
19814995--19815065	5	14.8	5	78	17	53	77	0	4	18	0.93
19815007--19815052	21	2.2	20	88	7	65	73	0	2	23	0.94
19815007--19815053	16	2.9	16	79	14	53	74	0	2	23	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19814994--19815062	11	6.5	10	75	20	52	76	0	4	18	0.94
19814995--19815054	22	2.7	22	82	10	77	75	0	3	21	0.95
19819630--19819659	2	15.0	2	92	0	51	50	3	0	46	1.18
19828526--19828558	2	17.0	2	93	6	59	48	0	51	0	1.00
19840495--19840538	18	2.5	17	82	7	61	15	4	0	79	0.89
19840528--19840552	12	2.1	12	100	0	50	24	0	0	76	0.80
19840520--19840567	22	2.2	22	79	13	55	22	0	0	77	0.78
19840527--19840566	17	2.4	17	91	4	64	22	0	0	77	0.77
19843062--19843094	2	17.0	2	93	6	59	48	0	51	0	1.00
19847039--19847100	18	3.2	18	79	9	61	74	0	3	22	0.96
19857774--19857805	15	2.1	15	100	0	64	37	31	6	25	1.81
19861201--19861396	98	2.0	98	100	0	392	32	32	13	21	1.92
19866690--19866759	26	2.9	24	76	19	74	51	0	0	48	1.00
19866842--19866881	15	2.4	17	84	16	57	57	0	2	40	1.12
19867989--19868041	27	1.9	27	84	3	70	58	5	9	26	1.52
19877258--19877296	21	2.0	21	85	10	55	61	12	12	12	1.57
19887067--19887106	20	2.0	20	85	5	53	20	2	5	72	1.15
19889233--19889279	22	2.2	22	85	7	62	2	19	0	78	0.85
19889233--19889358	21	5.8	21	69	18	80	5	20	0	73	1.02
19889320--19889368	21	2.4	20	82	3	62	0	24	2	73	0.94
19889227--19889390	89	1.9	88	84	12	223	6	21	0	71	1.11
19889979--19890045	29	2.2	29	84	5	80	5	14	2	76	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19890813--19890868	23	2.4	23	81	3	67	42	8	10	37	1.71
19894774--19894800	14	1.9	14	100	0	54	70	7	14	7	1.32
19901679--19901706	2	14.0	2	100	0	56	50	0	0	50	1.00
19904448--19904481	14	2.4	14	90	9	52	73	0	26	0	0.83
19911340--19911382	20	2.2	20	84	12	54	67	6	23	2	1.27
19913958--19914031	38	1.9	38	94	0	130	47	10	13	28	1.76
19914815--19914929	25	4.7	25	79	16	134	46	1	0	52	1.11
19914835--19914882	22	2.2	22	85	7	62	43	4	0	52	1.20
19914818--19914907	47	1.9	47	90	4	146	44	2	0	53	1.13
19914857--19914972	58	2.0	57	83	11	148	44	0	0	54	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59