genome.fa.s10.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  42  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15042478--15042896	31	13.5	31	91	1	504	23	19	21	35	1.96
15045048--15045253	31	6.6	31	80	2	243	23	17	20	38	1.93
15045048--15045253	93	2.2	93	85	1	279	23	17	20	38	1.93
15046820--15046853	17	1.9	18	88	5	52	35	8	2	52	1.47
15046864--15046916	22	2.4	22	100	0	106	32	9	9	49	1.67
15046827--15046980	74	2.1	73	85	6	211	33	11	5	50	1.60
15046889--15046994	53	2.0	52	84	12	137	36	12	3	47	1.59
15046911--15046957	16	3.1	16	76	17	55	40	10	2	46	1.50
15047989--15048252	31	8.5	31	83	0	339	23	17	21	37	1.94
15049250--15049385	31	4.4	31	91	0	200	32	24	16	27	1.96
15053079--15053153	31	2.4	31	84	4	89	32	25	18	24	1.97
15053200--15053497	55	5.4	55	80	4	339	41	30	14	12	1.83
15061011--15061143	66	2.0	66	94	0	230	39	16	20	23	1.92
15061584--15061623	2	20.0	2	94	0	71	50	2	0	47	1.14
15072942--15072980	9	4.3	9	83	0	51	41	23	10	25	1.86
15072943--15072977	18	1.9	18	100	0	70	40	25	11	22	1.88
15073031--15073070	15	2.7	15	84	0	53	70	0	0	30	0.88
15073241--15073286	18	2.6	18	82	0	56	50	21	8	19	1.75
15078218--15078288	28	2.7	27	80	8	67	35	14	9	40	1.79
15078301--15078455	53	2.9	54	84	5	170	38	12	9	39	1.75
15078302--15078469	55	3.1	54	83	5	196	39	12	9	38	1.76
15078302--15078469	27	6.2	28	80	6	157	39	12	9	38	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15078377--15078482	27	4.0	27	80	11	94	37	14	11	36	1.82
15080746--15080813	29	2.3	29	84	5	82	29	8	19	42	1.81
15086283--15086370	33	2.5	36	81	9	101	71	0	4	23	1.04
15086290--15086345	4	13.8	4	80	10	51	71	0	1	26	0.96
15086521--15086558	18	2.0	19	85	10	51	7	0	86	5	0.69
15086742--15086801	16	3.6	16	79	18	68	31	0	3	65	1.09
15086743--15086807	19	3.6	18	84	10	80	30	1	4	63	1.24
15090574--15090699	42	3.0	42	85	1	153	20	33	19	26	1.97
15095310--15095439	33	3.8	34	79	4	127	36	14	17	30	1.90
15097391--15097447	28	2.0	29	83	10	73	29	24	15	29	1.96
15097924--15098018	43	2.2	44	83	9	115	25	16	12	45	1.83
15097947--15098035	44	2.0	43	80	6	99	24	19	12	43	1.85
15104479--15104593	35	3.3	35	90	0	167	33	9	31	25	1.88
15104479--15104616	70	2.0	69	81	1	159	31	11	31	25	1.91
15106982--15107113	43	3.1	43	83	2	167	22	18	37	21	1.94
15108113--15108206	47	2.0	46	89	6	145	18	19	24	37	1.93
15109010--15109061	26	2.0	26	85	7	70	17	3	9	69	1.31
15111020--15111088	20	3.4	20	74	4	75	33	13	18	34	1.90
15111670--15111948	80	3.5	80	91	1	416	35	22	8	33	1.84
15117046--15117073	3	9.3	3	100	0	56	35	0	0	64	0.94
15119855--15119915	27	2.2	28	88	2	88	47	1	6	44	1.39
15119854--15119901	2	23.0	2	80	16	53	45	2	4	47	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15125960--15126325	180	2.0	180	91	1	599	30	17	18	33	1.94
15154620--15154693	35	2.1	35	82	0	85	32	37	9	20	1.85
15155399--15155429	2	15.5	2	93	0	53	0	45	0	54	0.99
15162601--15162637	12	3.3	12	78	21	53	32	18	13	35	1.90
15166668--15166714	19	2.6	19	86	6	71	59	0	0	40	0.97
15167072--15167104	15	2.1	15	94	5	57	75	0	0	24	0.80
15167478--15167546	34	2.1	34	81	5	79	26	10	34	28	1.89
15168332--15168570	60	4.0	60	86	5	333	25	18	32	23	1.97
15168333--15168562	119	1.9	119	88	6	351	25	19	32	23	1.98
15176219--15176423	103	2.0	102	100	0	401	32	28	17	21	1.96
15182122--15182160	20	1.9	21	89	5	62	10	17	7	64	1.48
15191680--15191781	43	2.4	43	79	0	114	35	16	12	35	1.87
15197099--15197140	20	2.2	19	91	4	66	52	9	0	38	1.34
15201691--15201730	20	2.0	20	90	4	64	42	27	7	22	1.80
15205846--15205886	21	2.1	19	86	9	55	29	0	9	60	1.28
15221024--15221073	25	2.0	25	84	0	64	16	2	18	64	1.39
15221051--15221099	22	2.2	22	89	7	73	18	2	10	69	1.27
15226859--15227022	59	2.8	56	82	7	175	39	7	11	41	1.69
15226866--15227033	28	5.8	27	76	12	122	41	7	11	39	1.71
15226859--15227033	29	5.9	29	75	14	135	41	7	12	39	1.70
15227175--15227207	17	1.9	17	88	11	50	39	3	15	42	1.62
15228263--15228296	16	2.1	16	88	0	50	32	2	2	61	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15239299--15239334	2	18.0	2	100	0	72	50	0	0	50	1.00
15245126--15245196	34	2.1	35	83	2	90	29	11	25	33	1.91
15245337--15245384	22	2.2	22	96	0	87	33	10	45	10	1.72
15248769--15248806	15	2.6	15	91	4	60	0	31	0	68	0.90
15249033--15249071	2	19.5	2	100	0	78	48	0	0	51	1.00
15249684--15249855	77	2.3	77	87	4	242	18	13	41	26	1.87
15251329--15251355	13	2.1	13	100	0	54	70	0	14	14	1.17
15254776--15254963	68	2.8	67	79	7	200	40	11	17	30	1.84
15255171--15255243	32	2.3	32	95	0	128	26	19	28	26	1.98
15259342--15259446	42	2.5	42	84	0	138	24	20	31	23	1.98
15259342--15259458	42	2.8	42	82	0	117	24	18	32	23	1.97
15264480--15264538	31	2.0	31	83	6	77	47	6	8	37	1.61
15274055--15274081	7	3.9	7	100	0	54	44	0	25	29	1.54
15279781--15279821	20	2.0	20	95	0	73	41	0	14	43	1.45
15279790--15279839	25	2.0	25	84	7	66	44	0	20	36	1.52
15285331--15285389	23	2.6	23	84	10	68	69	1	5	23	1.18
15285864--15285916	21	2.6	21	87	3	63	22	16	22	37	1.94
15285870--15285916	21	2.2	21	92	0	76	23	17	23	36	1.95
15298492--15298728	120	2.0	117	98	1	447	59	9	7	23	1.54
15302538--15302586	25	2.0	25	84	8	64	16	24	14	44	1.84
15302618--15302678	5	12.4	5	91	5	81	3	18	0	78	0.88
15302987--15303066	34	2.4	34	82	4	99	45	31	5	18	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15302987--15303082	34	2.8	34	79	0	93	41	31	7	19	1.79
15307737--15307778	17	2.4	17	84	11	50	61	2	2	33	1.21
15316542--15316588	22	2.2	22	88	3	69	25	25	25	23	2.00
15323878--15323909	16	2.0	16	93	0	55	9	0	21	68	1.17
15325140--15325331	68	2.8	68	89	0	294	36	10	19	33	1.86
15327144--15329303	727	3.0	722	85	3	2765	32	19	15	32	1.93
15331295--15331345	2	25.5	2	87	0	75	50	5	0	43	1.26
15331295--15331345	16	3.1	16	89	10	84	50	5	0	43	1.26
15333530--15333584	25	2.2	25	100	0	110	41	23	7	27	1.80
15345983--15346044	26	2.4	26	94	0	106	32	40	3	24	1.71
15346280--15346360	42	1.9	42	94	0	144	22	34	22	20	1.97
15349418--15349681	102	2.6	102	81	1	314	41	12	20	25	1.87
15350405--15350508	29	3.6	29	73	11	97	45	9	24	21	1.81
15358881--15358994	37	3.1	37	90	0	192	19	39	13	28	1.89
15363127--15363344	49	4.4	49	85	0	301	23	15	36	24	1.93
15368840--15368949	49	2.2	49	98	0	211	26	14	35	23	1.93
15373473--15373506	17	1.9	17	88	5	50	38	20	26	14	1.91
15376999--15377040	21	2.1	20	86	8	59	59	9	0	30	1.29
15382350--15382404	28	2.0	28	82	7	67	32	18	12	36	1.88
15385264--15385297	18	1.9	17	88	5	50	17	11	0	70	1.16
15385307--15385337	16	1.9	16	93	0	53	70	0	0	29	0.87
15393269--15393299	3	10.3	3	100	0	62	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15402521--15402591	22	3.3	22	76	11	74	43	4	1	50	1.30
15402524--15402589	21	3.1	21	75	12	62	43	4	1	50	1.32
15405566--15405603	16	2.4	16	86	8	51	36	0	0	63	0.95
15405839--15405910	23	3.0	23	80	17	85	58	0	0	41	0.98
15406010--15406075	34	1.9	34	87	0	96	27	6	16	50	1.69
15411211--15411494	142	2.0	141	88	2	417	39	7	11	41	1.69
15411499--15411524	9	2.9	9	100	0	52	23	0	23	53	1.46
15413596--15413637	21	2.0	20	82	13	50	50	9	0	40	1.35
15414512--15414551	22	2.0	21	85	14	57	32	2	2	62	1.22
15424928--15424986	29	2.0	29	93	0	100	38	27	15	18	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59