genome.fa.s10.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  34  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12432195--12432304	43	2.6	43	82	2	132	21	36	17	24	1.94
12436794--12436860	21	3.2	21	80	2	73	34	14	14	35	1.88
12437492--12437523	3	11.3	3	87	12	50	71	0	0	28	0.86
12437491--12437523	11	3.0	11	100	0	66	72	0	0	27	0.85
12437492--12437523	8	3.8	9	84	16	50	71	0	0	28	0.86
12437618--12437657	19	2.2	19	90	4	64	52	2	5	40	1.37
12438111--12438156	20	2.3	21	88	11	78	0	26	0	73	0.83
12438253--12438286	12	2.6	13	90	9	52	2	17	0	79	0.86
12438796--12438909	28	4.1	28	75	4	77	28	14	21	35	1.92
12438926--12439038	34	3.4	34	86	1	147	22	11	33	32	1.90
12440421--12440586	68	2.4	67	81	5	183	34	20	9	36	1.84
12443255--12443289	16	2.2	16	89	0	52	14	2	8	74	1.17
12443386--12443441	21	2.7	21	100	0	112	30	14	17	37	1.90
12447840--12447883	20	2.2	20	87	0	61	45	22	2	29	1.65
12449410--12449459	21	2.4	21	93	3	84	40	16	6	38	1.73
12449529--12449644	35	3.3	33	85	7	124	31	33	8	25	1.86
12449505--12449630	35	3.6	35	89	0	180	30	34	11	23	1.91
12450390--12450426	19	1.9	19	89	10	58	70	2	24	2	1.14
12462057--12462161	49	2.1	48	87	3	147	25	14	33	26	1.94
12462069--12462163	49	1.9	49	91	0	154	26	15	33	24	1.95
12466772--12466985	54	4.0	53	87	3	293	25	39	13	21	1.90
12477031--12477136	54	2.0	54	92	0	176	27	39	12	20	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12480268--12480495	80	2.8	81	86	1	332	25	37	15	21	1.93
12483100--12483151	21	2.5	21	96	0	95	44	15	5	34	1.70
12483191--12483330	35	4.0	35	88	0	199	30	32	9	28	1.88
12485040--12485069	2	15.5	2	93	6	53	50	0	0	50	1.00
12485030--12485069	19	2.1	19	90	0	62	50	2	0	47	1.14
12485069--12485094	2	13.0	2	100	0	52	50	0	50	0	1.00
12485144--12485243	39	2.6	39	90	3	148	27	36	15	22	1.93
12488992--12489095	38	2.7	40	87	6	158	21	39	18	21	1.93
12488996--12489095	19	5.2	19	64	9	67	22	41	17	20	1.91
12491676--12491727	27	2.0	26	88	3	77	32	19	21	26	1.97
12496471--12496666	80	2.5	80	82	1	250	32	11	23	32	1.90
12497265--12497338	20	3.7	20	67	8	60	35	13	14	36	1.86
12498891--12499046	37	4.2	37	86	3	199	23	35	9	30	1.87
12508061--12508108	22	2.2	22	92	0	78	31	12	18	37	1.88
12517503--12517552	15	3.3	15	77	0	55	70	2	2	26	1.09
12520956--12521046	6	14.5	6	76	19	64	78	0	17	0	0.72
12520956--12521049	50	2.0	46	89	8	113	76	0	19	0	0.75
12521040--12521099	26	2.2	28	85	11	81	50	13	28	8	1.70
12523251--12523300	25	2.0	25	100	0	100	36	4	24	36	1.74
12523252--12523302	5	10.2	5	89	0	75	37	1	23	37	1.66
12524904--12524938	16	2.2	16	89	0	52	48	8	2	40	1.49
12531187--12531224	19	2.0	19	94	0	67	42	28	0	28	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12534454--12534494	19	2.2	20	82	13	59	51	0	2	46	1.14
12535526--12535585	27	2.2	27	88	5	86	48	15	28	8	1.73
12538362--12538393	2	16.0	2	100	0	64	50	0	0	50	1.00
12539171--12539248	34	2.3	35	86	6	115	32	29	10	28	1.90
12539567--12539604	17	2.0	20	85	14	55	7	23	0	68	1.16
12539637--12539675	16	2.4	16	84	16	53	2	17	5	74	1.12
12539634--12539697	31	2.0	32	82	14	80	3	15	6	75	1.14
12541082--12541127	19	2.4	20	82	10	60	54	0	2	43	1.12
12542942--12542966	13	1.9	13	100	0	50	44	0	8	48	1.32
12547283--12547328	19	2.4	20	82	10	60	54	0	2	43	1.12
12552782--12552829	22	2.2	22	84	0	60	8	37	14	39	1.76
12556294--12556370	34	2.3	34	86	0	100	33	22	10	33	1.88
12556608--12556681	37	2.0	37	92	5	123	10	36	8	44	1.69
12558162--12558358	62	3.1	62	85	1	250	25	23	18	31	1.97
12562841--12562878	19	2.0	19	94	0	67	42	28	0	28	1.56
12578322--12578415	48	1.9	49	91	6	156	28	20	10	40	1.86
12578322--12578419	49	2.0	48	90	5	153	30	19	10	39	1.85
12579276--12579314	19	2.1	19	100	0	78	33	35	0	30	1.58
12583967--12583995	10	2.7	11	89	10	51	0	24	6	68	1.13
12584209--12584268	28	2.1	28	84	0	75	36	16	15	31	1.90
12586515--12586555	21	1.9	22	90	5	66	51	7	24	17	1.70
12586515--12586559	20	2.2	21	84	11	58	55	6	22	15	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12586513--12586560	21	2.3	20	79	10	60	56	6	22	14	1.61
12592953--12593116	63	2.6	63	84	1	204	26	18	30	24	1.98
12594272--12594346	35	2.1	35	85	0	96	25	32	12	30	1.92
12594698--12594726	2	14.5	2	100	0	58	0	48	0	51	1.00
12599130--12599177	21	2.3	20	82	10	69	16	25	4	54	1.60
12599135--12599175	21	1.9	22	95	5	75	19	26	4	48	1.69
12603285--12603334	25	2.0	25	100	0	100	44	16	12	28	1.83
12603963--12604040	35	2.2	35	81	0	93	35	17	21	24	1.95
12607382--12607483	39	2.6	39	85	0	141	23	14	36	25	1.93
12609552--12609582	2	15.5	2	93	0	53	54	0	0	45	0.99
12609595--12609737	54	2.6	54	94	0	241	23	44	14	18	1.86
12613765--12613885	35	3.5	34	83	4	154	26	12	23	37	1.91
12613769--12613905	69	2.0	70	84	4	179	29	14	21	34	1.93
12615051--12615204	54	2.8	55	85	2	211	23	37	16	22	1.94
12616109--12616162	24	2.2	24	80	0	63	72	1	24	1	1.05
12617803--12617856	17	3.1	17	70	15	56	29	16	11	42	1.83
12647682--12647829	39	3.8	39	87	0	188	38	25	10	25	1.88
12660567--12660648	2	40.5	2	92	2	128	46	0	3	48	1.19
12662182--12662228	5	9.4	5	81	6	51	72	0	21	6	1.07
12662184--12662227	14	2.9	15	80	10	54	70	0	22	6	1.11
12667892--12667935	21	2.2	20	83	4	52	2	0	29	68	1.02
12670131--12670164	15	2.3	15	90	5	52	58	5	11	23	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12670621--12670691	22	3.2	22	83	0	88	22	23	16	36	1.94
12670861--12670934	32	2.5	28	76	17	78	40	18	0	40	1.51
12670869--12670948	32	2.5	32	95	2	142	45	17	0	37	1.49
12671000--12671135	46	3.0	45	84	8	170	21	33	17	27	1.96
12671000--12671135	43	3.1	43	87	5	139	21	33	17	27	1.96
12672696--12672728	16	2.0	17	94	5	59	84	0	15	0	0.61
12674576--12674610	2	17.5	2	100	0	70	51	0	48	0	1.00
12686722--12686843	37	3.3	38	89	5	196	30	9	35	24	1.88
12703839--12704107	54	5.0	54	92	0	430	21	14	39	23	1.91
12703974--12704057	25	3.2	25	66	12	69	25	11	40	22	1.88
12706947--12707019	37	2.0	37	94	0	128	32	10	34	21	1.89
12707296--12707376	34	2.6	30	78	14	99	25	20	24	28	1.99
12707312--12707376	34	1.9	34	93	0	112	29	20	23	27	1.98
12710873--12711004	36	3.6	35	78	9	131	31	22	14	31	1.94
12712053--12712087	19	1.9	17	88	11	52	51	5	14	28	1.65
12713440--12713504	30	2.2	29	81	5	69	30	4	20	44	1.71
12717990--12718239	57	4.3	57	76	7	216	39	12	12	36	1.79
12717990--12718239	29	8.6	29	77	7	220	39	12	12	36	1.79
12718081--12718239	86	1.8	86	87	2	239	39	12	11	36	1.79
12721742--12721782	21	2.0	21	85	0	55	39	21	19	19	1.93
12728557--12728614	27	2.1	28	84	12	75	34	24	20	20	1.97
12739255--12739297	22	1.9	23	85	4	61	37	16	11	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12739270--12739613	29	11.9	28	79	7	314	36	13	10	39	1.79
12739524--12739605	26	3.0	25	82	8	74	35	14	12	37	1.84
12740315--12740362	21	2.3	21	85	7	62	47	16	14	20	1.82
12747718--12747801	42	2.0	42	85	0	114	28	15	29	26	1.96
12747898--12747945	2	24.0	2	91	0	78	50	2	2	45	1.25
12767738--12767873	56	2.4	56	89	8	199	41	7	25	25	1.81
12768398--12770159	181	9.7	180	80	5	1694	37	14	12	35	1.83
12768398--12770139	363	4.8	362	80	4	1758	37	14	12	35	1.83
12768398--12770159	544	3.2	541	81	5	1946	37	14	12	35	1.83
12770041--12770308	148	1.8	149	85	2	378	35	14	13	35	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59