genome.fa.s10.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  57  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20814836--20815090	62	4.1	62	91	3	415	49	15	16	18	1.80
20814836--20815090	123	2.1	125	93	3	435	49	15	16	18	1.80
20815461--20815905	76	5.9	76	91	0	685	37	20	17	24	1.94
20816033--20816074	19	2.2	19	91	0	66	61	7	11	19	1.52
20816569--20816674	28	3.6	28	74	12	95	33	15	8	43	1.76
20816569--20816685	61	1.9	61	89	0	180	34	15	8	41	1.77
20816980--20817391	81	5.1	81	93	1	648	41	10	7	41	1.66
20817644--20817692	9	5.7	9	79	16	50	32	10	26	30	1.89
20817729--20817806	23	3.3	23	87	3	102	38	17	23	20	1.93
20817821--20818035	49	4.3	50	86	4	308	33	17	24	24	1.96
20817821--20818035	101	2.1	99	88	4	306	33	17	24	24	1.96
20826496--20826541	2	23.5	2	95	4	85	47	0	0	52	1.00
20851079--20851143	18	3.9	18	69	22	61	58	0	41	0	0.98
20851098--20851145	6	8.0	6	85	0	60	54	0	45	0	0.99
20851080--20851149	30	2.3	30	100	0	140	55	0	44	0	0.99
20851079--20851144	24	2.8	24	80	0	78	57	0	42	0	0.98
20862885--20863605	279	2.6	280	87	2	1070	31	23	18	26	1.97
20864792--20864863	38	1.9	38	88	2	110	29	40	11	19	1.86
20864850--20865110	133	2.0	132	91	0	414	34	32	8	24	1.86
20866959--20867108	74	2.0	74	98	0	291	34	14	22	29	1.93
20874330--20874388	26	2.2	29	82	17	74	59	0	0	40	0.97
20876337--20876434	50	2.0	50	100	0	196	25	18	12	43	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20878823--20878926	52	2.0	51	88	1	154	35	11	17	34	1.86
20878939--20878979	2	20.5	2	100	0	82	51	0	48	0	1.00
20881724--20881776	2	27.0	2	96	3	99	0	0	49	50	1.00
20881855--20881912	2	29.0	2	96	0	107	0	0	48	51	1.00
20888068--20888116	23	2.1	23	82	14	57	32	22	6	38	1.79
20894977--20895096	35	3.4	35	89	0	177	20	23	15	40	1.91
20895083--20895185	35	2.9	35	84	2	109	29	22	20	28	1.98
20894973--20895134	70	2.3	70	76	7	175	23	23	17	35	1.96
20896576--20896611	16	2.2	16	90	0	54	63	11	0	25	1.27
20897396--20897541	74	2.0	74	93	0	247	40	10	12	36	1.78
20898062--20898113	25	2.1	25	82	7	61	51	9	5	32	1.58
20898574--20898601	2	14.0	2	100	0	56	50	0	0	50	1.00
20901161--20901375	100	2.2	99	90	2	333	42	10	1	45	1.49
20901422--20901496	9	8.3	9	70	11	55	49	5	1	44	1.33
20901449--20901496	17	2.8	17	81	9	62	52	2	0	45	1.12
20902043--20902076	18	1.9	17	88	5	50	5	23	5	64	1.38
20907229--20907405	49	3.6	49	97	0	327	29	4	6	59	1.42
20911636--20911717	40	2.0	40	88	4	121	53	10	4	30	1.57
20913210--20913252	16	2.8	15	79	6	59	53	9	0	37	1.33
20915023--20915107	2	42.0	2	81	11	93	47	4	1	45	1.31
20923498--20923904	208	2.0	208	96	0	751	33	18	13	34	1.90
20929455--20929518	32	2.0	33	81	9	78	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20938870--20938896	2	13.5	2	100	0	54	51	0	0	48	1.00
20942714--20942740	2	13.5	2	100	0	54	51	0	48	0	1.00
20944774--20944815	21	2.1	20	86	8	59	59	9	0	30	1.29
20948233--20948269	20	1.9	19	89	10	58	43	2	0	54	1.14
20949203--20949230	2	14.0	2	100	0	56	50	0	0	50	1.00
20952703--20952800	2	52.0	2	85	11	136	50	0	0	48	1.00
20960981--20961023	12	3.5	12	76	17	52	23	2	11	62	1.40
20960984--20961036	25	2.1	25	100	0	106	26	3	13	56	1.54
20960990--20961037	13	3.8	13	76	15	55	29	4	12	54	1.56
20963504--20963674	88	1.9	88	90	2	272	45	7	3	43	1.49
20980853--20980897	4	12.5	4	82	17	55	26	0	0	73	0.84
20980857--20980901	7	6.6	7	87	12	67	26	0	0	73	0.84
20981237--20981326	11	8.3	11	73	22	50	25	2	0	72	0.96
20981242--20981322	27	2.9	26	76	20	76	24	2	0	72	0.96
20981246--20981316	26	2.7	26	81	12	83	25	2	0	71	0.99
20981875--20981922	23	2.0	24	84	11	64	8	43	20	27	1.80
20982184--20982221	7	5.4	7	84	9	51	18	0	0	81	0.69
20982201--20982259	10	6.3	10	83	13	72	28	0	0	71	0.87
20982187--20982255	33	2.3	30	79	16	79	26	0	0	73	0.83
20987248--20987369	55	2.2	55	82	1	127	29	12	14	43	1.82
20989881--20989922	2	21.5	2	95	4	77	50	0	0	50	1.00
20989975--20990014	2	20.5	2	94	5	73	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20992757--20992987	39	5.9	39	98	0	444	35	22	28	13	1.93
21003075--21003524	225	2.0	225	88	1	670	32	15	11	40	1.82
21007454--21007491	2	19.5	2	94	5	69	50	0	0	50	1.00
21016022--21016072	15	3.3	15	81	15	59	49	1	0	49	1.12
21017864--21017903	21	2.0	20	90	9	64	17	27	0	55	1.43
21032483--21032606	63	2.0	63	83	3	160	25	32	9	32	1.88
21032952--21033015	31	2.1	31	90	0	101	26	12	18	42	1.86
21034508--21034540	17	1.9	17	93	0	57	66	3	21	9	1.33
21034573--21034604	16	2.0	16	93	0	55	78	0	21	0	0.76
21034692--21034723	16	2.0	17	88	11	50	68	0	25	6	1.12
21034751--21034848	25	3.9	25	73	6	72	68	5	26	0	1.10
21034633--21034804	58	3.0	58	83	1	220	55	6	34	3	1.44
21035051--21035093	2	21.5	2	90	0	68	55	0	0	44	0.99
21035143--21035185	2	21.5	2	90	0	68	55	0	0	44	0.99
21035008--21035186	92	2.0	91	100	0	349	38	3	6	50	1.45
21035427--21035662	60	4.0	60	88	3	295	24	18	34	23	1.96
21039254--21039520	117	2.3	118	83	4	335	20	20	31	27	1.97
21039419--21039606	87	2.2	86	87	4	263	19	21	28	29	1.98
21039302--21039733	204	2.1	204	86	0	603	21	19	28	30	1.97
21041970--21042265	145	2.0	145	84	1	387	28	20	20	29	1.98
21042001--21042269	145	1.9	145	90	0	430	28	21	20	29	1.98
21043658--21043826	31	5.5	31	87	1	223	37	18	17	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21043658--21043826	93	1.8	93	88	2	259	37	18	17	26	1.93
21051053--21051310	47	5.5	47	84	1	311	24	29	20	25	1.99
21051018--21051329	94	3.4	93	79	3	306	25	30	19	24	1.98
21051018--21051329	141	2.2	138	78	6	344	25	30	19	24	1.98
21051277--21051397	58	2.1	58	79	3	127	30	37	9	22	1.87
21053653--21053725	25	3.0	24	84	8	94	0	39	5	54	1.23
21066012--21066064	24	2.2	25	89	3	81	37	3	0	58	1.16
21066122--21066175	8	6.3	9	76	23	55	55	0	0	44	0.99
21066117--21066215	33	2.9	33	77	11	92	53	2	4	40	1.31
21066122--21066172	20	2.5	20	84	12	68	54	0	0	45	0.99
21066128--21066175	23	2.0	25	84	15	66	56	0	0	43	0.99
21086804--21086879	37	2.1	37	89	0	116	48	3	5	42	1.44
21089693--21089768	31	2.5	31	85	8	93	52	3	9	34	1.52
21107141--21107214	34	2.2	34	82	4	87	35	24	17	22	1.95
21107169--21107555	132	3.0	132	84	3	457	37	22	17	22	1.94
21107251--21107553	34	9.1	34	70	12	173	36	22	17	23	1.95
21111738--21111791	7	7.9	7	80	12	67	57	0	0	42	0.98
21111712--21111791	34	2.4	34	93	0	133	53	2	0	43	1.14
21111745--21111804	27	2.2	28	93	3	104	60	0	0	40	0.97
21111706--21111784	20	4.2	19	75	24	69	53	2	0	44	1.14
21111786--21111835	25	2.0	25	84	0	64	68	0	0	32	0.90
21127782--21127821	16	2.4	18	84	16	59	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21135094--21135199	43	2.5	43	85	0	140	40	15	17	26	1.89
21135575--21135760	86	2.2	86	79	5	198	38	13	19	27	1.90
21136564--21136676	43	2.6	43	80	5	138	39	14	18	27	1.89
21137059--21137166	43	2.5	43	80	5	121	39	12	22	25	1.88
21137400--21137500	43	2.3	43	79	0	121	42	15	14	26	1.86
21137512--21137612	43	2.3	43	84	3	123	34	15	20	28	1.94
21134865--21138773	494	7.9	495	88	1	5282	38	14	17	29	1.90
21137511--21137732	86	2.6	86	71	4	198	35	15	18	31	1.92
21137895--21137978	43	2.0	43	87	0	123	38	19	16	26	1.92
21137895--21137994	43	2.3	43	84	3	121	41	17	16	26	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59