genome.fa.s10.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  25  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9178931--9179132	73	2.8	73	83	4	221	39	16	19	24	1.92
9180148--9180176	2	14.5	2	100	0	58	48	0	0	51	1.00
9182051--9182162	43	2.6	43	84	0	152	23	18	34	23	1.96
9184208--9184375	43	3.9	43	89	3	257	25	34	16	23	1.95
9185542--9185581	20	2.0	20	90	4	64	40	10	32	17	1.83
9186909--9186970	20	3.2	20	80	15	67	64	4	0	30	1.14
9186922--9187012	24	3.8	23	71	15	69	64	4	0	30	1.13
9189631--9189955	81	4.0	81	93	1	546	25	38	13	21	1.91
9189761--9189955	44	4.8	44	72	22	192	25	40	13	20	1.89
9189794--9189938	36	3.8	36	75	18	148	24	41	15	19	1.89
9193799--9193847	5	10.4	5	86	8	52	0	20	0	79	0.73
9193798--9193848	4	12.2	4	88	12	52	0	23	0	76	0.79
9194108--9194214	35	3.1	35	79	0	115	42	28	6	21	1.78
9205986--9206170	81	2.3	81	84	1	237	29	36	10	23	1.89
9207447--9207493	23	2.0	23	88	8	69	59	0	17	23	1.37
9208446--9208480	2	17.5	2	93	0	61	45	0	2	51	1.16
9224484--9224561	28	2.8	28	88	0	111	32	11	24	32	1.91
9233155--9233193	10	3.8	10	80	6	51	25	2	20	51	1.60
9237314--9237356	18	2.4	18	85	11	61	53	6	25	13	1.65
9238188--9238326	73	1.9	73	83	2	181	38	20	17	22	1.93
9238955--9238993	19	2.1	19	85	0	51	56	0	2	41	1.13
9239533--9239587	20	2.6	21	88	5	76	67	0	32	0	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9251295--9251348	21	2.6	21	85	8	83	22	18	27	31	1.97
9253074--9253126	28	1.9	28	88	3	81	30	22	18	28	1.98
9257036--9258568	768	2.0	768	96	0	2850	30	19	17	32	1.95
9261084--9261143	20	3.0	20	80	7	70	55	1	5	38	1.32
9262065--9262089	13	1.9	13	100	0	50	48	8	0	44	1.32
9263313--9263350	19	2.0	19	100	0	76	42	31	0	26	1.56
9265994--9266039	15	3.1	15	87	0	65	56	17	2	23	1.52
9266392--9266438	20	2.3	21	81	3	60	51	0	8	40	1.33
9267383--9267407	13	1.9	13	100	0	50	48	8	0	44	1.32
9270779--9270822	21	2.2	20	84	12	54	25	9	4	61	1.45
9284730--9284768	21	2.0	20	90	10	62	28	23	5	43	1.75
9285957--9285990	18	1.9	18	88	5	52	2	17	5	73	1.16
9286212--9286244	10	3.4	10	87	8	50	87	3	9	0	0.63
9287271--9287334	29	2.2	29	83	8	76	37	4	26	31	1.77
9301451--9301481	15	2.1	15	93	0	53	54	6	3	35	1.42
9302335--9302401	35	1.9	35	84	6	91	46	4	8	40	1.56
9308625--9308753	64	2.0	64	96	3	242	38	20	4	35	1.73
9308635--9308775	64	2.2	63	87	7	196	39	23	4	31	1.74
9308789--9308917	43	3.0	42	89	5	188	22	33	18	25	1.97
9309720--9309753	3	11.3	3	87	0	50	64	0	35	0	0.94
9316363--9316444	42	1.9	43	85	2	112	23	35	17	24	1.95
9321383--9321569	35	5.3	35	82	6	218	32	5	14	47	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9326604--9326651	21	2.3	20	79	10	60	14	22	6	56	1.61
9326609--9326649	21	1.9	22	90	5	66	17	24	7	51	1.70
9326662--9326718	11	5.4	11	83	8	64	1	26	7	64	1.28
9345079--9345241	82	2.0	81	97	0	299	44	22	4	27	1.71
9345351--9345479	68	1.9	68	84	6	172	20	40	9	30	1.83
9347025--9347101	35	2.2	35	83	0	100	38	2	22	36	1.68
9347085--9347173	35	2.6	34	84	10	117	35	3	17	42	1.66
9347089--9347188	35	2.9	34	77	14	96	35	3	19	43	1.66
9368778--9368906	43	3.0	42	86	3	161	24	17	34	23	1.96
9369100--9369231	39	3.4	38	82	8	149	25	21	20	31	1.98
9373612--9373660	23	2.1	23	88	0	71	28	38	6	26	1.80
9373669--9373778	43	2.6	43	83	2	123	22	36	16	24	1.94
9375734--9375778	20	2.2	20	88	7	65	2	20	4	73	1.11
9376575--9376764	55	3.6	55	83	10	259	22	14	36	26	1.93
9376636--9376727	48	1.9	48	90	0	148	26	15	31	27	1.95
9378965--9379080	44	2.6	45	91	1	189	23	8	37	30	1.85
9379921--9380022	35	2.9	35	85	5	109	27	36	11	24	1.90
9386743--9386851	35	3.1	35	93	0	182	27	37	9	25	1.86
9393195--9393296	37	2.6	39	80	7	111	24	17	35	22	1.95
9393264--9393473	54	3.9	54	90	0	323	20	12	41	24	1.87
9411060--9411090	2	15.5	2	100	0	62	51	0	0	48	1.00
9411265--9411448	54	3.4	53	87	4	253	22	13	40	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9421010--9421111	51	2.0	50	96	1	186	22	24	27	24	1.99
9422300--9422340	2	20.5	2	100	0	82	51	0	48	0	1.00
9422815--9422856	22	1.9	22	90	0	66	26	0	2	71	0.98
9422806--9422857	10	4.8	10	75	15	50	21	0	3	75	0.97
9431374--9431413	21	2.0	21	85	9	57	25	10	20	45	1.81
9432777--9432870	35	2.6	37	80	17	108	28	32	13	24	1.94
9432833--9432936	52	2.0	52	92	0	172	31	32	13	22	1.92
9434446--9434481	17	2.2	16	90	5	54	41	16	0	41	1.48
9436230--9436270	21	1.9	22	90	5	66	56	7	19	17	1.64
9436228--9436275	21	2.3	20	79	10	60	60	6	18	14	1.55
9436229--9436276	22	2.2	21	81	3	60	62	6	16	14	1.51
9443257--9443310	21	2.6	20	82	11	56	66	1	5	25	1.23
9443749--9443819	35	2.0	35	83	5	90	21	5	33	39	1.77
9443838--9443915	33	2.3	34	84	8	97	30	11	25	32	1.91
9444131--9444187	25	2.3	25	85	14	82	42	14	29	14	1.84
9455402--9455529	67	1.9	67	87	3	186	25	10	28	35	1.90
9455785--9455824	19	2.2	19	86	4	55	50	0	5	45	1.23
9456417--9456453	18	2.1	18	89	0	56	64	0	35	0	0.94
9456854--9456897	22	2.0	22	86	8	63	40	6	20	31	1.79
9457594--9457701	38	2.8	38	81	5	137	25	12	33	27	1.93
9459365--9459465	38	2.6	40	87	3	143	21	17	39	20	1.92
9459489--9459542	18	3.0	18	88	0	72	25	7	12	53	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9461524--9461576	27	2.0	26	89	7	81	13	24	15	47	1.81
9461573--9461636	5	12.6	5	86	8	69	3	20	0	76	0.92
9461586--9461636	12	4.6	11	75	15	52	0	21	0	78	0.75
9461793--9461872	34	2.4	34	85	8	101	35	26	11	27	1.90
9464916--9465048	43	3.0	46	85	6	191	23	36	15	24	1.93
9465040--9465084	20	2.2	21	84	11	58	40	26	2	31	1.68
9465874--9466130	134	1.9	133	98	0	487	36	13	6	43	1.69
9466414--9466707	92	3.2	92	84	1	374	37	28	10	24	1.88
9471693--9471862	43	3.9	43	88	2	223	20	34	18	27	1.95
9473110--9473389	91	3.1	91	82	3	276	38	26	11	24	1.89
9473255--9473330	35	2.2	35	82	0	89	36	27	11	23	1.90
9476395--9476500	38	2.7	40	85	2	135	23	39	16	20	1.92
9477367--9477416	19	2.6	19	74	22	59	44	8	36	12	1.71
9478969--9479102	39	3.5	39	77	4	128	33	19	21	25	1.97
9479305--9479433	43	3.0	42	85	7	179	24	34	16	25	1.95
9484120--9484163	22	2.0	22	86	8	63	43	6	20	29	1.78
9484857--9484974	38	3.1	37	87	2	155	22	12	35	28	1.91
9484875--9484996	38	3.2	35	82	11	111	21	13	39	25	1.90
9487856--9487975	42	2.9	42	92	0	186	23	35	20	20	1.96
9497350--9497442	43	2.2	43	88	3	134	23	34	17	24	1.96
9500037--9500074	19	2.0	19	100	0	76	26	0	31	42	1.56
9501293--9501317	13	1.9	13	100	0	50	44	0	8	48	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9526448--9526476	2	15.0	2	92	7	51	48	0	0	51	1.00
9533336--9533471	43	3.2	43	86	0	191	26	33	14	25	1.95
9553546--9553648	38	2.6	40	84	3	138	23	39	15	21	1.91
9573164--9573191	2	14.0	2	100	0	56	0	50	0	50	1.00
9573152--9573248	51	1.9	49	97	2	176	15	43	4	36	1.66
9573215--9573242	2	14.0	2	100	0	56	0	50	0	50	1.00
9583116--9583174	26	2.3	26	79	5	66	1	28	3	66	1.18
9587570--9587599	15	2.1	14	93	6	51	13	6	0	80	0.91
9588262--9588302	21	2.0	20	85	4	55	51	14	2	31	1.56
9589669--9589834	86	1.9	86	95	0	296	24	18	34	22	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59