genome.fa.s10.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  31  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11321906--11321968	20	3.2	20	86	2	92	30	39	3	26	1.72
11321967--11322076	43	2.6	43	91	2	168	19	38	20	22	1.94
11329162--11329224	20	3.2	20	90	2	101	30	41	3	25	1.71
11329223--11329332	43	2.6	43	89	2	159	20	37	20	22	1.95
11336498--11336551	25	2.2	25	90	3	83	20	27	18	33	1.96
11337605--11337654	26	1.9	26	100	0	100	34	30	8	28	1.86
11337900--11337942	15	2.8	16	79	13	63	0	34	0	65	0.93
11338877--11338923	19	2.6	19	90	6	71	40	0	0	59	0.97
11340791--11340836	20	2.4	18	86	13	58	30	2	2	65	1.16
11350081--11350112	16	2.0	16	93	0	55	9	31	25	34	1.87
11354146--11354267	43	2.8	43	87	4	167	23	18	39	18	1.92
11354253--11354315	20	3.2	20	90	2	101	25	3	41	30	1.71
11355398--11355427	11	2.7	11	100	0	60	60	0	26	13	1.34
11358571--11358688	37	3.2	37	86	4	175	28	10	38	22	1.86
11363879--11363934	27	2.1	27	100	0	112	21	26	19	32	1.97
11370061--11370163	38	2.6	40	80	9	122	20	35	19	24	1.95
11377336--11377438	54	1.9	54	95	0	188	25	45	10	18	1.81
11377408--11377551	38	3.7	38	82	3	164	23	35	15	25	1.94
11377408--11377551	76	1.9	77	88	5	220	23	35	15	25	1.94
11379202--11379318	58	2.1	55	85	4	153	39	10	17	33	1.83
11383719--11383833	37	3.1	37	89	2	178	24	33	10	31	1.89
11416590--11416703	58	2.0	57	89	5	176	58	8	1	30	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11418765--11419063	157	1.9	157	86	2	431	27	16	20	35	1.94
11429311--11429402	46	2.0	46	97	0	175	26	8	33	31	1.87
11431456--11431488	18	1.9	17	88	11	50	36	3	24	36	1.71
11432491--11432626	36	3.7	36	77	13	125	25	40	13	20	1.89
11433697--11433737	13	3.2	13	89	6	57	0	26	0	73	0.84
11433690--11433752	25	2.6	23	78	14	65	1	26	0	71	0.95
11433690--11433745	12	4.8	11	79	20	53	1	26	0	71	0.96
11433712--11433752	14	2.8	15	85	7	57	2	24	0	73	0.96
11435636--11435672	2	18.5	2	88	0	56	48	2	2	45	1.30
11435702--11435821	36	3.4	36	86	3	163	29	36	12	21	1.90
11437301--11437335	13	2.8	12	87	8	52	68	0	31	0	0.90
11440342--11440514	39	4.5	39	88	3	228	23	14	36	26	1.93
11446684--11446719	18	2.0	18	100	0	72	27	11	22	38	1.88
11448581--11448700	58	2.1	57	90	1	186	37	16	9	36	1.81
11458738--11458818	25	3.1	25	80	8	74	20	17	34	27	1.95
11458759--11458818	25	2.4	25	88	0	84	23	15	33	28	1.94
11467501--11467578	22	3.5	22	79	6	86	26	25	25	21	2.00
11474951--11475288	84	4.0	84	80	6	337	23	33	17	25	1.96
11474951--11475288	43	8.0	44	75	11	244	23	33	17	25	1.96
11479917--11479989	37	2.0	37	88	0	110	31	10	35	21	1.88
11484258--11484414	63	2.5	63	91	3	253	25	18	31	24	1.97
11486161--11486301	42	3.4	42	80	5	135	20	19	33	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11486182--11486314	42	3.2	42	85	2	142	20	18	35	25	1.95
11489114--11489560	225	2.0	224	93	0	759	28	20	9	40	1.84
11492565--11492605	21	1.9	22	85	5	57	51	9	24	14	1.72
11492563--11492610	21	2.3	20	75	10	51	56	8	22	12	1.63
11495577--11495997	211	2.0	210	99	0	824	33	21	13	30	1.92
11500918--11501256	43	8.0	41	80	6	338	24	33	17	24	1.96
11500924--11501257	127	2.6	128	87	4	460	23	34	17	24	1.96
11507036--11507181	39	3.7	39	84	8	181	24	39	15	20	1.92
11507298--11507325	2	14.0	2	100	0	56	50	0	0	50	1.00
11512398--11512450	27	2.0	27	85	10	74	39	0	16	43	1.49
11512529--11512598	35	2.0	34	91	2	113	27	27	11	32	1.91
11517313--11517362	2	25.0	2	95	0	91	50	2	0	48	1.12
11525601--11525652	21	2.5	21	96	0	95	11	25	23	40	1.88
11526065--11526166	38	2.7	38	82	11	120	22	39	16	21	1.92
11528197--11528337	68	2.1	68	89	2	212	36	9	17	35	1.83
11528220--11528458	68	3.5	68	81	4	250	36	10	17	34	1.85
11529813--11529845	17	1.9	17	88	11	50	42	15	3	39	1.62
11530018--11530217	28	7.0	28	86	5	256	38	13	8	40	1.75
11529997--11530214	29	7.5	28	85	6	256	40	12	7	39	1.72
11530018--11530214	57	3.4	57	88	3	270	38	13	8	39	1.75
11531992--11533354	171	8.0	171	75	5	1103	33	15	14	37	1.88
11531985--11534924	341	8.7	335	72	9	1353	33	15	14	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11531966--11532941	512	1.9	512	80	5	1139	33	16	14	35	1.89
11531966--11533313	512	2.6	511	77	5	1136	33	15	14	37	1.87
11533221--11533483	140	1.9	140	86	3	377	30	13	14	41	1.85
11533362--11534924	171	9.1	169	78	5	1314	32	14	14	37	1.88
11534108--11534150	10	4.3	10	77	11	52	39	9	2	48	1.48
11533362--11534917	685	2.3	682	79	5	1593	32	14	14	37	1.87
11533351--11534602	514	2.4	509	80	7	1350	33	14	15	37	1.88
11537126--11537173	22	2.2	22	85	7	62	45	8	33	12	1.72
11537131--11537173	22	2.1	21	87	12	63	46	9	32	11	1.72
11537581--11537720	43	3.3	43	75	11	151	35	25	15	24	1.94
11543889--11543930	2	21.0	2	100	0	84	50	0	0	50	1.00
11547902--11547970	28	2.8	24	78	18	77	40	2	7	49	1.45
11549053--11549088	19	1.9	18	94	5	63	36	5	0	58	1.22
11565596--11565622	2	13.5	2	100	0	54	51	0	48	0	1.00
11567809--11568094	61	4.7	61	87	1	394	27	30	16	25	1.97
11567809--11568097	122	2.4	122	89	2	438	27	30	16	25	1.97
11568133--11568172	2	20.0	2	90	10	64	47	2	0	50	1.14
11570148--11570250	38	2.6	40	84	3	129	23	37	15	23	1.93
11572586--11572626	19	2.2	19	86	8	57	51	2	0	46	1.14
11580540--11580693	42	3.7	41	82	5	166	24	20	31	24	1.98
11580540--11580693	84	1.8	84	81	0	191	24	20	31	24	1.98
11583256--11583285	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11583329--11583441	42	2.7	42	91	1	172	19	22	38	20	1.94
11587898--11587940	19	2.3	18	76	4	50	46	2	4	46	1.36
11588309--11588367	2	30.5	2	83	6	77	55	0	0	44	0.99
11588309--11588366	20	2.9	20	92	5	91	56	0	0	43	0.99
11592112--11592179	35	1.9	36	90	3	111	17	13	38	30	1.88
11595971--11596432	179	2.6	179	82	6	456	36	16	14	32	1.89
11597682--11597793	58	1.9	58	90	0	179	33	8	19	37	1.83
11602765--11602968	101	2.0	101	96	0	372	36	15	22	25	1.93
11608199--11608460	68	3.9	68	84	3	303	34	19	9	37	1.83
11612059--11612099	21	1.9	22	90	5	66	51	7	24	17	1.70
11612059--11612103	20	2.2	21	84	11	58	55	6	22	15	1.63
11612057--11612104	21	2.3	20	79	10	60	56	6	22	14	1.61
11617025--11617133	52	2.1	52	87	0	155	19	16	39	24	1.91
11618332--11618364	2	16.5	2	93	0	57	51	3	0	45	1.16
11618410--11618519	43	2.6	43	88	2	150	20	37	19	23	1.94
11619315--11619352	19	2.0	20	94	5	69	36	15	26	21	1.93
11629906--11630016	28	3.9	28	76	6	114	37	11	12	37	1.80
11629911--11630000	31	3.0	31	74	16	91	38	10	11	40	1.74
11629911--11630041	59	2.2	60	83	4	158	37	10	9	41	1.73
11656043--11656069	2	13.5	2	100	0	54	51	0	0	48	1.00
11656131--11656169	16	2.3	18	82	13	55	69	5	25	0	1.09
11656661--11656687	5	5.4	5	100	0	54	81	0	18	0	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11658860--11658902	21	2.0	22	95	4	79	27	6	23	41	1.80
11669773--11669818	20	2.3	20	96	0	83	28	4	21	45	1.71
11673751--11673790	19	2.0	20	85	9	55	47	20	10	22	1.79
11677306--11677363	27	2.1	29	87	6	84	22	15	24	37	1.93
11682003--11682060	27	2.1	28	83	6	73	39	24	12	24	1.89
11693313--11693352	20	2.1	19	85	4	53	7	22	7	62	1.47
11694379--11694419	21	1.9	21	85	5	55	53	7	21	17	1.67
11694377--11694424	21	2.3	20	75	10	51	58	6	20	14	1.58
11697360--11697503	36	4.1	35	82	7	159	22	13	34	29	1.93
11699910--11700033	2	61.0	2	82	9	153	45	1	3	49	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59