genome.fa.s10.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  30  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11075597--11075655	19	3.1	18	83	11	73	72	1	25	0	0.93
11075750--11075803	6	8.8	6	77	2	54	74	1	24	0	0.92
11075729--11075803	24	3.1	26	79	12	79	70	2	26	0	1.00
11075750--11075797	18	2.7	18	78	12	62	75	2	22	0	0.91
11075820--11075858	17	2.3	17	86	8	53	61	0	35	2	1.10
11075872--11075903	12	2.6	13	85	14	50	78	0	21	0	0.76
11075944--11075974	16	2.0	15	93	6	53	77	0	22	0	0.77
11077787--11077892	37	2.9	37	94	0	176	34	8	33	22	1.85
11078005--11078048	23	1.9	23	90	0	70	38	11	13	36	1.81
11079254--11079487	60	4.0	60	83	5	289	26	18	30	24	1.98
11081298--11081335	16	2.3	17	81	9	51	52	2	0	44	1.14
11081491--11081624	35	3.8	35	85	2	162	44	19	17	18	1.88
11081491--11081648	70	2.3	70	80	2	174	44	19	17	18	1.87
11082742--11082823	36	2.3	36	81	10	98	28	29	13	29	1.94
11082831--11082933	52	2.0	52	94	3	181	31	30	16	22	1.96
11083740--11083784	15	3.1	15	78	12	58	77	2	17	2	0.97
11084682--11084779	29	3.4	29	88	0	142	15	22	12	50	1.77
11084649--11084787	58	2.4	58	79	2	136	15	25	10	48	1.77
11089320--11089595	102	2.7	102	80	1	322	22	19	14	43	1.87
11091862--11091902	21	1.9	22	90	5	66	51	7	24	17	1.70
11091862--11091906	20	2.2	21	84	11	58	55	6	22	15	1.63
11091860--11091907	21	2.3	20	79	10	60	56	6	22	14	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11096640--11096783	73	2.0	72	98	1	272	38	4	9	46	1.56
11097207--11097237	2	15.5	2	93	0	53	51	3	0	45	1.17
11097207--11097241	8	4.4	8	92	0	52	51	5	0	42	1.25
11097907--11097999	35	2.7	35	87	0	150	44	21	18	16	1.87
11098298--11098413	29	4.0	29	80	1	108	12	22	11	53	1.70
11098364--11098411	14	3.4	14	74	5	51	14	22	12	50	1.77
11100328--11100353	3	8.7	3	100	0	52	30	0	0	69	0.89
11103453--11103505	21	2.5	21	82	11	56	67	0	7	24	1.16
11112899--11112932	2	17.0	2	100	0	68	50	0	0	50	1.00
11113288--11113331	20	2.1	21	87	4	63	56	2	22	18	1.52
11113492--11113558	33	2.1	32	88	2	98	29	16	7	46	1.74
11113533--11113608	39	1.9	39	91	0	125	46	10	3	39	1.57
11116192--11116306	43	2.7	43	81	0	131	26	19	32	21	1.97
11116315--11116374	23	2.6	23	94	0	102	21	3	41	33	1.70
11116375--11116423	2	24.5	2	100	0	98	51	0	0	48	1.00
11116422--11116458	3	12.7	3	94	5	67	32	0	32	35	1.58
11119119--11119272	71	2.2	72	83	8	192	27	20	20	31	1.97
11119997--11120117	58	2.1	57	80	11	131	33	22	15	28	1.95
11119942--11120153	61	3.6	59	75	11	157	30	21	16	32	1.95
11121030--11121083	21	2.6	21	81	0	72	38	9	16	35	1.81
11121828--11121924	48	2.0	48	89	0	149	43	2	16	38	1.60
11122109--11122307	68	2.9	68	82	3	222	38	9	17	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11123555--11123610	19	2.9	18	84	12	67	73	0	25	1	0.93
11123559--11123633	20	3.5	21	80	14	66	70	0	28	1	0.95
11123564--11123610	11	4.7	11	75	24	50	72	0	25	2	0.96
11123572--11123634	26	2.5	26	75	12	67	71	0	28	0	0.86
11128520--11128565	20	2.3	20	96	0	83	41	21	4	32	1.73
11132649--11132692	20	2.2	20	87	0	61	36	15	11	36	1.84
11145525--11145551	2	13.5	2	100	0	54	51	0	0	48	1.00
11146662--11147601	86	10.8	86	78	5	822	22	19	31	26	1.98
11147178--11147251	31	2.4	31	79	4	87	28	16	28	27	1.97
11147239--11147364	65	2.0	63	79	7	137	21	18	30	28	1.96
11148989--11149154	81	2.1	80	83	7	203	27	31	18	22	1.97
11148989--11149154	80	2.1	80	83	7	203	27	31	18	22	1.97
11152343--11152367	13	1.9	13	100	0	50	48	8	0	44	1.32
11155613--11155775	55	3.0	55	87	0	236	44	31	12	11	1.78
11157173--11157376	37	5.3	38	72	13	175	28	8	35	27	1.86
11157281--11157418	45	3.2	45	65	15	121	25	7	35	31	1.83
11157244--11157418	82	2.1	82	92	0	287	26	8	34	30	1.85
11159039--11159570	104	5.1	103	75	5	428	21	34	15	28	1.94
11159205--11159282	23	3.4	23	78	0	75	25	32	14	28	1.94
11159039--11159556	208	2.5	207	86	2	716	22	34	14	28	1.94
11159516--11159571	23	2.4	23	84	0	67	21	37	12	28	1.90
11159378--11159754	185	2.0	185	86	0	529	24	33	12	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11159596--11159650	23	2.4	23	78	6	58	30	23	9	36	1.86
11159542--11160010	104	4.5	103	77	2	391	24	34	12	28	1.92
11159561--11160010	208	2.2	208	88	0	648	24	33	12	29	1.92
11159170--11159962	393	2.0	393	86	1	1124	23	33	13	29	1.93
11159806--11159868	23	2.7	23	80	0	63	22	33	14	30	1.93
11159659--11160064	104	3.9	102	75	8	336	23	34	13	28	1.93
11159562--11160066	208	2.4	208	84	2	550	24	33	12	29	1.93
11159265--11160154	393	2.3	393	80	3	945	24	34	13	28	1.92
11159964--11160147	81	2.3	81	84	1	235	25	34	13	26	1.92
11160095--11160170	23	3.3	23	83	0	89	22	38	10	28	1.87
11173623--11173725	38	2.6	39	89	6	147	22	16	38	22	1.92
11176909--11177006	43	2.3	43	85	3	126	25	17	36	20	1.94
11183465--11183503	20	1.9	21	84	5	53	20	2	5	71	1.17
11185148--11185279	42	3.1	42	94	2	221	25	33	17	24	1.96
11186281--11186331	26	2.0	26	88	0	75	41	17	9	31	1.82
11202185--11202720	268	2.0	267	87	1	777	36	14	15	33	1.89
11205063--11205231	72	2.3	72	83	8	193	21	18	21	37	1.94
11207029--11207074	24	2.0	23	82	4	56	21	17	34	26	1.95
11231854--11231911	18	3.2	18	80	11	64	37	1	3	56	1.26
11231859--11231918	18	3.3	18	76	9	59	36	5	3	55	1.38
11232983--11233115	62	2.1	62	90	0	203	25	25	19	29	1.99
11233346--11233468	43	2.9	43	85	2	158	22	35	17	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11233506--11233530	2	12.5	2	100	0	50	48	0	0	52	1.00
11237406--11237444	19	2.1	19	95	0	69	41	10	23	25	1.86
11240806--11240924	43	2.8	43	80	0	148	21	34	19	24	1.96
11240949--11240985	2	18.5	2	94	0	65	48	0	2	48	1.15
11240975--11241223	124	2.0	123	97	2	473	41	16	12	29	1.85
11243798--11243881	2	41.5	2	97	2	159	50	0	1	48	1.08
11244022--11244126	43	2.4	43	87	6	142	20	39	17	22	1.93
11251803--11251839	2	18.5	2	94	0	65	48	0	2	48	1.15
11251850--11251918	20	3.4	20	85	2	84	28	40	4	26	1.75
11251917--11252014	43	2.3	43	83	3	126	17	37	19	25	1.93
11252026--11253190	590	2.0	589	93	2	1993	36	21	11	31	1.88
11253865--11253917	27	2.0	28	88	7	83	32	26	18	22	1.97
11255276--11255364	21	4.2	21	80	0	88	28	16	19	35	1.93
11255276--11255364	42	2.1	42	82	0	106	28	16	19	35	1.93
11256914--11256944	2	15.5	2	100	0	62	0	48	0	51	1.00
11258029--11258073	22	2.1	22	84	8	58	48	20	6	24	1.73
11264849--11264884	18	2.1	18	89	5	56	30	0	36	33	1.58
11274056--11274196	51	2.7	51	85	2	174	46	14	7	32	1.71
11284992--11285020	2	14.5	2	100	0	58	48	0	0	51	1.00
11286608--11286667	30	2.1	29	81	6	68	31	8	21	38	1.83
11294914--11294990	29	2.6	29	76	13	70	20	9	2	67	1.30
11298504--11298528	13	1.9	13	100	0	50	24	24	20	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11300064--11300102	2	19.5	2	94	0	69	46	0	2	51	1.14
11304563--11304618	23	2.4	23	93	0	94	17	28	16	37	1.91
11308012--11308167	42	3.7	42	82	2	204	21	33	23	21	1.97
11308858--11308914	23	2.5	23	97	0	105	40	14	28	17	1.88
11315055--11315091	10	3.5	11	89	10	51	2	18	0	78	0.87
11315055--11315089	16	2.2	16	90	5	54	2	17	0	80	0.84
11315259--11315305	24	1.9	25	83	12	62	34	25	12	27	1.92
11319036--11319204	43	4.0	43	82	2	189	21	36	19	22	1.95
11319049--11319204	42	3.7	43	82	2	190	21	36	19	21	1.95
11319249--11319290	2	21.0	2	100	0	84	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59