genome.fa.s10.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  16  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5752609--5752638	13	2.3	13	100	0	60	53	6	6	33	1.53
5752637--5752674	18	2.1	18	90	9	60	68	0	5	26	1.11
5758034--5758230	73	2.7	72	87	2	286	39	13	21	25	1.90
5762029--5762101	35	2.1	35	86	0	101	32	34	9	23	1.87
5763369--5763410	19	2.2	19	91	0	66	38	9	35	16	1.81
5765688--5765746	27	2.3	26	79	5	66	64	5	28	1	1.24
5771458--5771625	67	2.5	66	78	6	196	35	24	14	26	1.93
5774419--5774571	43	3.5	42	82	7	155	23	33	16	25	1.96
5774605--5774630	2	13.0	2	100	0	52	50	0	0	50	1.00
5781682--5781868	66	2.8	67	83	2	252	36	26	12	24	1.91
5793389--5793589	73	2.8	73	79	0	197	41	14	17	25	1.89
5798800--5798832	14	2.4	14	90	5	50	42	3	3	51	1.32
5800000--5800046	18	2.4	20	82	13	62	78	0	19	2	0.85
5803873--5803914	19	2.2	19	83	8	50	59	2	0	38	1.10
5804390--5804465	28	2.7	28	85	0	98	34	15	19	30	1.93
5805039--5805075	10	3.5	11	82	10	51	24	0	21	54	1.45
5828379--5828418	21	1.9	21	100	0	80	50	5	7	37	1.53
5831159--5831207	2	24.5	2	100	0	98	51	0	0	48	1.00
5831585--5831689	27	3.9	26	74	10	104	48	16	20	14	1.80
5832298--5832387	45	2.0	45	100	0	180	33	24	13	28	1.93
5832938--5832975	19	2.0	19	85	10	51	10	26	7	55	1.61
5841961--5842001	10	4.2	10	78	15	50	68	2	0	29	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5841967--5842008	18	2.4	17	92	4	66	76	2	0	21	0.90
5852402--5852484	30	2.8	30	92	1	132	54	1	2	42	1.21
5855873--5855913	5	8.2	5	84	15	50	0	21	0	78	0.76
5855869--5855913	14	2.9	16	80	12	67	0	22	0	77	0.76
5855867--5855962	25	3.9	25	77	22	105	3	22	0	73	0.97
5855868--5855938	13	5.7	13	71	22	55	1	23	0	74	0.90
5855866--5855935	6	11.3	6	77	17	63	1	24	0	74	0.90
5856485--5856531	23	1.9	26	83	12	64	6	31	2	59	1.34
5858568--5858670	29	3.5	29	79	9	102	37	0	5	56	1.24
5858642--5858704	24	2.7	23	76	13	67	41	0	1	57	1.08
5859151--5859200	22	2.3	21	83	13	57	48	2	4	46	1.32
5859109--5859215	7	15.0	7	66	20	53	49	1	3	44	1.31
5859166--5859206	22	1.9	21	85	5	55	51	0	2	46	1.14
5870181--5870216	8	4.5	8	93	6	56	8	0	2	88	0.59
5870181--5870216	17	2.2	17	90	9	58	8	0	2	88	0.59
5870184--5870218	9	4.0	9	92	7	54	11	0	5	82	0.82
5870250--5870290	3	13.7	3	100	0	82	68	0	0	31	0.90
5870248--5870340	6	16.3	6	80	10	54	74	0	3	22	0.96
5870247--5870340	12	8.4	10	81	10	71	73	0	3	23	0.98
5880155--5880201	22	2.1	23	84	4	60	51	14	6	27	1.67
5880240--5880460	27	8.3	27	69	6	83	17	27	23	31	1.97
5881183--5881354	52	3.3	52	84	5	224	40	17	20	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5881253--5881331	25	3.1	25	65	13	61	41	17	22	17	1.90
5884769--5885027	43	6.0	42	86	2	320	23	34	17	23	1.96
5884773--5885027	129	2.0	129	86	3	361	23	34	17	23	1.95
5886780--5886947	27	6.3	26	73	7	122	19	32	20	27	1.97
5886838--5886981	53	2.7	53	74	8	141	20	27	21	30	1.98
5886848--5886948	26	3.8	27	79	8	84	19	28	21	29	1.98
5891634--5891681	23	2.1	23	100	0	96	31	35	12	20	1.90
5896548--5896596	16	3.1	16	81	18	59	51	0	2	46	1.12
5896553--5896611	31	1.9	30	82	3	73	54	0	1	44	1.10
5907415--5907461	22	2.2	22	81	11	53	48	2	10	38	1.50
5908873--5909029	75	2.1	75	95	0	278	36	9	31	22	1.86
5908997--5909032	18	2.0	18	88	0	54	36	2	38	22	1.69
5914574--5914737	79	2.1	78	91	2	267	15	21	6	55	1.63
5926959--5926985	2	13.5	2	100	0	54	48	0	0	51	1.00
5927080--5927163	36	2.3	36	89	0	132	28	36	8	26	1.85
5927154--5927274	35	3.4	35	73	2	116	26	39	12	21	1.89
5927143--5927311	71	2.4	71	89	0	266	27	38	11	22	1.89
5931613--5931650	20	1.9	20	88	0	58	34	13	15	36	1.87
5933039--5933275	119	2.0	118	98	0	447	26	16	6	50	1.69
5936610--5936685	21	3.6	21	77	7	82	46	1	2	50	1.24
5942206--5942340	69	2.0	69	95	0	243	28	14	20	37	1.91
5943664--5943693	15	2.0	15	93	0	51	46	10	0	43	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5951144--5951175	12	2.5	13	90	10	57	21	0	6	71	1.07
5951419--5951553	70	1.9	70	93	0	234	27	34	22	16	1.95
5952519--5952563	18	2.5	18	85	0	63	20	0	0	80	0.72
5952814--5953465	120	5.4	120	86	1	853	36	21	13	28	1.92
5952814--5953470	60	10.9	61	84	4	773	36	21	13	28	1.91
5969708--5969767	28	2.1	28	84	6	77	25	21	20	33	1.97
5978906--5978930	7	3.6	7	100	0	50	0	28	0	72	0.86
5996499--5996542	22	2.0	23	95	4	81	50	9	9	31	1.65
5997438--5997661	115	2.0	112	92	4	369	49	9	11	29	1.70
5998094--5998158	25	2.6	26	69	16	64	43	7	27	21	1.80
5998464--5998544	39	2.0	40	92	2	137	43	19	9	27	1.83
6006938--6006983	20	2.3	20	92	0	74	47	17	4	30	1.67
6010325--6010500	79	2.3	78	90	5	277	48	7	0	42	1.35
6011886--6011958	34	2.1	34	85	9	96	27	1	12	58	1.42
6012604--6012670	34	2.0	34	88	5	100	22	0	16	61	1.34
6012607--6012680	34	2.2	34	80	9	89	27	0	14	58	1.37
6012974--6013068	35	2.8	33	74	13	104	32	26	13	27	1.94
6012947--6013098	67	2.3	67	84	2	189	32	26	13	26	1.94
6012974--6013091	32	3.6	31	75	10	101	32	24	14	28	1.94
6014049--6014073	2	12.5	2	100	0	50	48	0	0	52	1.00
6022225--6022348	32	3.8	32	75	10	115	33	27	13	25	1.93
6022225--6022357	67	2.0	67	89	2	205	35	27	12	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6029905--6029936	2	16.0	2	100	0	64	50	0	0	50	1.00
6030598--6030659	31	2.0	31	90	0	97	22	20	8	48	1.76
6034360--6034393	16	2.1	17	88	5	52	76	0	2	20	0.92
6034381--6034444	24	2.7	25	71	9	71	64	0	12	23	1.28
6034680--6034730	3	17.0	3	87	0	66	68	1	1	27	1.11
6034985--6035032	25	1.9	25	95	0	87	33	6	12	47	1.66
6037130--6037188	10	5.8	10	82	9	66	66	1	1	30	1.12
6037125--6037165	22	1.9	21	90	5	64	68	2	4	24	1.22
6038489--6038554	30	2.3	29	84	5	80	30	6	16	46	1.71
6041752--6041789	19	2.0	20	94	5	69	13	7	21	57	1.60
6041903--6041935	15	2.1	16	88	5	50	9	15	0	75	1.03
6043362--6043400	19	2.0	20	85	5	53	71	0	25	2	0.98
6047020--6047064	21	2.1	21	92	8	74	33	11	6	48	1.65
6051733--6052216	165	2.9	162	82	4	549	37	21	19	21	1.94
6052421--6052461	21	2.0	20	95	4	73	24	4	4	65	1.32
6054807--6054855	2	24.0	2	95	4	89	48	2	0	48	1.12
6054929--6054977	2	24.5	2	91	8	82	48	2	0	48	1.12
6055864--6056046	92	2.0	92	92	0	303	26	18	19	36	1.94
6064716--6064760	22	2.1	21	91	4	72	24	20	24	31	1.98
6065031--6065102	37	1.9	37	100	0	144	22	37	11	29	1.88
6065033--6065111	37	2.1	37	93	4	133	24	37	10	27	1.87
6072669--6072697	13	2.1	14	93	6	51	20	3	0	75	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6072666--6072697	16	2.0	16	93	0	55	21	3	0	75	0.95
6089147--6089183	19	1.9	19	94	0	65	29	35	13	21	1.92
6099778--6099863	37	2.3	38	95	4	165	22	11	17	48	1.79
6100721--6100751	2	15.5	2	100	0	62	48	0	0	51	1.00
6100802--6100832	2	15.5	2	100	0	62	48	0	0	51	1.00
6110426--6110469	20	2.2	20	95	0	79	31	25	11	31	1.91
6111605--6111671	29	2.3	29	82	12	93	31	8	16	43	1.79
6117090--6117128	18	2.2	18	85	0	51	33	2	12	51	1.54
6117831--6117968	51	2.7	51	89	2	197	44	18	8	28	1.80
6118008--6118084	36	2.1	38	85	4	104	41	16	10	31	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59