genome.fa.s10.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  29  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10657352--10657376	13	1.9	13	100	0	50	48	0	0	52	1.00
10658530--10658596	30	2.3	30	87	5	93	49	19	2	28	1.63
10665007--10665106	36	2.8	36	89	1	148	17	18	40	25	1.91
10665351--10665516	74	2.2	74	79	3	181	22	19	25	32	1.97
10669232--10669273	16	2.6	16	84	0	57	16	2	11	69	1.29
10670385--10670550	79	2.1	79	83	6	203	30	10	24	34	1.88
10671646--10671848	36	5.8	35	83	4	212	18	21	22	37	1.94
10687750--10687796	21	2.2	21	88	7	69	36	21	17	25	1.94
10691337--10691371	16	2.2	16	89	0	52	48	8	2	40	1.49
10695115--10695156	15	2.8	15	82	13	59	57	19	2	21	1.52
10696397--10696459	27	2.3	27	100	0	126	30	23	11	34	1.90
10698248--10698286	19	2.1	18	90	4	60	20	0	2	76	0.90
10699653--10699690	3	12.7	3	88	0	58	36	2	26	34	1.71
10706517--10706635	57	2.1	57	92	3	195	37	17	9	35	1.82
10710293--10710355	14	4.5	14	89	0	90	36	0	23	39	1.55
10710293--10710355	28	2.2	28	91	5	101	36	0	23	39	1.55
10723182--10723290	53	2.1	53	100	0	218	36	11	9	43	1.72
10724769--10724865	31	3.2	28	78	16	81	34	4	3	58	1.32
10724797--10724856	31	1.9	32	93	3	104	33	3	3	60	1.30
10731449--10731473	6	4.2	6	100	0	50	16	36	0	48	1.46
10734597--10734756	62	2.6	62	85	0	212	35	18	20	25	1.96
10734969--10735101	36	3.7	36	77	4	117	27	36	10	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10736551--10736576	2	13.0	2	100	0	52	50	0	0	50	1.00
10736600--10736708	42	2.6	42	88	1	164	24	21	33	20	1.97
10738767--10738807	21	2.0	21	95	0	73	41	4	39	14	1.67
10739878--10739909	2	16.0	2	100	0	64	50	0	0	50	1.00
10742275--10742355	30	2.7	30	90	1	119	37	23	13	25	1.92
10746353--10746385	2	16.5	2	100	0	66	48	0	0	51	1.00
10749826--10749860	2	17.5	2	100	0	70	51	0	0	48	1.00
10754935--10754977	21	2.1	20	82	4	50	32	0	30	37	1.58
10759713--10759922	73	2.9	73	83	7	239	25	22	16	35	1.95
10763790--10763843	23	2.4	23	75	3	65	48	5	33	12	1.65
10767248--10767453	73	2.8	73	79	7	213	25	20	15	38	1.92
10769007--10769060	28	1.9	28	88	0	81	22	3	12	61	1.47
10775614--10775706	43	2.2	43	82	7	109	25	21	35	17	1.95
10776074--10776155	39	2.1	39	84	13	107	24	19	21	34	1.97
10780274--10780303	15	2.0	15	93	0	51	26	36	3	33	1.73
10785912--10785944	15	2.2	15	88	0	57	12	30	9	48	1.71
10789731--10789911	29	6.4	29	79	5	185	18	18	19	42	1.89
10815801--10815843	17	2.5	17	96	0	77	34	16	16	32	1.91
10817736--10817773	19	2.0	19	94	0	67	28	0	28	42	1.56
10821445--10821483	16	2.4	18	84	16	50	64	0	0	35	0.94
10821504--10821540	3	11.7	3	88	11	56	62	0	2	35	1.10
10822344--10822388	18	2.3	21	88	11	69	55	4	6	33	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10828644--10828689	20	2.3	20	96	0	83	32	4	21	41	1.73
10834797--10834840	22	2.0	22	86	0	61	36	6	13	43	1.71
10840233--10840278	20	2.3	20	88	7	67	32	4	17	45	1.68
10840323--10840375	28	1.9	27	88	3	79	30	18	22	28	1.98
10840323--10840381	28	2.1	28	84	6	75	30	20	23	25	1.98
10842424--10842467	24	1.9	22	82	17	54	43	9	2	45	1.48
10851180--10851231	21	2.5	21	80	0	68	32	17	11	38	1.85
10853927--10853966	20	2.0	20	95	0	71	15	37	10	37	1.80
10854043--10854109	2	33.5	2	93	0	116	1	46	0	52	1.09
10854034--10854109	10	7.4	11	87	11	92	2	44	0	52	1.14
10861483--10861521	21	1.9	21	84	5	53	20	25	5	48	1.70
10862255--10862323	31	2.2	32	84	2	86	44	1	5	47	1.35
10869678--10869724	17	2.8	17	80	6	51	31	0	0	68	0.90
10870353--10870384	16	2.0	16	100	0	64	31	0	0	68	0.90
10870448--10870493	23	2.0	24	86	4	67	32	8	2	56	1.42
10875710--10875893	73	2.5	72	74	9	176	28	22	22	26	1.99
10881587--10881617	2	15.5	2	100	0	62	51	0	0	48	1.00
10881652--10881738	43	2.0	43	88	0	129	25	29	17	27	1.97
10887629--10887832	64	3.2	64	92	0	329	25	30	14	29	1.95
10893914--10894006	43	2.2	43	90	0	141	25	15	33	25	1.95
10901325--10901417	43	2.2	43	94	0	159	23	15	35	25	1.94
10902381--10902502	33	3.8	32	75	14	117	10	48	6	34	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10902577--10902659	37	2.2	38	85	4	116	18	4	28	48	1.68
10905094--10905301	85	2.4	85	82	1	238	40	9	7	42	1.65
10906717--10906754	19	2.0	20	94	5	69	50	0	5	44	1.24
10907209--10907243	3	12.0	3	93	6	63	68	0	0	31	0.90
10923357--10923491	35	4.0	34	78	7	132	25	14	25	34	1.94
10923364--10923495	67	2.0	67	90	0	210	25	15	24	34	1.95
10923397--10923495	32	2.9	34	78	11	114	28	15	24	32	1.95
10923397--10923548	67	2.3	66	83	4	180	28	13	25	31	1.94
10924806--10924866	26	2.2	28	80	5	72	32	14	22	29	1.94
10925825--10925945	37	3.3	37	88	1	172	28	10	37	23	1.89
10926126--10926172	22	2.2	22	88	11	71	27	25	23	23	2.00
10938052--10938171	35	3.6	33	74	13	111	27	12	25	34	1.92
10938031--10938219	67	2.8	67	81	1	182	26	13	25	33	1.94
10940786--10940810	13	1.9	13	100	0	50	60	0	16	24	1.36
10943196--10943248	20	2.7	20	80	11	63	30	0	11	58	1.33
10946207--10946458	128	2.0	128	95	0	459	44	10	11	33	1.75
10946410--10946526	55	2.1	55	83	0	144	44	6	10	38	1.65
10947749--10947791	20	2.2	20	100	0	86	30	39	4	25	1.76
10957658--10957836	54	3.3	54	87	1	259	35	21	18	25	1.96
10958682--10959140	229	2.0	229	84	2	609	38	23	13	24	1.91
10959842--10959884	15	2.9	15	85	0	50	67	9	0	23	1.19
10959823--10959875	26	2.1	26	85	3	72	67	7	1	22	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10963282--10963434	81	1.9	81	84	2	209	28	15	23	32	1.95
10964621--10964921	54	5.6	54	78	3	257	34	18	18	27	1.95
10964621--10964920	108	2.8	109	81	3	338	35	19	19	27	1.95
10972080--10972108	15	2.0	15	93	6	51	55	6	6	31	1.53
10974078--10974248	43	3.9	43	78	9	159	23	32	16	26	1.96
10974080--10974248	86	1.9	87	85	3	232	24	32	16	26	1.96
10975065--10975104	20	2.0	20	95	0	71	37	10	37	15	1.80
10980858--10980896	18	2.2	17	86	4	51	41	10	10	38	1.73
10999752--10999924	28	6.0	28	80	7	166	41	8	12	37	1.74
10999752--10999913	58	2.8	57	82	4	191	39	8	12	39	1.74
10999752--10999924	29	6.0	28	78	9	152	41	8	12	37	1.74
11001245--11001373	31	4.2	31	87	1	161	17	30	29	23	1.97
11010489--11010610	42	2.9	42	92	2	201	22	22	32	22	1.98
11016096--11016196	2	50.5	2	85	9	136	47	0	3	47	1.20
11027188--11027296	30	3.7	29	74	9	105	39	10	11	39	1.74
11027185--11027295	59	1.9	59	83	9	147	40	9	11	37	1.75
11035315--11035352	10	3.9	10	83	16	53	68	0	0	31	0.90
11035318--11035362	18	2.6	17	86	6	63	71	0	2	26	0.98
11035321--11035362	17	2.4	17	92	4	66	73	0	2	23	0.94
11048233--11048351	57	2.1	57	95	3	213	26	13	20	39	1.89
11056614--11056779	77	2.2	77	88	0	251	37	6	13	41	1.71
11061539--11061563	13	1.9	13	100	0	50	48	8	0	44	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11064793--11064825	2	16.5	2	93	0	57	48	0	3	48	1.17
11065082--11065111	2	15.0	2	92	0	51	46	0	3	50	1.18
11065581--11065617	19	1.9	19	94	0	65	29	29	21	18	1.97
11067273--11067340	22	3.0	22	79	8	73	29	5	22	42	1.77
11067396--11067441	5	9.2	5	87	0	65	39	2	21	36	1.66
11069083--11069124	22	1.9	23	90	9	70	76	0	2	21	0.90
11069083--11069124	4	9.8	4	90	10	57	76	0	2	21	0.90
11069082--11069124	9	4.9	9	86	11	54	76	0	2	20	0.89
11069324--11069352	14	2.0	15	93	6	51	31	13	27	27	1.94
11075596--11075655	12	4.8	13	76	12	54	71	1	26	0	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59