genome.fa.s10.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  47  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17000730--17000823	14	6.8	13	71	23	61	27	3	0	69	1.04
17000731--17000774	4	10.2	4	81	13	52	29	2	0	68	1.02
17000742--17000811	13	6.2	12	71	25	55	27	2	0	70	1.02
17001031--17001093	13	4.3	15	73	16	53	19	6	0	74	1.02
17001039--17001093	13	4.0	13	76	19	58	20	3	0	76	0.94
17001031--17001093	29	2.2	29	85	5	83	19	6	0	74	1.02
17001561--17001644	33	2.5	33	80	3	89	11	48	9	29	1.71
17002009--17002052	17	2.6	16	92	7	70	18	0	0	81	0.68
17001999--17002064	24	2.6	26	90	7	100	19	0	0	80	0.72
17005104--17005163	27	2.2	27	100	0	120	33	35	21	10	1.87
17006336--17006505	62	2.7	62	90	2	252	30	21	11	37	1.89
17008403--17008482	39	2.1	39	83	4	99	43	11	2	42	1.53
17008474--17008514	11	3.6	12	80	9	50	26	0	4	68	1.10
17008626--17009510	252	3.5	251	75	9	618	34	13	7	45	1.71
17013274--17013326	28	1.9	27	88	3	79	28	20	18	32	1.97
17013371--17013409	20	2.0	20	89	0	60	46	20	2	30	1.64
17031835--17031950	59	2.0	59	100	0	232	30	11	31	27	1.91
17034436--17034733	105	2.8	105	90	0	470	39	16	21	22	1.92
17035754--17035791	19	2.1	19	85	14	53	60	2	18	18	1.48
17043797--17043830	15	2.3	15	89	0	50	35	0	0	64	0.94
17051741--17051774	16	2.1	16	88	0	50	8	5	17	67	1.37
17054219--17054321	45	2.3	45	96	0	188	16	5	55	22	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17062197--17062268	27	2.7	26	81	10	83	41	2	4	51	1.35
17062309--17062345	15	2.4	16	83	16	51	67	0	0	32	0.91
17063139--17063169	14	2.2	14	94	0	53	22	12	16	48	1.80
17069366--17069605	73	3.3	73	89	0	345	28	36	13	20	1.91
17069467--17069579	34	3.2	34	69	16	102	30	35	12	21	1.90
17069440--17069571	39	3.6	38	69	15	105	28	36	14	20	1.92
17072891--17073030	63	2.2	63	89	0	208	37	22	12	27	1.91
17072947--17073012	22	2.7	25	79	15	84	39	19	13	27	1.89
17073285--17073388	38	2.7	38	86	0	145	26	18	32	22	1.97
17077560--17077594	2	17.5	2	100	0	70	48	0	0	51	1.00
17077645--17077701	2	29.0	2	86	10	82	49	3	0	47	1.18
17077647--17077715	33	2.2	33	81	5	79	50	7	0	42	1.30
17083788--17083868	42	1.9	42	92	0	135	20	20	34	23	1.97
17083924--17084175	82	3.1	81	88	2	360	23	16	37	22	1.93
17084220--17084282	3	22.0	3	73	20	55	28	3	38	30	1.73
17084225--17084307	20	3.6	23	78	18	100	24	3	40	31	1.72
17084224--17084282	29	2.2	26	82	14	66	27	3	38	30	1.73
17084399--17084434	18	2.0	18	100	0	72	22	5	33	38	1.77
17087463--17087546	42	2.0	42	92	0	141	21	20	33	25	1.97
17087599--17087850	82	3.1	82	94	0	432	21	17	39	21	1.92
17087899--17087960	26	2.4	26	91	0	97	25	3	38	32	1.72
17094047--17094080	14	2.3	15	90	5	52	26	11	23	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17094347--17094416	26	2.7	25	80	13	70	28	0	7	64	1.20
17094403--17094443	18	2.3	18	87	4	57	29	4	2	63	1.28
17104563--17104599	19	1.9	19	100	0	74	43	29	0	27	1.55
17116337--17116407	24	2.8	25	77	16	65	67	1	11	19	1.29
17116394--17116456	11	5.9	11	75	14	53	69	1	3	25	1.12
17122796--17122839	22	2.0	22	86	0	61	36	15	22	25	1.94
17123930--17123967	19	2.0	19	94	0	67	28	0	28	42	1.56
17124041--17124095	29	1.9	28	85	3	74	41	3	20	34	1.69
17130080--17130115	2	18.0	2	91	0	54	44	0	2	52	1.15
17131692--17131732	20	2.0	22	90	9	68	34	0	2	63	1.08
17134482--17134522	13	3.3	12	84	15	57	82	0	0	17	0.66
17139617--17140097	118	4.1	118	83	4	549	29	26	21	22	1.99
17139617--17140097	237	2.0	235	85	3	635	29	26	21	22	1.99
17143627--17143737	31	3.5	31	90	2	177	38	19	18	22	1.93
17144084--17144207	63	2.0	63	83	3	160	31	11	33	23	1.90
17157271--17157440	76	2.2	76	90	4	279	33	6	11	48	1.65
17158196--17158297	52	2.0	50	83	10	129	37	10	3	48	1.57
17165741--17165932	37	5.2	37	67	10	115	28	15	21	34	1.94
17165729--17165969	74	3.3	74	81	2	252	28	14	21	34	1.93
17165774--17165944	73	2.3	73	83	5	193	26	15	23	33	1.95
17170743--17170804	23	2.6	24	69	19	58	3	29	1	66	1.17
17182719--17183033	159	2.0	159	98	0	612	45	9	7	36	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17191398--17191568	38	4.5	39	80	15	205	24	9	26	39	1.87
17191398--17191612	77	2.8	77	84	6	251	25	10	25	38	1.88
17191400--17191626	115	2.0	115	79	8	248	25	11	25	37	1.89
17191467--17191636	77	2.2	77	82	2	207	27	12	24	35	1.91
17195240--17195397	74	2.2	73	81	1	190	30	13	18	37	1.89
17195242--17195349	37	2.9	37	74	9	103	28	12	19	38	1.89
17195341--17195409	36	1.9	36	85	5	95	33	13	18	34	1.90
17195519--17195616	37	2.6	37	77	3	99	30	18	15	35	1.92
17195614--17195854	74	3.3	73	82	4	254	29	13	21	35	1.92
17196611--17196641	15	2.0	16	93	6	55	51	0	12	35	1.40
17201217--17201259	19	2.3	19	92	4	70	44	2	0	53	1.13
17209368--17209425	28	2.1	28	84	9	75	24	20	22	32	1.98
17209479--17209516	20	1.9	20	94	0	67	44	18	5	31	1.72
17211720--17211745	11	2.4	11	100	0	52	26	7	26	38	1.83
17214443--17214467	1	25.0	1	100	0	50	0	0	100	0	0.00
17214507--17214821	159	2.0	159	98	0	612	45	9	7	36	1.66
17222406--17222649	38	6.4	38	74	14	207	26	10	25	38	1.88
17222444--17222649	77	2.7	76	87	3	290	26	10	25	38	1.87
17222405--17222621	115	1.9	116	87	4	323	25	9	26	37	1.87
17229096--17229133	19	2.0	19	94	0	67	26	0	28	44	1.54
17237110--17237207	37	2.6	37	81	0	115	30	17	15	36	1.91
17237217--17237408	37	5.2	36	70	10	129	27	15	21	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17237205--17237445	74	3.3	74	82	2	270	28	14	21	35	1.92
17237232--17237445	73	2.9	73	81	4	216	29	13	21	35	1.92
17238201--17238231	15	2.0	16	93	6	55	51	0	12	35	1.40
17238230--17238256	14	1.9	14	100	0	54	33	7	0	59	1.25
17240339--17240365	13	2.1	13	100	0	54	29	25	14	29	1.95
17241894--17242182	143	2.0	143	93	1	499	43	14	8	32	1.77
17242305--17242360	21	2.6	22	75	11	62	3	28	1	66	1.19
17246312--17246782	159	3.0	159	98	0	906	45	9	8	36	1.68
17252462--17252531	35	2.0	35	100	0	140	45	2	14	37	1.59
17254691--17254899	38	5.4	38	75	17	216	23	8	27	40	1.84
17254729--17254936	39	5.4	39	74	17	200	23	8	28	38	1.84
17254690--17254942	38	6.6	37	73	20	191	24	8	28	38	1.85
17254690--17254937	77	3.2	77	94	0	433	23	8	28	39	1.85
17254690--17254974	154	1.9	154	86	1	410	26	9	26	37	1.87
17257968--17258049	39	2.1	39	97	0	155	6	45	14	34	1.70
17268598--17268647	25	2.0	25	100	0	100	56	12	12	20	1.67
17268961--17268994	16	2.2	15	89	5	50	32	0	0	67	0.91
17289603--17289642	19	2.1	19	85	4	53	32	20	15	32	1.93
17291148--17292412	251	5.0	250	79	7	1211	34	13	6	45	1.69
17293474--17293611	72	1.9	72	87	0	204	32	25	26	15	1.96
17294750--17294801	14	3.7	14	82	7	61	71	0	1	26	0.97
17295584--17295622	16	2.3	17	86	8	53	41	10	5	43	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17307609--17307897	37	7.7	37	86	4	366	20	16	18	43	1.88
17307609--17307894	73	3.8	74	86	5	369	20	17	18	43	1.89
17308116--17308262	72	2.0	72	86	0	204	30	25	27	16	1.97
17309294--17309324	16	1.9	16	93	0	53	64	0	3	32	1.09
17309407--17309459	27	2.0	26	85	10	72	69	0	3	26	1.05
17309405--17309459	13	4.2	12	82	15	65	69	0	3	27	1.05
17309825--17309878	18	3.0	19	84	7	69	72	1	0	25	0.95
17312492--17312578	27	3.2	27	95	0	156	12	21	33	32	1.91
17331340--17331405	34	1.9	34	90	0	105	40	16	7	34	1.77
17333201--17333239	15	2.6	15	83	0	51	10	38	17	33	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59