genome.fa.s10.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  53  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19237147--19237176	16	1.9	15	93	6	51	86	0	6	6	0.70
19239284--19239383	44	2.3	43	81	13	116	30	27	8	35	1.85
19239284--19239361	22	3.6	22	86	5	97	29	26	8	34	1.87
19239573--19239618	21	2.2	20	84	3	56	34	30	8	26	1.86
19242768--19242815	14	3.6	13	83	10	62	35	8	16	39	1.79
19244325--19244361	8	4.8	8	83	16	51	64	0	0	35	0.94
19247468--19247495	9	3.1	9	100	0	56	32	0	0	67	0.91
19250344--19250381	2	19.0	2	100	0	76	50	0	50	0	1.00
19256365--19256421	27	2.1	26	81	12	62	28	3	5	63	1.33
19258401--19258438	18	2.0	20	85	10	53	47	2	0	50	1.15
19261869--19261916	20	2.3	20	80	13	53	14	6	0	79	0.92
19283887--19283917	2	15.5	2	100	0	62	48	0	0	51	1.00
19287739--19287779	15	2.7	15	88	7	57	39	7	19	34	1.80
19290977--19291016	12	3.5	11	86	10	53	82	12	0	5	0.82
19291291--19291345	11	4.8	12	76	13	53	61	0	38	0	0.96
19291291--19291345	23	2.4	22	79	14	58	61	0	38	0	0.96
19291541--19291570	14	2.1	15	93	6	53	80	20	0	0	0.72
19291902--19291926	10	2.5	10	100	0	50	72	0	0	28	0.86
19292039--19292085	24	2.0	24	95	0	85	21	14	17	46	1.83
19293265--19293290	2	13.0	2	100	0	52	0	0	50	50	1.00
19294001--19294032	6	5.3	6	96	0	55	34	15	31	18	1.93
19294002--19294057	18	3.1	19	87	5	71	42	14	30	12	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19294760--19294786	14	1.9	14	100	0	54	33	14	7	44	1.73
19315414--19315470	28	2.0	28	89	3	87	43	0	8	47	1.34
19320509--19320991	242	2.0	242	86	1	664	28	15	19	36	1.93
19320946--19321026	39	2.0	40	83	2	101	17	22	20	39	1.92
19327302--19327345	22	2.0	23	86	4	63	31	2	2	63	1.19
19331080--19331115	2	18.0	2	100	0	72	50	0	0	50	1.00
19333270--19333518	22	11.5	21	78	8	214	52	15	10	20	1.73
19333270--19333520	43	5.8	43	76	12	221	52	15	10	21	1.72
19333270--19333518	64	3.8	64	89	7	353	52	15	10	20	1.73
19352418--19352461	22	2.0	23	86	4	63	31	0	2	65	1.05
19353765--19353803	20	2.0	20	84	0	51	28	10	17	43	1.82
19357243--19357321	17	4.6	17	71	22	58	75	1	21	1	0.94
19357248--19357309	19	3.2	19	71	11	54	72	1	24	1	1.02
19358956--19358990	18	2.0	18	88	5	54	45	0	0	54	0.99
19359789--19360122	22	15.4	22	74	7	270	50	16	11	21	1.77
19359860--19360113	66	3.9	66	92	2	406	48	18	11	21	1.80
19361592--19361640	24	2.0	24	84	7	64	73	6	8	12	1.24
19362269--19362325	17	3.1	18	70	9	53	56	1	0	42	1.10
19363136--19363207	20	3.8	20	76	14	80	52	1	0	45	1.09
19384616--19384691	2	43.0	2	73	23	73	52	0	1	46	1.08
19384463--19384629	93	1.8	93	94	2	302	34	19	5	41	1.74
19384616--19384683	15	4.9	14	83	13	88	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19384617--19384684	17	4.2	16	80	19	88	54	0	0	45	0.99
19384615--19384691	30	2.7	28	82	15	95	51	0	1	46	1.09
19384616--19384691	13	5.4	15	81	13	83	52	0	1	46	1.08
19384839--19385022	22	8.5	22	76	10	173	54	11	10	23	1.67
19384856--19385006	41	3.5	41	81	16	166	52	11	10	24	1.69
19391816--19391855	19	2.2	18	83	16	55	17	22	0	60	1.37
19392671--19393048	82	4.6	82	87	1	492	37	15	19	27	1.92
19393178--19393253	22	3.5	22	85	1	109	57	11	7	22	1.59
19394428--19394599	49	3.5	49	95	1	290	24	25	19	30	1.98
19394630--19394682	23	2.3	23	93	0	88	16	26	20	35	1.94
19394719--19394785	18	3.8	18	80	2	66	26	28	10	34	1.90
19395030--19395275	81	3.1	81	86	3	331	40	8	10	40	1.69
19395605--19395711	28	3.6	28	78	11	124	44	5	15	33	1.70
19395596--19395711	61	1.9	61	90	0	187	43	6	15	34	1.71
19396149--19396355	36	5.5	36	75	12	193	22	19	20	37	1.95
19396174--19396364	40	5.0	40	73	11	175	24	19	19	37	1.94
19396152--19396364	76	2.8	75	89	4	311	23	19	18	37	1.94
19399824--19399862	2	19.5	2	100	0	78	48	0	0	51	1.00
19407080--19407398	49	6.5	49	91	0	485	24	25	18	31	1.97
19407404--19407527	23	5.3	23	91	1	158	19	26	18	35	1.95
19407568--19407630	18	3.6	18	81	10	76	23	30	12	33	1.92
19407875--19408102	81	2.8	81	90	2	354	41	7	10	40	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19408518--19408673	81	1.9	82	89	3	244	36	13	17	32	1.89
19408815--19408968	82	1.9	82	91	0	254	37	13	20	29	1.91
19417152--19417198	22	2.2	21	81	7	58	53	12	8	25	1.67
19417157--19417265	22	5.0	22	79	4	112	55	13	7	22	1.63
19417179--19417263	44	1.9	45	90	2	136	57	15	5	21	1.59
19417785--19418095	82	3.9	82	83	6	395	39	17	16	27	1.91
19417903--19418052	74	2.0	74	90	0	237	39	17	14	28	1.89
19418076--19418109	14	2.4	14	95	0	59	32	26	23	17	1.97
19421643--19421718	22	3.5	22	85	1	109	57	11	7	22	1.59
19425599--19425777	82	2.2	82	89	0	286	36	13	18	31	1.90
19444589--19444761	82	2.1	82	82	4	206	32	15	20	32	1.93
19444789--19444953	82	2.0	82	93	0	285	35	13	21	30	1.91
19457374--19457638	133	2.0	132	100	0	521	34	21	9	33	1.85
19461717--19461770	28	1.9	28	92	0	90	20	3	11	64	1.40
19467116--19467294	82	2.2	82	89	0	286	36	13	18	31	1.90
19468063--19468106	2	22.0	2	81	9	54	43	0	2	54	1.12
19469292--19469448	82	1.9	82	94	0	278	35	15	17	30	1.92
19469350--19469565	117	1.8	117	86	0	315	36	15	17	31	1.91
19469467--19469631	82	2.0	82	87	0	240	35	15	21	27	1.94
19470450--19470665	117	1.8	117	83	3	283	36	15	16	31	1.90
19470567--19470731	82	2.0	82	90	0	258	36	15	19	28	1.93
19473771--19473824	27	2.0	28	85	3	74	18	12	16	51	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19474823--19474854	15	2.1	15	94	0	55	18	0	21	59	1.38
19474833--19474908	27	2.8	26	80	5	89	21	2	14	61	1.44
19474833--19474889	26	2.2	26	90	3	87	19	1	15	63	1.40
19475998--19476031	8	4.2	8	84	0	50	58	0	41	0	0.98
19477380--19477482	22	4.7	22	81	4	118	54	13	7	24	1.65
19477396--19477481	44	1.9	45	90	2	138	56	13	5	23	1.59
19478002--19478293	82	3.6	82	89	0	440	38	16	17	27	1.92
19479157--19479186	10	3.1	10	95	4	53	26	0	0	73	0.84
19479147--19479204	24	2.4	24	77	13	66	22	3	0	74	0.97
19479115--19479202	27	3.2	26	71	21	65	27	4	1	67	1.17
19484602--19484631	9	3.3	9	95	0	51	26	0	0	73	0.84
19484742--19484779	16	2.3	17	86	4	51	23	0	0	76	0.79
19484787--19485292	38	13.6	38	85	3	629	41	19	16	21	1.90
19484787--19485292	75	6.8	75	86	3	639	41	19	16	21	1.90
19488031--19488055	13	1.9	13	100	0	50	48	8	0	44	1.32
19500466--19500504	15	2.6	15	91	0	60	51	15	5	28	1.64
19500466--19500516	15	3.4	14	81	10	57	47	15	3	33	1.64
19501716--19502224	266	1.9	265	93	1	867	37	20	9	32	1.85
19502870--19502933	31	2.1	31	100	0	128	9	21	15	53	1.70
19511906--19511945	2	19.5	2	94	5	71	50	2	0	47	1.14
19513583--19513658	22	3.5	22	83	1	100	57	13	7	21	1.60
19517929--19518107	82	2.2	82	80	4	209	37	14	17	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19518589--19518624	18	1.9	19	94	5	65	11	16	19	52	1.73
19520006--19520043	18	2.1	18	100	0	76	23	21	5	50	1.69
19521573--19521772	22	9.2	21	72	12	102	53	16	11	19	1.72
19521599--19521648	21	2.4	21	83	6	66	64	16	6	14	1.48
19525878--19525932	26	2.1	26	83	12	69	54	0	0	45	0.99
19530871--19530931	26	2.3	26	88	2	86	31	8	6	54	1.56
19531156--19531187	15	2.1	16	94	5	57	6	15	0	78	0.95
19534265--19534290	13	2.0	13	100	0	52	46	0	7	46	1.31
19538590--19538642	28	1.9	28	85	11	74	24	24	24	26	2.00
19538689--19538725	19	1.9	19	100	0	74	43	29	0	27	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59