genome.fa.s10.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  11  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4098892--4098918	2	13.5	2	100	0	54	51	0	0	48	1.00
4099486--4099516	4	7.8	4	92	0	53	22	3	0	74	0.96
4100273--4100420	78	1.9	77	100	0	287	43	6	8	40	1.61
4100714--4100752	19	2.0	21	85	10	55	48	5	0	46	1.24
4100890--4100919	6	4.8	6	95	4	51	80	0	16	3	0.85
4102440--4102479	18	2.2	17	87	12	62	47	7	12	32	1.69
4102446--4102481	18	2.0	18	100	0	72	50	5	11	33	1.61
4103668--4103728	30	2.0	30	83	0	77	31	1	8	59	1.37
4105229--4105305	38	2.1	37	92	2	127	36	15	7	40	1.76
4112153--4112182	2	15.5	2	93	6	53	50	0	0	50	1.00
4112389--4112587	96	2.1	95	98	1	382	35	15	12	36	1.84
4140957--4140995	2	19.5	2	94	0	69	51	2	0	46	1.14
4151232--4151346	57	2.0	57	96	0	212	29	13	8	47	1.73
4157146--4157180	18	1.9	18	88	0	52	34	11	11	42	1.77
4161551--4161622	9	7.9	9	77	22	55	23	1	0	75	0.89
4161550--4161625	18	4.2	18	76	20	79	22	1	0	76	0.86
4161551--4161617	14	4.7	14	79	17	68	23	1	0	74	0.90
4161541--4161624	9	8.4	9	72	21	53	22	2	0	75	0.92
4161764--4161818	9	6.2	9	74	19	53	21	3	0	74	0.97
4161775--4161830	25	2.2	26	87	6	80	23	5	0	71	1.06
4162092--4162127	19	1.9	18	88	5	54	16	5	0	77	0.94
4165589--4165642	22	2.5	22	78	0	63	48	22	9	20	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4167164--4167299	60	2.2	62	85	5	179	30	7	16	44	1.75
4167398--4167487	22	4.1	22	85	0	90	24	10	18	46	1.80
4167450--4167521	22	3.2	22	78	5	65	25	11	27	36	1.90
4167490--4167543	23	2.3	23	87	0	72	31	14	25	27	1.95
4167583--4167641	22	2.7	22	76	2	57	45	22	6	25	1.76
4167587--4167654	21	3.2	21	76	2	64	47	20	10	22	1.80
4168968--4169019	16	3.3	15	82	15	61	36	0	0	63	0.95
4168967--4169009	21	1.9	24	86	13	65	34	0	0	65	0.93
4170844--4170868	2	12.5	2	100	0	50	48	0	0	52	1.00
4174400--4174481	2	40.0	2	85	4	110	43	0	4	51	1.23
4174400--4174492	22	4.1	24	81	14	108	41	0	7	50	1.30
4174427--4174490	8	8.0	8	89	0	65	42	0	7	50	1.31
4176120--4176175	21	2.6	22	80	5	60	21	12	21	44	1.85
4176210--4176309	23	4.4	23	87	5	123	33	25	13	29	1.93
4176208--4176361	46	3.2	45	81	9	139	33	26	13	25	1.93
4176271--4176409	26	5.5	26	83	5	171	34	25	15	25	1.94
4176274--4176409	51	2.7	52	87	5	192	34	25	14	25	1.94
4176443--4176530	26	3.6	25	72	17	78	42	26	10	21	1.85
4176476--4176537	26	2.4	25	79	12	81	41	25	9	22	1.84
4176345--4176559	72	3.1	72	76	13	250	37	26	13	22	1.91
4176531--4176578	21	2.3	21	88	0	69	35	25	16	22	1.95
4180485--4180542	24	2.4	24	97	2	107	36	12	29	22	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4180509--4180747	125	1.9	125	87	3	347	24	15	21	38	1.92
4181423--4181454	10	3.1	10	95	4	55	68	0	0	31	0.90
4186958--4186998	21	2.0	21	85	0	55	7	19	2	70	1.22
4194432--4194465	11	2.9	12	86	4	52	67	0	2	29	1.05
4206969--4207008	19	2.1	19	100	0	80	30	0	45	25	1.54
4208575--4208674	50	2.0	50	96	0	182	46	28	3	23	1.67
4228351--4228380	14	2.1	14	93	0	51	26	16	10	46	1.78
4229431--4229471	21	2.0	21	90	0	64	43	7	26	21	1.79
4232363--4232403	20	2.0	20	95	0	73	24	0	41	34	1.55
4233253--4233315	25	2.5	25	84	5	83	50	12	19	17	1.77
4238001--4238042	18	2.3	19	80	12	52	28	19	19	33	1.96
4242126--4242166	20	2.0	20	90	9	66	24	0	39	36	1.56
4244522--4244584	25	2.5	25	84	5	83	17	19	12	50	1.77
4244590--4244648	6	9.7	6	74	15	50	1	16	3	77	0.98
4244824--4244900	34	2.3	34	84	8	95	33	24	7	33	1.84
4245001--4245054	23	2.4	22	75	22	58	48	27	5	18	1.70
4245372--4245409	20	1.9	20	94	0	67	34	39	0	26	1.57
4246583--4246607	13	1.9	13	100	0	50	48	0	0	52	1.00
4269622--4269650	10	2.7	11	94	5	51	20	0	20	58	1.39
4273994--4274026	11	3.1	11	91	8	59	27	0	15	57	1.38
4273994--4274029	10	3.5	10	85	7	54	27	0	16	55	1.42
4281901--4281937	10	3.5	11	82	10	51	24	0	21	54	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4284729--4284774	20	2.3	20	96	0	83	45	21	4	28	1.71
4287963--4287994	16	2.1	16	94	5	57	34	0	0	65	0.93
4288107--4288183	25	3.2	25	80	10	97	40	1	0	58	1.06
4288135--4288186	22	2.6	19	78	18	61	40	1	0	57	1.10
4288421--4288523	27	4.0	27	67	17	83	45	0	4	48	1.30
4288445--4288543	51	2.0	50	84	9	130	44	1	4	50	1.27
4293614--4293689	2	37.5	2	87	7	100	48	2	1	46	1.24
4296328--4296650	129	2.5	127	78	5	297	28	25	12	34	1.92
4297672--4297701	14	2.1	14	93	0	51	26	16	10	46	1.78
4300814--4300845	2	16.5	2	93	6	57	50	0	0	50	1.00
4312901--4312927	6	4.5	6	100	0	54	0	14	18	66	1.25
4328315--4328345	6	5.2	6	92	0	53	0	19	12	67	1.22
4331179--4331208	14	2.1	14	93	0	51	30	20	6	43	1.77
4337752--4337829	37	2.1	39	85	4	106	48	1	8	41	1.43
4340510--4340564	23	2.4	23	82	8	60	52	0	0	47	1.00
4359726--4359897	22	7.7	22	70	15	95	44	5	1	48	1.35
4359768--4359897	23	5.7	23	71	16	85	43	3	2	50	1.30
4360448--4360491	18	2.3	20	84	7	56	59	2	11	27	1.44
4361378--4361442	31	2.1	31	82	5	78	43	1	0	55	1.09
4371626--4371684	29	2.0	29	100	0	118	35	10	10	44	1.72
4392631--4392878	125	2.0	125	97	0	469	31	14	17	36	1.90
4394187--4394261	36	2.1	37	84	2	98	24	5	17	53	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4394756--4394870	57	2.0	57	94	0	203	17	17	18	46	1.84
4397692--4397755	31	2.1	31	96	0	119	43	18	9	28	1.81
4404017--4404049	16	2.1	16	88	11	50	24	0	3	72	0.98
4405916--4405947	2	16.0	2	100	0	64	50	0	50	0	1.00
4406217--4406250	2	17.0	2	100	0	68	50	0	50	0	1.00
4407151--4407215	21	3.1	21	77	0	76	27	7	16	47	1.74
4407303--4407409	44	2.5	44	86	4	148	30	4	13	51	1.61
4407439--4407499	22	2.9	22	72	20	58	32	6	13	47	1.68
4407487--4407531	21	2.1	21	84	8	56	35	8	8	46	1.66
4422752--4422838	35	2.5	35	86	3	113	32	16	31	20	1.94
4449101--4449183	38	2.2	39	97	2	159	27	16	31	24	1.97
4465183--4465211	2	14.5	2	100	0	58	51	0	0	48	1.00
4468635--4468689	26	2.1	27	83	6	69	27	16	0	56	1.40
4476198--4476252	7	7.7	7	80	10	58	21	1	0	76	0.88
4476202--4476252	11	4.5	11	78	9	50	21	1	0	76	0.88
4476421--4476502	33	2.6	31	79	9	85	21	7	0	70	1.11
4476842--4476880	13	3.1	13	85	3	53	5	15	0	79	0.90
4476906--4476999	22	4.2	21	74	12	71	2	31	0	65	1.04
4477450--4477493	13	3.4	13	81	12	54	20	0	2	77	0.88
4477450--4477493	20	2.3	19	88	11	63	20	0	2	77	0.88
4477437--4477484	23	2.2	21	88	7	69	18	0	2	79	0.84
4477437--4477490	11	4.9	11	76	14	58	18	0	1	79	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4479695--4479865	57	3.0	57	88	0	252	43	9	20	25	1.82
4480669--4480707	20	2.0	20	85	14	55	7	10	10	71	1.30
4485139--4485250	58	1.9	57	87	1	161	42	9	21	25	1.83
4490600--4490633	17	2.0	17	100	0	68	35	11	17	35	1.87
4491037--4491074	19	2.0	20	89	5	60	68	5	26	0	1.11
4495174--4495224	11	4.8	11	72	18	54	74	5	13	5	1.19
4495159--4495224	31	2.1	31	97	0	123	74	4	15	6	1.18
4495187--4495230	20	2.2	20	88	4	63	72	6	15	4	1.22
4496832--4496865	8	4.2	8	92	0	59	47	14	2	35	1.60
4496832--4496875	12	3.7	12	78	0	52	45	13	4	36	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59