genome.fa.s10.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  46  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16662473--16662531	27	2.2	26	85	5	82	33	10	8	47	1.68
16662482--16662537	27	2.1	27	96	0	103	28	8	7	55	1.57
16663858--16663891	2	17.5	2	87	6	52	50	0	2	47	1.16
16663866--16663892	13	2.1	13	100	0	54	55	0	0	44	0.99
16666772--16666831	30	2.1	29	81	6	68	31	8	21	38	1.83
16672745--16672793	15	3.3	14	77	11	53	44	6	34	14	1.70
16672737--16672804	30	2.3	30	92	0	109	50	4	32	13	1.61
16685351--16685438	29	3.0	29	100	0	176	25	3	20	51	1.63
16688561--16689666	254	4.4	254	83	5	1224	35	8	6	49	1.59
16690065--16690151	30	2.9	30	92	0	147	36	17	13	32	1.89
16697029--16697158	47	2.8	47	89	0	188	40	16	8	34	1.78
16701388--16701423	2	18.0	2	100	0	72	50	0	0	50	1.00
16703459--16703547	2	45.0	2	80	6	92	50	5	0	42	1.26
16704157--16704204	22	2.2	22	88	3	71	60	0	0	39	0.97
16704158--16704201	18	2.4	19	80	3	54	61	0	0	38	0.96
16704728--16704788	2	30.0	2	88	3	86	1	44	4	49	1.33
16709670--16709741	19	3.8	19	72	9	58	55	2	4	37	1.34
16709678--16709749	37	1.9	37	86	5	101	58	2	4	34	1.32
16715984--16716546	281	2.0	281	91	0	919	27	11	18	41	1.86
16727357--16727391	5	7.2	5	87	6	54	80	0	17	2	0.84
16727356--16727411	24	2.2	24	87	12	78	76	0	16	7	0.99
16734461--16734774	162	2.0	159	98	1	601	51	5	13	28	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16737256--16737299	17	2.6	17	85	0	61	72	0	2	25	0.96
16748610--16748651	20	2.0	21	86	4	59	21	4	21	52	1.65
16748822--16748916	21	4.5	21	86	0	136	18	16	28	35	1.93
16748905--16748969	26	2.5	26	79	0	67	27	10	18	43	1.83
16748957--16749014	23	2.5	23	91	0	98	25	8	29	36	1.86
16749026--16749105	22	3.7	22	81	3	81	46	25	10	18	1.80
16750506--16750567	21	2.9	22	80	9	74	20	12	24	41	1.87
16750546--16750615	26	2.7	26	90	0	113	28	12	21	37	1.90
16750668--16750727	21	2.8	22	84	5	86	46	26	10	16	1.78
16750668--16750735	21	3.2	22	81	6	68	47	23	11	17	1.81
16758356--16758504	74	2.0	74	96	2	273	39	7	20	31	1.80
16762270--16762363	46	2.0	47	89	4	145	41	20	11	26	1.86
16762864--16762919	28	2.0	28	96	0	103	37	25	7	30	1.82
16765794--16765832	21	2.0	21	90	10	64	28	0	0	71	0.86
16787541--16787587	22	2.1	23	84	4	60	31	0	0	68	0.90
16788419--16788534	27	4.3	27	83	1	124	41	6	7	43	1.60
16788418--16788577	54	2.9	54	78	3	169	42	8	8	40	1.67
16788443--16788587	28	5.4	26	75	7	67	42	10	7	39	1.67
16793075--16793118	3	14.7	3	100	0	88	31	0	0	68	0.90
16795350--16795457	35	3.1	35	90	0	162	26	11	32	29	1.91
16802506--16802537	16	1.9	16	93	6	55	81	0	18	0	0.70
16802499--16802537	13	2.8	13	88	7	51	76	0	23	0	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16802613--16802661	16	3.0	17	82	11	59	63	4	32	0	1.13
16802609--16802659	12	4.1	12	82	5	57	64	3	31	0	1.11
16802727--16802862	70	2.0	67	84	12	179	58	3	35	2	1.28
16802819--16802887	31	2.2	31	84	5	86	52	7	36	4	1.49
16803637--16803912	60	4.6	60	85	1	333	26	15	29	27	1.96
16803616--16803912	120	2.5	120	85	1	382	27	16	29	26	1.97
16813518--16813552	6	6.0	6	86	6	54	34	2	17	45	1.63
16813960--16813992	17	1.9	17	100	0	66	27	18	18	36	1.94
16814947--16815193	131	1.9	132	90	3	399	42	6	4	46	1.50
16821478--16821530	27	2.0	27	88	0	79	58	3	0	37	1.16
16828342--16828522	61	3.0	60	85	6	240	22	29	19	28	1.98
16828342--16828523	60	3.0	61	86	3	251	22	29	19	28	1.98
16829241--16829279	16	2.5	16	83	4	53	0	20	0	79	0.73
16829313--16829457	77	1.9	77	85	2	202	6	37	5	49	1.53
16829313--16829478	77	2.2	77	83	2	199	6	36	4	53	1.47
16833180--16833217	3	12.7	3	88	0	58	34	26	0	39	1.57
16834639--16834676	13	2.9	13	88	0	58	78	2	0	18	0.86
16834707--16834750	8	5.6	8	89	2	54	25	0	45	29	1.54
16834695--16834750	24	2.4	23	85	5	76	28	1	41	28	1.66
16834781--16834888	52	2.1	51	93	3	182	38	14	25	20	1.91
16836653--16836716	21	3.0	21	86	2	83	26	18	15	39	1.91
16844410--16844593	61	3.0	60	83	9	239	23	33	17	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16844410--16844590	60	3.0	59	85	7	222	23	33	18	24	1.96
16845314--16845347	13	2.5	14	85	9	52	0	17	0	82	0.67
16845435--16845475	16	2.5	17	84	11	59	0	29	0	70	0.87
16845435--16845475	7	6.3	7	78	16	52	0	29	0	70	0.87
16845381--16845543	77	2.1	76	83	5	195	3	38	3	54	1.34
16855723--16855829	2	54.0	2	90	1	153	50	5	0	43	1.25
16855930--16855970	20	2.0	20	100	0	82	29	17	0	53	1.44
16857584--16857641	30	1.9	30	92	0	98	46	5	13	34	1.66
16858575--16858624	2	25.0	2	100	0	100	50	0	0	50	1.00
16861499--16861523	12	2.1	12	100	0	50	36	32	0	32	1.58
16863457--16863489	2	17.0	2	93	6	59	51	0	0	48	1.00
16871797--16871825	2	14.5	2	100	0	58	48	0	0	51	1.00
16872936--16872972	5	7.6	5	82	17	51	21	0	0	78	0.75
16872928--16872965	15	2.4	16	91	4	60	21	2	0	76	0.91
16873279--16873332	2	27.0	2	100	0	108	50	0	0	50	1.00
16885935--16885983	2	24.5	2	100	0	98	51	0	0	48	1.00
16886114--16886215	51	2.0	51	88	0	150	21	11	24	42	1.86
16888075--16888119	2	22.5	2	100	0	90	48	0	0	51	1.00
16889298--16889349	27	2.0	26	85	14	72	51	3	0	44	1.19
16889923--16889968	19	2.3	20	78	14	60	41	0	6	52	1.27
16897198--16897250	19	2.5	22	82	17	76	69	5	0	24	1.09
16902246--16903079	31	27.2	31	70	13	521	35	18	18	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16902261--16903095	62	13.6	62	88	3	1158	35	18	19	27	1.95
16903149--16903192	21	2.1	21	95	0	79	29	29	11	29	1.92
16903106--16903328	122	1.8	122	84	1	304	29	22	15	33	1.94
16903275--16903345	21	3.4	21	84	3	90	28	32	14	25	1.94
16903479--16903531	19	2.5	22	79	17	67	67	5	0	26	1.12
16905047--16905088	15	2.7	16	75	17	52	76	0	0	23	0.79
16907243--16907280	15	2.5	15	95	4	67	39	28	23	7	1.83
16908006--16908467	154	3.0	154	94	1	813	40	10	15	33	1.82
16908515--16908547	17	1.9	17	93	0	57	57	3	3	36	1.29
16909380--16909421	13	3.2	13	80	6	50	2	16	0	80	0.81
16917006--16917037	13	2.5	13	94	0	55	34	0	0	65	0.93
16918595--16918638	23	1.9	23	90	0	70	25	11	27	36	1.90
16919908--16919967	30	2.0	30	90	6	95	28	11	21	38	1.89
16922282--16922478	103	1.9	103	84	2	261	30	23	35	9	1.87
16923462--16923491	15	2.0	15	93	0	51	83	0	0	16	0.65
16923548--16923603	13	4.4	13	73	17	55	73	0	1	25	0.93
16923548--16923591	23	1.9	24	90	9	74	75	0	0	25	0.81
16923551--16923604	15	3.7	15	82	7	58	72	0	1	25	0.95
16933941--16934037	48	2.0	48	93	0	167	26	21	15	36	1.93
16935157--16935187	15	2.1	15	93	0	53	48	0	6	45	1.28
16935183--16935236	28	2.0	26	82	13	65	42	1	5	50	1.36
16941044--16941103	27	2.2	26	85	8	75	45	10	8	36	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16941685--16941723	19	2.1	19	90	0	60	53	17	12	15	1.72
16953106--16953157	19	2.8	18	85	8	68	75	0	0	25	0.81
16953103--16953161	9	6.2	10	78	4	52	76	0	0	23	0.79
16954156--16954256	7	13.4	7	74	15	78	74	0	3	21	0.98
16954167--16954233	24	2.8	23	78	12	57	74	0	5	19	1.02
16954156--16954251	29	3.2	29	77	11	95	75	0	4	20	0.97
16981303--16981348	21	2.2	21	84	7	58	8	50	2	39	1.46
16985546--16985592	19	2.3	22	89	10	73	34	12	21	31	1.91
16986731--16986863	63	2.1	62	94	1	230	48	7	6	37	1.58
16990911--16990964	2	27.0	2	92	7	92	1	48	0	50	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59