genome.fa.s10.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  43  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15425823--15425849	2	13.5	2	100	0	54	0	48	0	51	1.00
15442019--15442058	19	2.0	20	90	4	64	42	25	0	32	1.55
15444006--15444040	18	1.9	18	100	0	70	45	0	14	40	1.45
15444231--15444260	4	7.5	4	100	0	60	26	0	0	73	0.84
15455377--15455427	15	3.4	15	84	10	61	29	3	17	49	1.65
15460943--15461002	22	2.8	21	80	12	68	53	3	3	40	1.34
15461039--15461131	42	2.2	42	84	3	116	49	1	4	45	1.29
15461192--15461216	11	2.3	11	100	0	50	60	0	0	40	0.97
15461237--15461352	42	2.7	42	90	1	196	52	2	3	41	1.32
15461039--15461489	241	1.9	234	86	5	638	52	2	2	42	1.27
15470480--15470521	22	1.9	22	85	0	57	64	0	0	35	0.94
15470775--15470822	15	3.1	15	82	14	62	56	0	2	41	1.11
15475431--15475457	6	4.5	6	100	0	54	18	18	29	33	1.95
15490729--15490831	51	2.0	51	100	0	206	36	24	21	17	1.94
15497343--15497392	24	2.1	23	85	3	64	48	0	0	52	1.00
15507490--15507541	10	5.0	10	81	13	61	48	19	3	28	1.66
15514423--15514485	23	2.7	23	80	2	63	42	3	3	50	1.34
15516671--15516767	21	4.6	21	89	0	104	30	38	15	15	1.89
15526562--15526595	15	2.3	15	89	0	50	29	0	8	61	1.26
15529739--15529763	13	1.9	13	100	0	50	48	8	0	44	1.32
15532543--15532573	15	2.1	15	100	0	62	61	6	0	32	1.21
15533929--15534038	27	4.0	28	82	4	118	29	13	16	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15533926--15534032	54	2.0	54	87	7	155	29	14	16	39	1.88
15533922--15534067	27	5.4	26	81	4	114	30	17	14	38	1.89
15533935--15534068	54	2.5	53	83	2	151	31	15	15	37	1.89
15533923--15534111	81	2.3	82	81	3	211	31	14	15	38	1.88
15534046--15534107	28	2.2	28	85	0	79	33	12	16	37	1.87
15534347--15534436	46	1.9	47	84	6	121	47	18	10	23	1.79
15535482--15535578	42	2.3	42	82	7	124	45	5	4	45	1.44
15535518--15535586	34	2.0	34	91	0	111	42	5	4	47	1.47
15535526--15535595	34	2.1	34	88	0	104	41	4	7	47	1.50
15545266--15545341	28	2.7	28	95	0	134	31	23	14	30	1.94
15560092--15560141	23	2.1	24	85	3	66	42	2	2	54	1.23
15560115--15560181	27	2.4	27	73	9	73	43	5	1	49	1.36
15560561--15560612	20	2.6	20	78	0	59	32	0	5	61	1.20
15564216--15564365	52	2.9	52	90	1	239	24	13	29	32	1.93
15567021--15567059	19	2.0	20	90	5	62	28	10	20	41	1.85
15569251--15569283	2	16.5	2	100	0	66	48	0	0	51	1.00
15589549--15589594	24	2.0	23	86	4	65	2	21	2	73	1.04
15589554--15589604	24	2.1	24	82	7	59	3	21	1	72	1.11
15590355--15590596	55	4.5	54	87	6	325	20	14	38	26	1.91
15599803--15599836	15	2.3	15	90	5	52	58	5	11	23	1.55
15600606--15600731	42	3.0	42	85	0	189	26	35	18	19	1.94
15601407--15601448	19	2.2	19	87	8	59	45	9	33	11	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15610087--15610167	34	2.4	34	80	0	90	35	17	17	29	1.93
15610196--15610261	34	1.9	34	90	0	105	33	28	16	21	1.95
15618441--15618488	26	1.9	25	84	16	64	62	0	0	37	0.95
15619348--15619393	19	2.4	19	77	0	56	58	4	0	36	1.18
15625324--15625372	21	2.3	21	82	10	64	28	4	18	48	1.66
15625469--15625550	22	3.9	22	82	6	98	30	4	13	51	1.62
15625826--15625874	20	2.5	19	83	9	62	38	14	6	40	1.71
15644903--15644948	23	2.0	23	91	4	74	39	21	8	30	1.84
15652718--15652821	54	1.9	54	96	0	190	36	17	20	25	1.94
15655383--15655426	13	3.5	13	78	6	54	20	2	0	77	0.88
15655386--15655442	18	3.1	18	72	12	53	21	3	0	75	0.95
15655383--15655442	25	2.4	23	79	17	66	21	3	0	75	0.95
15655396--15655475	35	2.2	36	78	10	83	22	8	1	67	1.25
15655568--15655601	17	1.9	18	88	5	52	17	5	0	76	0.98
15655762--15655802	17	2.6	16	81	14	50	19	0	0	80	0.71
15655763--15655803	21	2.0	21	86	9	59	17	0	0	82	0.66
15657695--15657986	37	7.8	37	86	2	377	42	18	15	23	1.88
15657690--15657980	75	3.9	75	89	3	415	41	18	15	24	1.88
15676460--15676484	13	1.9	13	100	0	50	44	0	8	48	1.32
15680419--15680465	15	3.1	15	90	0	67	48	17	2	31	1.58
15683019--15683070	28	1.9	27	84	7	70	28	21	19	30	1.97
15683124--15683161	20	1.9	20	100	0	76	44	21	5	28	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15686897--15686956	13	4.8	12	75	8	57	21	3	0	75	0.95
15686881--15686940	30	2.0	30	83	9	77	23	1	0	75	0.90
15686885--15686954	24	3.0	23	76	15	79	24	2	0	72	0.98
15686885--15686956	25	3.0	24	77	18	78	23	2	0	73	0.96
15686881--15686980	35	2.8	33	74	16	78	25	6	0	69	1.11
15692563--15692610	18	2.7	18	74	3	53	64	4	0	31	1.12
15695544--15695657	34	3.5	33	76	11	101	20	14	27	38	1.90
15696267--15696322	24	2.3	24	96	0	103	44	10	14	30	1.79
15697530--15697609	40	2.0	40	85	9	110	17	35	2	45	1.62
15701220--15701567	123	2.8	123	80	7	398	31	16	12	39	1.85
15701465--15701674	100	2.1	100	86	2	296	30	14	12	42	1.83
15701646--15701709	28	2.4	26	78	19	78	25	6	17	51	1.68
15701589--15701822	124	1.9	122	80	8	276	28	14	13	44	1.83
15706469--15706513	15	3.1	15	81	12	58	51	22	6	20	1.70
15711601--15711772	61	2.8	59	76	13	161	36	9	16	37	1.81
15712890--15713011	36	3.4	36	77	4	138	16	12	45	26	1.82
15712890--15713053	72	2.2	74	87	4	235	18	11	42	27	1.85
15719018--15719091	34	2.2	34	87	4	105	20	12	29	37	1.89
15719018--15719103	34	2.5	34	83	3	84	23	13	27	34	1.93
15719409--15719455	5	9.6	5	88	6	62	78	2	17	2	0.94
15725221--15725265	2	22.5	2	100	0	90	51	0	0	48	1.00
15725266--15725297	2	16.0	2	100	0	64	0	0	50	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15726148--15726195	20	2.4	20	96	0	87	33	2	8	56	1.41
15731436--15731473	19	2.0	19	94	0	67	28	0	28	42	1.56
15738546--15738592	23	2.0	24	84	12	62	72	14	6	6	1.25
15745128--15745162	16	2.1	17	89	5	54	22	8	8	60	1.54
15748384--15748408	2	12.5	2	100	0	50	52	0	48	0	1.00
15748479--15748515	15	2.5	16	83	16	53	0	32	5	62	1.18
15749576--15749910	186	1.8	182	82	6	433	34	17	17	30	1.93
15749899--15749964	32	2.0	33	97	2	125	25	6	46	21	1.74
15749955--15749985	3	10.3	3	92	0	53	32	0	35	32	1.58
15751523--15751994	235	2.0	236	94	0	838	39	20	12	27	1.89
15758284--15758313	10	3.0	10	100	0	60	20	10	0	70	1.16
15760295--15760326	3	10.7	3	93	0	55	65	3	0	31	1.08
15764837--15764877	20	2.0	20	100	0	82	39	4	9	46	1.58
15766168--15766209	15	2.7	16	88	3	59	50	2	0	47	1.14
15766423--15766559	42	3.1	46	72	18	112	58	2	2	35	1.28
15766509--15766584	23	3.3	23	85	5	93	57	1	1	39	1.15
15766507--15766580	22	3.3	21	81	9	85	59	1	1	37	1.14
15778557--15778591	16	2.2	16	89	0	52	48	8	2	40	1.49
15790189--15790578	157	2.5	157	94	0	663	19	6	18	55	1.64
15794395--15794419	2	12.5	2	100	0	50	52	0	0	48	1.00
15798891--15798933	16	2.8	15	82	6	50	48	4	0	46	1.22
15802648--15802715	26	2.6	27	83	2	75	32	22	11	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15806604--15806641	20	1.9	20	100	0	76	44	21	5	28	1.73
15814739--15814778	19	2.0	20	85	4	55	52	2	17	27	1.57
15818345--15818384	17	2.4	17	84	16	64	20	2	12	65	1.38
15830713--15830751	19	2.1	19	90	0	60	17	12	46	23	1.83
15832581--15832702	43	2.8	43	87	0	163	26	16	36	20	1.93
15832699--15832758	23	2.6	23	86	0	75	26	3	38	31	1.73
15833065--15833173	39	2.8	39	79	8	105	26	22	18	32	1.97
15841418--15841457	19	2.0	20	90	4	64	27	0	30	42	1.56
15845560--15845596	19	2.0	19	89	5	58	51	0	0	48	1.00
15845771--15845820	21	2.4	20	80	9	55	46	0	0	54	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59