genome.fa.s10.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  13  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4886039--4886118	31	2.6	30	88	6	106	30	12	11	46	1.77
4886434--4886566	60	2.3	59	74	6	135	34	8	17	39	1.79
4886745--4886788	22	2.0	22	86	4	61	25	13	27	34	1.93
4886776--4886881	23	4.6	23	90	4	151	23	11	28	36	1.89
4886755--4886881	46	2.8	46	86	3	168	24	11	27	36	1.90
4886892--4886973	22	3.8	22	75	6	78	45	21	10	21	1.83
4890266--4890330	28	2.3	28	86	5	87	43	10	7	38	1.68
4896794--4896818	11	2.3	11	100	0	50	32	8	8	52	1.60
4898994--4899117	50	2.5	49	89	5	194	41	16	16	25	1.88
4901560--4901671	15	7.7	15	68	18	76	56	5	1	36	1.33
4901554--4901672	43	2.8	43	82	12	163	54	5	2	37	1.36
4903038--4903101	29	2.2	29	83	2	76	31	9	17	42	1.81
4904255--4904279	13	1.9	13	100	0	50	52	0	0	48	1.00
4910110--4910480	47	7.9	47	88	2	532	45	11	5	37	1.66
4910110--4910480	142	2.6	139	90	3	546	45	11	5	37	1.66
4910118--4910465	189	1.8	189	95	1	626	45	11	6	36	1.65
4911454--4911565	15	7.7	15	66	18	67	55	4	2	37	1.34
4911451--4911566	43	2.7	43	86	7	157	55	4	2	37	1.34
4911887--4912013	42	3.0	42	91	0	191	19	7	32	40	1.81
4911940--4912012	25	3.2	25	62	28	63	21	5	32	39	1.77
4920265--4920294	9	3.3	9	90	0	51	76	0	0	23	0.78
4921732--4921832	39	2.6	39	93	0	175	26	13	22	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4921824--4921867	22	2.0	23	86	4	63	20	13	25	40	1.89
4922397--4922456	30	2.0	30	100	0	120	23	16	30	30	1.96
4923316--4923541	118	1.9	118	84	0	301	19	8	24	47	1.77
4923095--4923566	110	4.1	117	81	4	481	17	11	26	45	1.82
4923191--4923590	118	3.5	117	79	4	262	17	11	27	44	1.82
4931859--4931908	26	1.9	26	84	8	66	56	4	14	26	1.56
4933488--4933533	24	1.9	24	90	0	74	26	23	17	32	1.97
4935428--4935486	23	2.7	21	81	7	64	38	23	11	25	1.89
4939130--4939164	13	2.7	13	95	0	61	51	8	17	22	1.72
4947875--4947923	22	2.2	22	85	3	62	34	2	6	57	1.35
4957337--4957576	68	3.5	68	80	2	257	36	8	19	35	1.83
4963814--4963847	10	3.3	10	88	8	50	44	2	0	52	1.16
4970795--4970851	26	2.2	26	100	0	114	33	24	14	28	1.94
4973503--4973562	28	2.1	30	87	6	88	33	8	15	43	1.76
4974084--4974143	30	2.1	30	90	6	97	33	8	15	43	1.76
4974088--4974150	30	2.2	28	83	8	83	33	9	14	42	1.78
4973093--4974248	581	2.0	581	99	0	2276	35	10	20	33	1.87
4977202--4977239	19	2.0	19	100	0	76	42	31	0	26	1.56
4981262--4981463	108	1.9	108	85	2	280	56	10	23	9	1.61
4981594--4981817	122	1.8	123	88	0	342	40	12	21	25	1.88
4984987--4985021	11	2.9	12	87	12	54	60	14	25	0	1.35
4986481--4986570	41	2.2	41	84	2	110	41	13	18	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4991663--4991696	18	1.9	18	88	5	52	20	11	11	55	1.67
5005693--5005756	30	2.1	31	85	2	85	45	6	14	34	1.70
5009625--5009659	2	17.5	2	93	0	61	45	0	2	51	1.16
5019730--5019851	22	5.5	22	65	16	56	56	1	40	1	1.19
5019699--5019928	88	2.6	87	79	12	252	59	2	37	1	1.18
5019714--5019850	44	3.0	48	76	14	139	58	1	38	1	1.16
5019714--5019828	30	3.9	30	68	17	71	60	0	36	1	1.13
5020000--5020089	19	4.7	20	69	22	59	66	1	32	0	0.99
5020025--5020089	16	3.8	16	70	21	51	67	1	30	0	1.00
5020044--5020090	20	2.3	21	78	7	62	70	2	27	0	0.99
5020097--5020130	14	2.5	13	90	4	50	79	0	20	0	0.73
5020741--5021086	120	2.9	120	82	1	424	43	14	11	31	1.81
5021900--5021973	31	2.4	31	88	2	114	33	14	21	29	1.94
5021875--5022066	92	2.1	92	81	8	221	33	19	18	28	1.95
5021875--5022102	31	7.5	30	69	16	94	32	19	17	29	1.95
5021930--5022140	62	3.5	61	74	10	198	33	20	17	28	1.95
5022191--5022252	21	2.9	21	82	2	79	33	25	8	32	1.85
5022313--5022938	122	5.1	121	79	6	645	30	21	13	34	1.92
5022417--5022466	21	2.4	21	86	10	75	30	30	14	26	1.94
5022213--5022453	101	2.4	100	82	4	297	30	21	13	34	1.92
5022535--5022596	21	2.9	21	81	11	65	29	30	9	30	1.89
5022785--5022840	21	2.7	21	80	0	67	32	25	16	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5022447--5023235	244	3.3	240	77	11	719	30	20	13	35	1.91
5022903--5022953	21	2.5	20	78	9	57	29	35	13	21	1.92
5022850--5023041	104	1.8	104	88	2	296	31	24	13	30	1.94
5022731--5023167	227	1.9	227	88	0	660	29	21	14	34	1.93
5023004--5023067	22	2.9	22	86	6	94	28	29	12	29	1.93
5023011--5023063	21	2.5	21	90	3	79	32	32	11	24	1.91
5022953--5023235	123	2.3	123	80	1	318	30	19	13	36	1.90
5023419--5023457	12	3.4	12	82	13	55	84	0	12	2	0.72
5023429--5023465	10	3.6	10	89	7	56	89	0	8	2	0.58
5023419--5023465	21	2.2	21	88	3	67	85	0	10	4	0.74
5023411--5023469	19	3.0	19	80	11	66	81	0	11	6	0.87
5024012--5024078	32	2.1	31	86	8	91	58	0	40	1	1.07
5024012--5024076	29	2.1	32	86	8	91	58	0	40	1	1.07
5023966--5024190	107	2.1	108	81	5	260	57	2	36	3	1.28
5024070--5024122	23	2.3	23	77	9	54	60	3	28	7	1.41
5024120--5024192	32	2.2	32	80	7	85	54	2	41	1	1.23
5024142--5024197	16	3.5	16	71	9	51	58	1	37	1	1.19
5024276--5024380	40	2.8	36	76	16	97	66	0	29	2	1.12
5025035--5025343	121	2.6	116	83	7	370	42	13	9	34	1.76
5031472--5031508	19	1.9	19	94	0	65	48	24	10	16	1.77
5031405--5031543	67	2.1	66	81	11	160	43	23	16	17	1.88
5033094--5033280	63	3.0	63	90	1	277	41	4	18	35	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5034272--5034308	10	3.7	10	92	0	56	45	8	27	18	1.77
5036401--5036445	23	2.0	23	95	0	81	24	22	20	33	1.97
5036493--5039501	753	4.0	754	95	0	5283	29	15	13	41	1.85
5038861--5038886	12	2.2	12	100	0	52	42	0	0	57	0.98
5041873--5041951	2	39.5	2	92	5	133	46	0	0	51	1.00
5051070--5051200	51	2.6	51	97	0	244	27	25	11	35	1.90
5053186--5053271	45	2.0	43	91	8	140	33	15	22	29	1.94
5055750--5055806	27	2.2	26	90	6	89	45	1	0	52	1.11
5055760--5056028	22	13.2	21	67	18	97	41	2	2	53	1.25
5055785--5056018	125	1.9	124	86	0	333	41	2	2	53	1.26
5056014--5056089	28	2.8	27	88	9	111	42	0	1	56	1.07
5056014--5056124	54	2.1	53	80	8	118	42	0	3	53	1.24
5056119--5056191	20	3.5	21	71	14	62	42	2	2	52	1.30
5056476--5056642	48	3.4	48	72	14	158	40	2	4	52	1.34
5056462--5056667	26	8.2	25	67	20	83	39	2	3	54	1.30
5056474--5056655	101	1.8	100	90	1	292	40	2	3	53	1.31
5057486--5057539	24	2.2	24	83	0	72	16	14	12	55	1.69
5057497--5057571	24	3.2	24	81	5	73	24	13	10	52	1.72
5065018--5065042	13	1.9	13	100	0	50	60	0	0	40	0.97
5068970--5069082	57	2.0	56	81	10	131	31	13	34	20	1.91
5069189--5069262	33	2.2	33	83	4	87	22	6	50	20	1.72
5080793--5080826	18	1.9	17	88	5	50	41	8	11	38	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5085739--5085792	26	2.1	25	86	13	74	64	0	0	35	0.94
5085729--5085792	28	2.3	28	84	12	80	62	0	0	37	0.95
5091060--5091104	21	2.1	21	83	0	54	31	17	20	31	1.96
5091132--5091267	55	2.4	57	75	16	140	44	7	12	36	1.70
5091132--5091267	31	4.9	27	66	21	75	44	7	12	36	1.70
5094581--5094633	23	2.2	24	83	12	74	45	3	11	39	1.58
5094594--5094639	23	2.2	21	81	14	51	43	2	10	43	1.51
5095165--5095198	2	17.0	2	100	0	68	50	0	50	0	1.00
5096936--5097070	66	2.0	66	87	2	191	40	10	28	20	1.85
5097225--5097849	309	2.0	316	84	6	817	31	13	18	36	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59