genome.fa.s10.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  40  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14445078--14445189	35	3.3	33	71	14	86	30	25	14	30	1.95
14445109--14445212	32	3.1	33	75	8	120	34	27	15	22	1.94
14447857--14447895	20	2.0	20	89	0	60	38	20	2	38	1.66
14453092--14453160	35	1.9	36	85	2	95	36	27	13	23	1.92
14459198--14459259	30	2.1	30	90	0	97	35	4	11	48	1.60
14463181--14463206	12	2.2	12	100	0	52	30	19	15	34	1.93
14464035--14464099	30	2.2	30	86	2	87	36	7	10	44	1.68
14470776--14470804	13	2.3	13	94	5	51	34	0	0	65	0.93
14476697--14476810	37	3.1	36	89	3	174	23	36	10	28	1.88
14486224--14486348	42	3.0	41	83	2	160	22	32	21	23	1.98
14488337--14488382	22	2.1	22	83	0	56	4	8	6	80	1.01
14492954--14493006	21	2.5	21	96	0	97	28	26	18	26	1.98
14493371--14493451	36	2.2	36	89	4	119	27	13	25	33	1.94
14504175--14504216	22	1.9	22	90	0	66	26	19	26	28	1.98
14504390--14504550	60	2.7	60	86	0	214	32	21	21	24	1.97
14504913--14505044	43	3.1	43	81	6	151	21	37	17	22	1.94
14515640--14515681	22	1.9	22	85	9	59	50	4	16	28	1.66
14521923--14522131	103	2.0	103	92	1	348	32	16	15	36	1.90
14522170--14522200	16	1.9	16	93	0	53	87	0	3	9	0.66
14522171--14522206	17	2.2	17	90	5	56	88	0	5	5	0.61
14526835--14526999	82	2.0	83	97	1	314	55	14	9	20	1.67
14532718--14533025	156	2.0	156	90	2	485	41	8	15	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14543120--14543153	17	2.0	17	88	11	52	47	14	0	38	1.45
14543295--14543468	29	6.0	28	78	8	152	37	12	8	41	1.74
14543295--14543468	59	3.0	56	76	11	170	37	12	8	41	1.74
14544427--14544472	20	2.3	20	88	0	65	30	2	23	43	1.66
14544436--14544473	20	1.9	20	94	0	67	31	0	28	39	1.57
14549365--14549457	32	2.9	31	83	3	105	46	19	5	29	1.72
14550814--14551299	223	2.2	224	87	2	724	48	9	14	27	1.75
14551570--14551610	17	2.4	17	80	19	50	41	26	0	31	1.56
14556643--14557015	47	8.0	47	76	0	325	28	16	31	23	1.96
14556665--14557015	94	3.8	92	82	3	391	28	15	31	23	1.96
14556643--14557015	187	2.0	188	85	2	509	28	16	31	23	1.96
14556667--14557015	140	2.5	140	79	4	355	28	15	31	23	1.95
14557003--14557102	53	1.9	52	89	6	157	25	19	28	28	1.98
14557005--14557121	53	2.2	52	84	4	137	26	20	26	26	1.99
14557591--14557794	31	6.6	31	85	2	223	24	17	21	36	1.95
14559440--14559922	156	3.1	156	86	0	660	33	17	19	29	1.95
14560277--14560671	31	12.8	31	76	4	386	21	20	18	39	1.92
14560291--14560634	93	3.7	93	92	1	521	20	19	18	40	1.92
14562147--14562199	16	3.4	16	76	5	54	35	11	3	49	1.57
14562149--14562209	14	4.1	14	78	12	59	34	11	4	49	1.61
14562230--14562275	16	3.1	15	78	18	51	41	13	0	45	1.43
14563295--14563651	31	11.6	31	82	5	368	24	16	21	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14566562--14566831	135	2.0	134	99	0	531	22	18	25	32	1.97
14567265--14567345	30	2.6	31	84	5	103	30	20	18	29	1.97
14567272--14567345	31	2.4	30	84	6	96	33	22	17	25	1.96
14567326--14567382	23	2.5	23	79	0	78	24	31	19	24	1.98
14569525--14569584	30	2.1	29	81	6	68	31	8	21	38	1.83
14572678--14572737	20	3.0	20	80	7	70	53	0	6	40	1.27
14574627--14574670	11	4.3	11	81	18	51	0	22	9	68	1.18
14575779--14575813	17	2.0	18	88	5	54	57	0	28	14	1.38
14576916--14576970	23	2.4	23	90	0	83	14	29	7	49	1.70
14577439--14577578	45	3.1	45	76	6	131	29	16	15	38	1.90
14577456--14577595	45	3.1	45	81	0	163	32	16	15	36	1.90
14577643--14577689	24	2.0	24	86	0	67	25	10	19	44	1.82
14577662--14577761	45	2.2	45	83	0	119	29	17	17	37	1.92
14577524--14577727	69	3.0	69	91	0	300	29	13	16	39	1.87
14580904--14580950	23	2.0	23	87	0	67	61	6	10	21	1.50
14584770--14584794	13	1.9	13	100	0	50	44	0	8	48	1.32
14589803--14589844	19	2.2	19	83	8	50	54	0	4	40	1.21
14590251--14590288	20	1.9	20	100	0	76	34	5	15	44	1.69
14596302--14596330	9	3.0	10	90	10	51	51	6	0	41	1.28
14598211--14598393	28	6.5	28	86	2	215	26	19	19	35	1.95
14598321--14598471	28	5.7	26	81	3	117	29	19	13	37	1.90
14598349--14598471	26	4.7	26	79	5	124	29	19	13	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14599018--14599062	23	2.0	23	86	0	63	62	6	11	20	1.50
14600631--14600676	20	2.3	20	96	0	83	28	4	21	45	1.71
14612614--14612663	25	2.0	25	96	0	91	54	8	30	8	1.58
14613642--14613967	180	1.8	180	87	2	494	38	13	14	34	1.85
14618999--14619052	26	2.1	26	89	6	83	59	7	25	7	1.51
14620734--14620778	2	23.5	2	84	8	58	44	0	0	55	0.99
14620734--14620778	9	4.7	10	81	10	58	44	0	0	55	0.99
14620737--14620775	13	3.0	13	80	0	51	46	0	0	53	1.00
14620734--14620778	19	2.4	19	92	7	74	44	0	0	55	0.99
14621356--14621398	5	8.6	5	89	0	68	76	0	23	0	0.78
14621400--14621479	26	3.1	26	80	8	92	45	17	25	12	1.83
14621445--14621494	25	2.0	24	85	14	66	42	16	28	14	1.86
14629004--14629049	20	2.3	20	96	0	83	45	21	4	28	1.71
14632361--14632405	19	2.4	19	85	7	56	62	0	0	37	0.96
14632731--14632779	23	2.1	23	81	7	55	73	2	6	18	1.14
14633214--14633304	34	2.7	34	89	0	137	27	14	23	35	1.93
14633399--14633482	34	2.4	34	78	9	91	34	16	23	25	1.95
14633613--14633658	5	9.6	5	92	2	69	78	0	21	0	0.76
14633663--14633740	25	3.0	26	83	9	97	43	15	25	15	1.86
14633663--14633717	27	2.1	26	93	3	92	45	14	23	16	1.84
14633671--14633754	25	3.3	24	76	17	80	44	14	26	15	1.84
14637832--14637856	12	2.1	12	100	0	50	64	8	8	20	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14638627--14638672	20	2.3	20	88	7	67	32	4	17	45	1.68
14638717--14638769	28	1.9	27	88	3	79	30	18	22	28	1.98
14638717--14638775	28	2.1	28	84	6	75	30	20	23	25	1.98
14643400--14643447	24	2.0	24	84	4	62	52	10	18	18	1.74
14643705--14643751	2	23.0	2	95	4	85	48	0	2	48	1.13
14646062--14646096	14	2.6	14	90	4	54	34	0	0	65	0.93
14647137--14647180	22	2.0	22	86	8	63	4	18	2	75	1.09
14647129--14647187	21	2.8	22	78	14	61	5	20	1	72	1.12
14647836--14647890	23	2.4	23	93	0	92	27	12	36	23	1.91
14647917--14648274	47	7.6	47	87	0	428	28	18	27	24	1.98
14647985--14648110	24	5.3	24	66	17	84	30	20	26	23	1.99
14648335--14648378	23	1.9	23	90	0	70	27	18	29	25	1.98
14651003--14651039	18	2.0	19	89	5	58	43	27	0	29	1.55
14651914--14651990	31	2.5	30	79	6	82	29	14	15	40	1.87
14651946--14652082	31	4.4	31	89	3	213	27	12	18	42	1.86
14651915--14652080	62	2.7	62	88	3	237	28	13	18	40	1.88
14653500--14653761	145	1.8	145	88	0	398	30	21	18	29	1.97
14653496--14653828	145	2.3	145	81	3	384	30	20	18	30	1.96
14655947--14656045	31	3.2	31	66	8	85	28	35	14	22	1.93
14655946--14656075	62	2.1	62	86	2	181	28	33	13	23	1.93
14656006--14656339	86	3.9	86	84	1	454	29	29	17	23	1.97
14656009--14656339	172	1.9	173	90	0	529	29	29	16	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14656614--14656705	22	4.2	22	100	0	184	45	0	8	45	1.34
14660010--14660133	63	2.0	63	86	0	176	34	12	31	21	1.90
14660094--14660133	9	4.4	9	83	0	53	35	5	37	22	1.76
14660450--14660505	19	3.1	19	76	10	62	78	0	3	17	0.89
14660445--14660500	17	3.2	17	78	11	51	76	0	5	17	0.96
14660634--14660956	50	6.4	49	81	5	319	43	21	6	27	1.78
14660633--14660925	150	1.9	152	82	6	373	43	22	6	27	1.79
14661371--14661403	2	17.0	2	93	6	59	51	0	0	48	1.00
14662163--14662469	51	6.0	51	90	2	463	44	22	7	25	1.79
14662167--14662469	103	3.0	103	93	0	491	45	21	7	25	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59