genome.fa.s10.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  14  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5099682--5099729	22	2.2	22	81	3	53	39	6	4	50	1.47
5109326--5109375	26	1.9	26	87	0	73	50	12	18	20	1.78
5111745--5111838	34	2.8	33	79	9	93	55	4	13	26	1.57
5115111--5115177	35	1.9	35	84	0	89	44	4	22	28	1.72
5115274--5115314	21	1.9	22	85	5	57	70	14	4	9	1.30
5124559--5124591	7	5.0	7	96	3	52	54	0	45	0	0.99
5124560--5124591	2	17.0	2	87	12	50	53	0	46	0	1.00
5125428--5125465	18	2.2	18	85	4	51	52	0	0	47	1.00
5134889--5135102	39	5.1	39	84	14	293	36	26	15	21	1.93
5134900--5135082	46	4.1	46	88	9	299	37	26	15	20	1.93
5134889--5135102	85	2.5	85	99	0	419	36	26	15	21	1.93
5141165--5141196	2	16.0	2	100	0	64	50	0	0	50	1.00
5152925--5152981	2	28.5	2	85	0	78	45	1	5	47	1.35
5152912--5152966	8	7.2	8	84	12	53	49	7	0	43	1.30
5159133--5159180	24	2.1	23	84	7	62	50	0	0	50	1.00
5165923--5166314	47	8.5	47	92	2	591	47	14	3	34	1.62
5167332--5167400	15	4.7	15	68	13	54	55	4	4	36	1.40
5168509--5168548	21	1.9	21	100	0	80	45	15	10	30	1.78
5169226--5169255	11	2.6	11	94	5	51	83	0	16	0	0.65
5169211--5169263	22	2.5	21	79	11	54	79	0	15	5	0.91
5169211--5169257	12	4.2	11	76	13	51	78	0	17	4	0.90
5171369--5171402	14	2.5	13	86	9	50	8	14	17	58	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5172648--5172768	52	2.3	52	95	0	215	26	9	21	42	1.82
5173508--5173562	28	2.0	28	89	7	85	21	1	16	60	1.45
5173510--5173562	14	3.6	14	75	14	54	22	1	16	58	1.48
5183099--5183127	12	2.4	12	100	0	58	58	34	6	0	1.25
5210525--5210552	2	14.0	2	100	0	56	50	0	0	50	1.00
5210618--5210645	2	14.0	2	100	0	56	50	0	0	50	1.00
5211981--5212010	15	2.1	15	93	6	53	40	13	16	30	1.87
5212654--5212687	2	17.0	2	100	0	68	0	0	50	50	1.00
5213749--5213816	29	2.4	29	83	13	81	35	4	0	60	1.17
5213772--5213834	23	2.9	22	73	20	60	36	1	0	61	1.05
5214099--5214163	21	3.0	21	75	24	73	46	1	0	52	1.10
5214100--5214191	43	2.2	43	84	5	118	51	1	0	47	1.07
5230590--5231140	191	2.8	191	90	4	780	32	11	6	49	1.64
5234743--5234830	45	2.0	42	81	12	99	19	7	2	70	1.23
5234789--5234830	16	2.5	17	81	11	52	16	4	2	76	1.07
5235316--5235347	13	2.4	14	94	5	57	6	31	0	62	1.20
5236161--5236237	29	2.5	30	83	10	86	22	3	0	74	0.98
5236160--5236236	22	3.5	21	75	19	68	22	3	0	74	0.98
5236492--5237014	59	8.9	59	78	6	495	33	20	13	32	1.91
5236496--5237014	118	4.4	116	83	4	592	33	20	13	31	1.92
5237935--5237968	14	2.5	13	90	9	50	17	0	0	82	0.67
5237935--5237966	13	2.4	14	94	5	57	15	0	0	84	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5249612--5249653	16	2.5	17	81	11	52	16	4	2	76	1.07
5250135--5250171	13	2.6	14	87	12	58	5	32	0	62	1.18
5250973--5251034	26	2.4	26	79	12	65	22	4	0	72	1.03
5251976--5252185	108	1.9	108	90	3	334	36	16	2	44	1.63
5253192--5253263	30	2.4	29	78	13	76	52	1	6	38	1.37
5258747--5258809	14	4.5	14	69	21	51	49	4	1	44	1.33
5261245--5261322	39	2.0	39	97	0	147	30	14	10	44	1.78
5269557--5269586	6	4.8	6	95	4	51	83	0	16	0	0.65
5278230--5278295	31	2.2	30	86	2	87	31	12	10	45	1.76
5280501--5280558	4	14.0	4	78	10	55	24	0	0	75	0.80
5280501--5280535	11	3.1	11	91	4	52	28	0	0	71	0.86
5287035--5287078	11	4.3	11	81	18	51	0	20	9	70	1.14
5287040--5287077	11	3.3	12	85	10	53	0	23	5	71	1.07
5293978--5294039	32	1.9	32	86	0	88	30	11	24	33	1.90
5295125--5295154	15	2.0	15	93	0	51	33	23	6	36	1.81
5296587--5296627	22	1.9	22	90	5	66	26	9	17	46	1.79
5296621--5296669	21	2.3	21	85	0	62	18	20	28	32	1.96
5296656--5296814	26	6.6	25	82	12	165	24	12	27	35	1.91
5296679--5296822	23	6.1	23	77	11	134	25	11	27	35	1.91
5296656--5296817	72	2.3	71	85	8	204	24	12	27	36	1.91
5296679--5296822	46	3.1	48	85	6	181	25	11	27	35	1.91
5296763--5296836	23	3.2	23	90	0	67	27	12	27	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5296751--5296838	46	1.9	46	85	0	122	27	12	27	32	1.93
5296858--5296926	22	3.2	22	79	4	86	43	23	8	24	1.82
5301431--5301524	45	2.1	45	83	0	116	44	5	5	44	1.49
5303405--5303452	23	2.1	23	100	0	96	31	29	0	39	1.57
5303668--5303732	25	2.7	24	80	4	69	38	4	10	46	1.60
5311214--5311248	15	2.4	15	95	4	63	0	40	0	60	0.97
5316018--5316051	15	2.3	15	94	0	59	50	0	8	41	1.34
5318937--5318993	21	2.7	21	94	0	96	38	7	19	35	1.79
5319224--5319356	41	3.3	41	67	17	123	36	19	11	32	1.87
5319165--5319482	82	3.9	82	93	2	455	35	21	10	32	1.88
5319184--5319311	40	3.2	40	67	18	120	35	25	9	30	1.87
5319346--5319479	41	3.3	41	62	19	98	35	22	10	32	1.88
5319165--5319479	163	1.9	162	87	3	454	35	21	10	32	1.88
5323118--5323184	12	6.1	11	75	13	66	50	16	4	28	1.64
5323103--5323176	32	2.3	32	97	0	139	51	14	5	28	1.65
5327373--5327451	34	2.3	34	86	4	115	37	2	20	39	1.66
5328195--5328285	24	3.8	24	84	5	112	39	21	16	21	1.92
5333184--5333225	21	2.0	21	95	0	75	16	14	35	33	1.89
5334765--5334811	22	2.1	23	84	11	62	31	6	12	48	1.66
5338993--5339056	29	2.2	28	78	8	74	62	6	6	25	1.42
5339000--5339062	29	2.1	30	85	2	83	61	6	4	26	1.40
5343855--5343939	23	3.7	23	82	0	107	28	8	36	27	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5343974--5344030	23	2.5	23	85	5	80	26	15	35	22	1.94
5344055--5344108	23	2.3	23	83	0	63	25	11	35	27	1.90
5343893--5344170	81	3.4	80	85	1	322	28	14	31	25	1.94
5344136--5344190	23	2.4	23	87	0	74	29	20	30	20	1.97
5343893--5344190	162	1.8	162	80	2	357	29	14	31	24	1.94
5344159--5344396	104	2.3	104	79	7	275	29	15	32	22	1.95
5344261--5344341	23	3.5	23	75	0	63	25	18	34	20	1.96
5344345--5344434	47	1.9	47	86	0	126	28	13	33	24	1.93
5344862--5345067	110	1.9	110	86	2	297	14	11	30	44	1.79
5344799--5345073	55	5.0	55	79	1	255	15	11	28	44	1.82
5345141--5345229	31	2.9	31	87	0	124	28	14	21	35	1.93
5348972--5349529	117	4.8	117	83	0	623	30	30	16	23	1.96
5348979--5349529	234	2.4	234	84	1	728	29	30	16	23	1.96
5351943--5351980	13	2.9	13	92	0	58	36	23	21	18	1.95
5353330--5353438	31	3.5	31	94	2	193	30	22	17	30	1.96
5362951--5362977	12	2.2	12	100	0	54	25	25	22	25	2.00
5370385--5370607	111	2.0	111	96	1	412	25	17	13	44	1.84
5376448--5376498	12	4.2	12	82	0	57	11	11	47	29	1.76
5376496--5376558	27	2.3	27	83	5	74	17	1	60	20	1.44
5376530--5376582	18	2.9	18	80	0	61	16	3	62	16	1.47
5376513--5376567	21	2.6	21	80	11	67	14	1	65	18	1.36
5376518--5376582	21	3.2	20	74	12	62	15	3	63	18	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5376625--5376669	12	3.8	12	78	0	54	15	0	62	22	1.33
5376629--5376681	24	2.2	24	86	6	72	15	0	64	20	1.29
5376632--5376690	21	2.8	22	79	7	68	15	1	64	18	1.37
5376707--5376766	30	2.0	30	83	0	75	13	20	40	26	1.89
5380621--5380647	2	13.5	2	100	0	54	51	48	0	0	1.00
5386315--5386355	19	2.2	20	82	13	59	51	0	0	48	1.00
5390143--5390178	12	3.0	12	87	0	54	0	2	11	86	0.68
5390663--5390750	12	7.2	11	75	20	61	18	1	1	79	0.86
5390666--5390752	7	12.7	7	75	12	83	17	1	1	80	0.84
5390688--5390734	10	4.9	10	80	17	55	21	0	2	76	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59