genome.fa.s10.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  33  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12042310--12042347	20	2.0	20	94	5	69	21	21	15	42	1.89
12043133--12043264	43	3.1	43	84	6	162	22	18	37	21	1.94
12043296--12043329	8	4.2	8	88	0	50	41	0	11	47	1.40
12044744--12044786	22	2.0	22	81	9	52	9	9	9	72	1.30
12046511--12046721	29	7.4	29	79	6	202	43	18	19	18	1.89
12048395--12048548	55	2.8	55	85	0	227	30	35	11	22	1.90
12048395--12048588	110	1.8	109	84	8	265	29	36	12	21	1.90
12057041--12057074	2	17.0	2	93	0	59	2	0	47	50	1.16
12072203--12072261	25	2.4	25	88	2	84	30	30	15	23	1.95
12075824--12075979	58	2.8	53	80	7	170	41	20	17	20	1.91
12075809--12075979	29	6.1	29	75	9	140	40	19	19	19	1.91
12096320--12096344	13	1.9	13	100	0	50	48	8	0	44	1.32
12097474--12097527	28	2.0	28	88	3	83	29	22	18	29	1.97
12098924--12099037	37	3.1	36	87	3	156	25	36	11	26	1.90
12099825--12099864	3	13.3	3	100	0	80	67	0	32	0	0.91
12117248--12117290	22	2.0	22	81	9	52	9	9	9	72	1.30
12118972--12119055	28	3.0	26	77	6	78	36	20	23	19	1.95
12118972--12119197	29	8.0	29	74	5	153	39	16	22	21	1.92
12121269--12121298	2	15.0	2	100	0	60	0	50	0	50	1.00
12121352--12121399	2	24.0	2	100	0	96	0	50	0	50	1.00
12134502--12134545	2	22.0	2	100	0	88	0	50	0	50	1.00
12135963--12136023	2	30.5	2	96	0	113	0	49	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12139881--12139926	19	2.4	20	82	10	60	54	0	2	43	1.12
12141741--12141765	13	1.9	13	100	0	50	44	0	8	48	1.32
12146844--12147005	81	2.0	81	98	0	315	30	21	16	31	1.95
12147352--12147404	28	1.9	27	92	3	88	30	15	24	30	1.95
12148699--12148736	20	1.9	20	94	0	67	31	5	18	44	1.72
12148790--12148848	28	2.2	25	77	16	64	28	20	23	27	1.99
12157223--12157247	13	1.9	13	100	0	50	44	0	8	48	1.32
12161540--12161564	13	1.9	13	100	0	50	48	8	0	44	1.32
12173636--12173669	2	17.0	2	93	0	59	0	47	0	52	1.00
12173900--12173947	23	2.0	25	84	8	64	33	2	14	50	1.55
12179774--12179799	13	2.0	13	100	0	52	46	0	7	46	1.31
12184418--12184499	27	3.0	27	82	8	78	36	25	20	17	1.94
12184428--12184612	29	6.7	28	74	10	152	37	23	20	17	1.94
12184438--12184596	81	2.0	78	85	6	212	38	23	20	16	1.92
12187096--12187205	25	4.4	25	83	0	121	21	15	33	29	1.94
12187097--12187205	50	2.2	50	83	0	137	22	15	33	28	1.94
12190897--12190950	3	18.7	3	84	7	76	62	1	1	33	1.16
12204347--12204378	2	16.0	2	100	0	64	50	0	0	50	1.00
12204903--12204944	21	2.0	20	86	4	57	35	19	23	21	1.96
12205178--12205218	21	2.0	21	85	0	55	36	17	24	21	1.94
12209198--12209241	2	22.0	2	100	0	88	50	0	0	50	1.00
12209241--12209296	2	28.5	2	92	3	96	0	1	50	48	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12217367--12217433	19	3.4	19	74	20	66	52	0	0	47	1.00
12217377--12217407	16	1.9	16	100	0	62	51	0	0	48	1.00
12217375--12217452	22	3.7	22	75	14	76	55	2	0	42	1.13
12219979--12220005	14	1.9	14	100	0	54	48	0	0	51	1.00
12220884--12220927	21	2.1	21	91	8	72	34	2	0	63	1.07
12223003--12223034	15	2.1	15	94	0	55	68	0	0	31	0.90
12223411--12223453	15	2.9	15	92	0	68	32	25	9	32	1.88
12224754--12224790	12	3.3	12	78	21	53	35	16	13	35	1.88
12225750--12226012	68	3.9	67	79	3	256	37	11	19	31	1.88
12226709--12226747	16	2.6	15	84	8	53	35	5	25	33	1.78
12226709--12226749	15	2.6	17	82	17	54	36	4	24	34	1.77
12227130--12227159	2	15.0	2	92	0	51	46	0	3	50	1.18
12230658--12230766	34	3.2	33	72	5	101	22	7	34	34	1.82
12231705--12231823	63	1.9	63	85	3	168	41	18	15	24	1.90
12241596--12241626	2	16.0	2	93	6	55	51	48	0	0	1.00
12252227--12252313	36	2.4	36	86	0	111	24	17	37	20	1.93
12259722--12259820	38	2.6	38	85	6	128	21	15	40	23	1.90
12261337--12261368	2	16.0	2	100	0	64	50	0	0	50	1.00
12265224--12265258	4	8.8	4	90	9	54	48	2	0	48	1.16
12267461--12267499	7	5.6	7	87	0	60	0	35	0	64	0.94
12273126--12273209	43	2.0	43	92	0	141	23	17	33	25	1.97
12273318--12273364	23	2.0	23	84	8	60	36	10	14	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12273459--12273512	22	2.8	17	73	26	54	22	14	29	33	1.94
12275871--12276058	73	2.6	73	82	7	204	40	20	18	20	1.92
12278558--12278638	42	1.9	42	94	0	144	20	22	34	22	1.97
12278873--12278934	26	2.4	26	94	0	106	24	3	40	32	1.71
12284428--12284465	20	1.9	19	89	5	58	34	13	21	31	1.91
12286842--12286924	41	2.0	41	90	0	130	53	9	25	12	1.68
12287036--12287081	22	2.1	22	91	0	74	26	4	17	52	1.63
12287434--12287470	17	2.2	17	90	0	56	29	24	35	10	1.89
12288467--12288509	22	2.0	20	86	8	59	34	11	25	27	1.91
12293136--12293262	43	3.0	43	89	2	193	24	18	34	22	1.96
12293521--12293566	22	2.1	22	91	0	74	26	21	28	23	1.99
12295277--12295398	43	2.8	43	85	7	142	22	18	39	20	1.93
12295395--12295454	23	2.6	23	89	0	84	26	1	38	33	1.67
12297506--12297545	20	2.0	20	90	0	62	37	17	10	35	1.83
12300124--12300253	68	1.9	68	87	3	190	38	10	18	32	1.85
12300206--12300378	68	2.5	69	79	5	165	36	12	19	31	1.89
12302056--12302085	2	15.0	2	92	0	51	46	0	3	50	1.18
12303463--12303511	22	2.2	22	92	0	80	20	30	8	40	1.81
12303955--12303996	2	21.0	2	100	0	84	50	0	0	50	1.00
12304755--12304814	22	2.7	22	89	0	93	18	23	28	30	1.98
12312351--12312389	20	2.1	18	85	9	51	7	12	10	69	1.37
12328088--12328147	30	2.1	29	81	6	68	31	8	21	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12336766--12336816	5	10.2	5	84	0	57	33	19	7	39	1.81
12336839--12336866	11	2.5	11	100	0	56	53	14	0	32	1.41
12336860--12336903	22	2.0	22	86	0	61	45	22	4	27	1.72
12345542--12345599	20	2.9	20	76	0	62	37	12	15	34	1.85
12351685--12351736	22	2.4	22	83	0	68	23	25	19	32	1.97
12352006--12352098	43	2.2	43	86	3	125	24	33	16	25	1.96
12354111--12354159	26	1.9	25	84	12	64	4	26	0	69	1.06
12355111--12355276	71	2.3	71	86	2	226	17	12	43	27	1.84
12355114--12355233	36	3.4	36	77	6	145	16	10	47	25	1.79
12355570--12355689	62	1.9	62	89	0	186	28	26	15	30	1.96
12361067--12361166	19	5.1	19	62	11	58	22	39	16	23	1.92
12361282--12361312	2	16.0	2	93	6	55	51	48	0	0	1.00
12362846--12362883	5	7.8	5	82	5	51	0	21	2	76	0.91
12363751--12363861	44	2.5	44	88	0	159	25	9	36	27	1.88
12365335--12365501	80	2.1	80	94	0	289	31	10	24	33	1.89
12365335--12365530	80	2.4	78	88	5	232	32	9	23	34	1.88
12366935--12367028	34	2.7	34	78	6	100	26	13	26	32	1.94
12367222--12367284	10	6.6	10	83	10	62	84	1	12	1	0.78
12367229--12367291	1	63.0	1	74	0	54	87	1	9	1	0.68
12367227--12367291	6	11.0	6	82	15	64	86	1	10	1	0.72
12367286--12367343	25	2.3	25	90	0	89	46	13	24	15	1.82
12374503--12374575	20	3.6	20	77	12	69	35	16	12	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12378415--12378521	35	3.2	33	78	8	117	28	13	24	33	1.93
12378432--12378541	32	3.4	32	75	8	114	24	14	24	36	1.93
12378392--12378541	67	2.2	67	84	5	196	24	13	25	37	1.91
12398100--12398235	39	3.6	38	81	8	118	27	34	12	25	1.92
12398147--12398235	39	2.3	39	90	0	142	28	33	13	24	1.93
12401919--12402019	38	2.6	39	79	6	98	23	18	35	21	1.96
12405386--12405419	2	17.0	2	100	0	68	50	0	0	50	1.00
12413038--12413088	15	3.4	15	81	10	59	49	19	0	31	1.49
12422839--12422889	2	25.5	2	95	0	93	49	1	0	49	1.12
12432126--12432185	23	2.6	23	89	0	84	33	38	1	26	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59