genome.fa.s10.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  15  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5390663--5390753	43	2.3	38	87	11	128	17	1	1	80	0.84
5391009--5391837	59	13.9	59	83	5	851	33	19	14	32	1.92
5391010--5391837	119	6.9	118	83	3	858	33	19	14	32	1.92
5406758--5406788	2	15.5	2	100	0	62	51	0	0	48	1.00
5407615--5407666	26	2.0	26	88	0	77	48	7	9	34	1.65
5422830--5422865	15	2.4	15	90	9	56	41	2	0	55	1.14
5422965--5423012	22	2.1	23	81	14	55	37	14	10	37	1.81
5425068--5425114	25	2.0	23	91	8	76	51	6	0	42	1.27
5424933--5425294	104	3.3	103	82	12	374	56	4	0	39	1.22
5425207--5425396	39	4.7	38	66	23	102	58	2	0	38	1.14
5425257--5425338	21	4.1	19	78	12	76	52	1	0	46	1.08
5433725--5433762	14	2.6	15	79	8	51	57	0	2	39	1.12
5433720--5433757	14	2.9	14	84	7	53	60	0	2	36	1.11
5441682--5441714	2	16.5	2	93	0	57	45	0	0	54	0.99
5443384--5443451	36	1.9	35	93	3	118	60	4	4	30	1.36
5443451--5443492	16	2.6	17	82	14	54	23	2	14	59	1.47
5445011--5445070	30	2.1	29	81	6	68	31	8	21	38	1.83
5466990--5467033	21	2.1	21	83	8	54	61	0	11	27	1.30
5467393--5467479	35	2.5	35	86	0	120	34	5	34	25	1.80
5467366--5467516	35	4.4	35	73	11	109	36	7	33	22	1.82
5470912--5470944	15	2.2	15	100	0	66	33	24	6	36	1.80
5471754--5471833	41	2.0	41	87	0	115	32	23	8	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5471747--5471839	41	2.3	41	80	0	114	33	22	8	35	1.85
5476329--5476391	22	2.8	23	71	4	58	46	14	12	26	1.80
5477521--5477589	36	1.9	36	87	0	102	26	33	18	21	1.97
5478073--5478117	2	22.5	2	100	0	90	51	0	0	48	1.00
5479863--5479901	19	2.1	19	85	0	51	61	0	28	10	1.28
5481638--5481671	2	17.0	2	100	0	68	50	0	50	0	1.00
5482293--5482413	43	2.9	43	86	3	158	25	16	35	22	1.95
5485397--5485423	14	1.9	14	100	0	54	51	0	18	29	1.46
5486384--5486411	2	14.0	2	100	0	56	50	0	0	50	1.00
5490353--5490398	20	2.3	20	96	0	83	45	21	4	28	1.71
5492259--5492342	19	4.6	19	95	4	147	55	0	0	44	0.99
5497726--5497772	24	2.0	24	83	8	60	6	23	2	68	1.24
5501492--5501596	40	2.7	38	82	7	124	20	15	40	23	1.91
5512421--5512519	40	2.5	40	80	3	103	24	13	40	22	1.89
5525031--5525110	41	2.0	41	94	0	142	33	23	6	36	1.80
5532155--5532206	22	2.3	23	80	6	61	51	15	7	25	1.69
5532177--5532297	22	5.5	22	72	9	75	45	17	11	25	1.82
5532224--5532271	21	2.2	22	88	3	71	43	14	12	29	1.82
5533196--5533233	19	2.0	19	85	10	51	57	0	31	10	1.32
5539762--5539796	17	2.1	17	94	0	61	8	37	22	31	1.85
5540785--5540904	60	2.0	61	83	4	154	32	23	19	25	1.97
5543432--5543505	37	2.0	37	89	0	112	12	24	13	50	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5555940--5555968	15	1.9	15	100	0	58	31	27	6	34	1.83
5563829--5563910	42	2.0	42	82	0	101	21	29	20	28	1.98
5571391--5571477	42	2.1	42	91	0	138	24	34	18	22	1.96
5576462--5576542	23	3.6	22	70	9	65	48	18	9	23	1.78
5576457--5576542	45	1.9	45	88	4	129	47	18	10	23	1.79
5577442--5577479	19	2.0	19	85	10	51	57	0	31	10	1.32
5581591--5581719	2	65.0	2	87	4	172	49	3	1	44	1.27
5583196--5583257	22	2.9	21	85	7	79	3	32	0	64	1.09
5583656--5583701	23	2.0	23	82	0	56	54	4	0	41	1.20
5584122--5584216	25	3.8	25	78	18	92	48	0	2	49	1.13
5584109--5584175	15	4.8	15	71	23	56	47	1	2	47	1.26
5584062--5584194	40	3.2	40	77	11	126	49	1	2	46	1.23
5584123--5584209	15	5.9	15	68	29	53	48	0	2	49	1.13
5584163--5584215	27	2.0	26	92	3	88	47	0	1	50	1.12
5584147--5584216	15	4.4	15	73	25	63	48	0	1	50	1.09
5586565--5586675	49	2.3	49	96	0	204	24	20	34	20	1.97
5586925--5586983	21	2.8	21	76	0	64	32	23	22	22	1.98
5588952--5589066	44	2.6	44	95	0	203	24	8	38	28	1.85
5592439--5592652	62	3.5	62	77	6	182	31	20	22	25	1.98
5595915--5595947	15	2.2	15	89	10	50	66	9	18	6	1.40
5601465--5601552	46	1.9	46	97	0	167	37	11	13	37	1.81
5609028--5609094	24	2.7	25	73	23	61	50	7	2	38	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5613856--5613900	20	2.2	21	84	11	58	66	4	0	28	1.11
5615455--5615500	24	1.9	24	86	8	67	15	4	21	58	1.54
5618041--5618084	3	15.0	3	85	4	63	34	0	2	63	1.07
5622422--5622493	2	37.0	2	85	10	96	44	0	1	52	1.09
5630097--5630133	2	18.5	2	100	0	74	51	0	0	48	1.00
5635509--5635538	15	2.0	15	100	0	60	40	6	6	46	1.56
5638984--5639027	20	2.2	20	84	12	54	54	9	2	34	1.44
5647973--5648009	17	2.2	17	90	0	56	32	21	35	10	1.88
5658571--5658600	14	2.1	14	93	0	51	6	13	3	76	1.11
5658689--5658739	26	2.0	26	88	7	77	23	27	15	33	1.95
5660701--5660732	15	2.1	15	94	0	55	34	15	28	21	1.94
5667657--5667706	20	2.5	19	87	12	66	14	12	4	70	1.31
5667657--5667715	9	6.1	9	73	26	50	11	13	3	71	1.27
5668657--5668899	129	1.9	128	82	8	305	26	12	8	53	1.66
5670949--5670981	16	1.9	17	88	11	50	9	0	21	69	1.15
5674433--5674466	2	17.0	2	93	0	59	50	2	0	47	1.16
5677706--5677743	18	2.1	18	85	9	51	52	5	0	42	1.24
5679512--5679582	31	2.4	29	77	11	72	33	4	4	57	1.37
5682358--5682398	10	3.9	10	81	12	55	7	39	0	53	1.29
5686567--5686595	7	4.1	7	100	0	58	44	13	13	27	1.82
5687334--5687422	23	3.8	23	74	2	88	24	11	37	26	1.89
5687365--5687535	58	2.9	58	87	0	243	25	14	31	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5687743--5687950	31	6.7	31	88	0	299	27	16	16	39	1.90
5687740--5687950	93	2.3	93	91	0	341	27	16	17	39	1.90
5687932--5687960	15	1.9	15	100	0	58	34	17	6	41	1.76
5687907--5687996	46	2.0	46	88	4	137	28	14	14	42	1.85
5687947--5688112	31	5.4	31	90	0	242	26	16	18	38	1.92
5687808--5688089	139	2.0	139	88	0	411	26	17	16	39	1.90
5687839--5688058	108	2.0	108	86	1	307	28	16	15	40	1.89
5687777--5688112	170	2.0	170	90	0	528	26	17	16	39	1.91
5689509--5689855	145	2.4	145	83	2	412	29	19	19	31	1.96
5691997--5692068	31	2.3	29	77	13	72	25	34	18	22	1.96
5691907--5692500	118	5.0	118	88	1	834	28	29	20	21	1.98
5692178--5692363	56	3.2	56	66	16	153	27	31	21	19	1.97
5692229--5692307	31	2.5	31	80	8	88	27	34	15	22	1.94
5692320--5692388	31	2.2	31	84	5	86	30	30	20	18	1.97
5699292--5699513	31	7.2	31	89	0	318	39	17	14	28	1.89
5699890--5699929	9	4.4	9	83	0	53	35	7	37	20	1.81
5701017--5701051	18	2.1	17	89	10	54	51	0	0	48	1.00
5701171--5701208	2	19.0	2	94	0	67	2	0	47	50	1.15
5701278--5701316	17	2.4	17	82	4	53	64	12	0	23	1.28
5702057--5702104	2	24.0	2	100	0	96	50	0	0	50	1.00
5711011--5711274	132	2.0	133	85	0	359	17	38	14	29	1.89
5711144--5711366	119	1.9	120	83	2	297	18	36	14	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5717166--5717220	26	2.2	24	84	12	76	50	0	0	47	1.01
5717256--5717290	17	2.1	17	89	10	54	42	0	0	57	0.99
5729016--5729086	2	34.5	2	79	10	72	47	4	1	45	1.31
5734506--5734558	24	2.2	24	82	0	61	18	32	18	30	1.96
5736482--5736546	27	2.4	27	100	0	130	29	18	15	36	1.91
5736656--5736905	113	2.2	113	96	0	455	37	31	10	21	1.86
5741123--5741198	12	6.0	12	75	7	62	43	2	5	48	1.39
5745004--5745071	34	2.0	34	85	5	93	57	10	20	11	1.63
5751524--5751825	91	3.3	89	66	16	233	22	33	32	10	1.89
5751432--5751834	181	2.2	182	93	1	693	24	32	33	9	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59