genome.fa.s10.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  49  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17610490--17610524	18	1.9	19	88	11	56	5	11	5	77	1.12
17610622--17610669	14	3.4	14	80	5	53	27	20	10	41	1.85
17612587--17612631	23	2.0	23	95	0	81	44	11	24	20	1.83
17624522--17624569	24	2.0	25	87	4	71	14	2	6	77	1.06
17632506--17632530	13	1.9	13	100	0	50	80	0	20	0	0.72
17634960--17635019	30	2.1	29	81	6	68	30	6	23	40	1.80
17637577--17637627	15	3.4	15	83	0	66	31	3	15	49	1.63
17637662--17637701	5	8.2	5	86	5	55	40	2	22	35	1.68
17640088--17640147	30	2.1	29	81	6	68	30	6	23	40	1.80
17646543--17646599	21	2.8	20	76	5	60	38	14	15	31	1.87
17649640--17649756	37	3.2	37	91	0	189	29	11	37	21	1.88
17652761--17653064	168	1.8	168	87	1	457	30	19	17	32	1.95
17658132--17658171	19	2.0	20	95	4	73	30	0	27	42	1.56
17658132--17658180	19	2.5	19	87	9	55	32	0	26	40	1.56
17659262--17659286	13	1.9	13	100	0	50	52	0	0	48	1.00
17659509--17659741	116	2.0	117	94	0	414	21	21	33	23	1.97
17671893--17671949	2	29.0	2	85	3	80	49	5	0	45	1.24
17671983--17672036	2	27.5	2	92	3	92	48	0	0	51	1.00
17678369--17678411	16	2.5	17	85	7	61	41	20	2	34	1.65
17680149--17680199	2	25.5	2	100	0	102	49	0	0	50	1.00
17682701--17682853	26	6.0	27	70	13	90	32	16	9	41	1.81
17682716--17682829	25	4.5	24	75	8	75	34	15	9	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17682716--17682863	51	2.9	50	87	6	181	33	15	9	41	1.80
17685658--17685721	28	2.2	29	83	2	76	45	18	6	29	1.74
17689361--17689493	67	2.0	67	93	0	230	26	21	14	38	1.91
17693943--17693994	25	2.1	25	88	0	77	44	17	11	26	1.83
17696883--17696938	22	2.5	22	72	18	53	57	1	3	37	1.27
17697114--17697165	21	2.5	20	75	12	50	46	5	0	48	1.26
17697413--17697467	23	2.4	23	100	0	110	49	14	3	32	1.61
17705703--17705754	16	2.9	18	75	21	56	40	0	0	59	0.97
17705710--17705754	19	2.3	18	88	11	63	33	0	0	66	0.92
17706787--17706832	17	2.6	18	75	6	58	47	0	4	47	1.21
17709717--17709872	79	2.0	79	84	2	206	34	10	17	37	1.84
17717501--17717650	75	2.0	74	98	1	291	17	21	10	50	1.76
17722486--17722534	2	24.5	2	100	0	98	51	0	0	48	1.00
17731202--17731260	28	2.1	28	84	3	75	55	3	8	32	1.46
17737554--17737605	26	2.0	26	85	7	70	32	0	21	46	1.52
17737650--17737688	13	3.0	13	81	11	53	25	0	28	46	1.53
17737526--17737980	84	5.4	84	91	0	696	37	4	16	41	1.69
17737819--17737860	13	3.3	13	87	9	52	33	0	16	50	1.46
17737902--17737934	13	2.5	13	90	9	50	39	0	18	42	1.50
17740664--17740717	25	2.2	25	90	6	83	38	0	11	50	1.38
17744833--17744871	18	2.2	18	100	0	78	46	0	15	38	1.46
17763311--17763351	17	2.3	18	87	8	57	68	0	2	29	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17763469--17763514	1	46.0	1	95	0	83	2	0	0	97	0.15
17763468--17763519	10	5.4	10	90	4	72	7	0	0	92	0.39
17771720--17771794	28	2.7	28	81	2	80	38	21	6	33	1.79
17771842--17771879	19	2.0	19	100	0	76	42	31	0	26	1.56
17774763--17774814	26	2.0	26	85	7	70	32	0	21	46	1.52
17774859--17774897	13	3.0	13	81	11	53	25	0	28	46	1.53
17774735--17775181	84	5.4	84	85	6	601	36	4	16	41	1.69
17774735--17775181	161	2.7	162	88	4	630	36	4	16	41	1.69
17774945--17775102	77	2.1	77	87	2	228	36	3	16	43	1.66
17775103--17775135	13	2.5	13	90	9	50	39	0	18	42	1.50
17777846--17777899	25	2.2	25	90	6	83	38	0	11	50	1.38
17780983--17781087	31	3.4	30	76	5	102	24	26	20	27	1.99
17784579--17784821	31	7.8	31	85	5	339	38	19	16	25	1.92
17790932--17791095	87	1.9	87	80	8	192	63	3	9	23	1.40
17793812--17793836	8	3.1	8	100	0	50	24	12	0	64	1.27
17794305--17794366	29	2.1	30	87	3	90	41	14	0	43	1.45
17799204--17799245	20	2.1	20	82	8	50	40	0	0	59	0.97
17805443--17806051	307	2.0	308	94	0	1060	34	10	7	47	1.66
17821649--17821673	13	1.9	13	100	0	50	72	16	4	8	1.24
17823414--17823439	1	26.0	1	100	0	52	0	100	0	0	0.00
17826757--17826811	28	2.0	28	96	0	101	34	9	23	32	1.86
17828305--17828427	62	2.0	62	91	0	201	24	29	12	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17834698--17834735	5	7.4	5	96	3	67	57	0	0	42	0.98
17847520--17847561	12	3.3	13	83	9	52	2	21	0	76	0.90
17847882--17847930	17	2.9	17	87	0	71	18	4	12	65	1.41
17848691--17848732	12	3.6	12	84	15	61	78	0	0	21	0.75
17848683--17848733	17	2.9	17	85	2	66	76	0	1	21	0.88
17850286--17850331	23	2.0	22	84	16	58	69	0	4	26	1.07
17862015--17862551	59	9.0	59	85	6	670	31	11	21	36	1.88
17862015--17862551	237	2.2	241	85	5	723	31	11	21	36	1.88
17862344--17862614	121	2.3	114	79	9	273	32	11	18	36	1.87
17862755--17862814	19	3.3	18	84	13	70	75	0	1	23	0.90
17862755--17862805	12	4.2	12	78	14	59	72	0	1	25	0.95
17862756--17862813	17	3.2	17	79	18	64	75	0	1	22	0.89
17863139--17863182	24	1.9	22	86	9	61	72	18	4	4	1.19
17878509--17878541	16	2.0	17	88	5	50	36	33	12	18	1.88
17886888--17886922	16	2.1	17	89	5	54	62	0	2	34	1.10
17887281--17887360	2	42.0	2	84	9	96	48	1	0	48	1.09
17887496--17887522	4	6.8	4	100	0	54	77	0	0	22	0.76
17887855--17887986	67	2.0	67	95	3	239	37	7	15	39	1.76
17897644--17897768	62	2.0	61	95	1	223	36	17	4	40	1.71
17906416--17906446	2	15.5	2	93	0	53	45	0	3	51	1.17
17911060--17911107	25	2.0	23	92	8	78	70	0	4	25	1.04
17911070--17911108	20	2.1	18	85	9	51	71	0	2	25	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17912179--17912411	115	2.0	115	89	0	358	34	20	9	35	1.86
17919401--17919440	20	1.9	22	90	10	66	30	0	7	62	1.23
17920031--17920084	20	2.7	20	85	2	63	72	0	24	3	1.01
17925430--17925464	18	1.9	18	94	0	61	51	17	2	28	1.59
17928001--17928118	59	2.0	59	96	0	218	35	4	29	30	1.77
17929560--17929663	34	3.0	34	73	6	111	23	12	37	26	1.90
17929506--17929640	35	3.9	35	70	8	87	23	8	35	31	1.86
17929772--17929822	13	4.1	13	77	10	52	74	0	23	1	0.92
17930538--17930575	19	2.0	19	89	0	58	31	0	26	42	1.56
17937004--17937041	13	3.2	12	88	7	51	57	0	21	21	1.40
17937558--17937626	35	1.9	36	85	8	97	24	17	17	40	1.90
17939173--17939219	12	3.7	12	83	13	58	68	2	0	29	1.02
17946569--17946593	13	1.9	13	100	0	50	48	8	0	44	1.32
17959253--17959297	23	2.0	23	86	0	63	68	0	22	8	1.16
17966608--17966642	9	3.9	9	88	0	52	28	2	0	68	1.04
17974222--17974264	19	2.3	19	92	4	70	72	0	2	25	0.97
17976919--17976981	31	2.1	31	90	3	101	26	9	15	47	1.76
17978103--17978212	35	3.1	35	82	0	139	38	16	4	40	1.69
17978088--17978218	70	1.9	70	81	0	163	36	16	5	41	1.72
17978118--17978237	35	3.4	34	81	2	123	33	13	7	45	1.71
17982340--17982389	24	2.1	25	85	7	68	46	20	4	30	1.69
17983347--17983384	12	3.2	12	96	3	69	68	0	13	18	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17986735--17986781	24	2.0	24	95	0	85	36	19	10	34	1.86
17987223--17987270	17	2.8	17	87	3	60	39	8	10	41	1.69
17990811--17990874	30	2.1	30	91	0	101	35	12	6	45	1.67
17997035--17997065	16	1.9	16	93	0	53	22	3	19	54	1.58
18004478--18004543	2	33.0	2	96	0	123	0	48	1	50	1.10
18005719--18005773	27	2.0	27	89	0	83	40	12	14	32	1.84
18006185--18006252	29	2.3	29	80	5	75	41	11	10	36	1.76
18005979--18006252	141	1.9	139	80	9	313	41	12	13	31	1.83
18006942--18007152	116	1.8	116	86	0	305	34	16	21	27	1.95
18013653--18013823	85	2.0	85	82	6	204	42	10	36	11	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59