genome.fa.s10.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  51  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18473658--18473689	17	1.9	16	93	6	55	81	3	0	15	0.82
18473698--18473756	32	1.9	29	89	6	82	42	3	10	42	1.55
18486813--18487254	216	2.0	216	89	0	679	34	18	21	24	1.96
18489478--18489557	36	2.4	33	83	8	99	36	10	20	33	1.86
18489550--18489618	36	1.9	36	93	0	120	28	11	18	40	1.86
18491014--18491055	16	2.6	17	82	14	54	28	0	0	71	0.86
18491018--18491096	23	3.4	23	74	8	70	21	5	0	73	1.02
18491033--18491097	26	2.6	25	78	4	67	18	6	0	75	1.00
18491009--18491099	24	4.0	23	75	17	75	23	5	0	71	1.06
18491683--18491708	2	13.0	2	100	0	52	50	0	0	50	1.00
18493350--18493386	2	18.5	2	100	0	74	51	48	0	0	1.00
18493387--18493425	8	4.9	8	90	0	51	35	0	12	51	1.40
18493395--18493425	12	2.6	12	89	0	53	32	0	16	51	1.44
18493486--18493881	131	3.0	130	88	4	557	29	19	20	30	1.97
18494846--18494895	16	2.9	18	77	22	54	34	2	22	42	1.65
18497837--18497872	18	2.0	18	88	0	54	25	19	0	55	1.43
18507970--18508022	27	2.0	26	96	0	88	69	7	1	18	1.21
18519062--18519262	99	2.0	99	90	3	316	34	15	18	30	1.92
18519508--18519553	17	2.7	17	81	18	60	34	13	10	41	1.79
18531060--18531092	13	2.4	14	85	10	50	30	3	3	63	1.24
18533501--18533550	12	4.3	11	82	10	55	4	16	2	78	1.00
18533502--18533550	11	4.5	11	80	10	55	4	14	2	79	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18533943--18533967	10	2.5	10	100	0	50	92	0	8	0	0.40
18537622--18537686	24	2.8	24	84	11	73	20	4	3	72	1.16
18538121--18538160	12	3.1	12	86	13	53	35	0	0	65	0.93
18538131--18538171	15	2.9	15	85	7	50	34	2	0	63	1.08
18553468--18553704	121	2.0	121	87	8	349	32	17	17	32	1.93
18555301--18555334	12	2.7	13	86	9	52	55	8	0	35	1.31
18557932--18557956	13	1.9	13	100	0	50	44	0	8	48	1.32
18559302--18559334	11	3.0	11	95	0	57	27	0	24	48	1.51
18559304--18559342	11	3.5	11	89	0	51	33	2	15	48	1.58
18562535--18562578	16	2.7	16	78	3	52	40	0	2	56	1.11
18563890--18563967	29	2.4	33	79	20	110	19	48	10	21	1.78
18563901--18563971	29	2.4	29	100	0	142	18	47	14	19	1.82
18579899--18579939	21	2.0	21	85	9	57	39	2	7	51	1.43
18587115--18587690	171	3.4	169	80	5	568	34	12	13	39	1.83
18588308--18588332	2	12.5	2	100	0	50	48	0	0	52	1.00
18588490--18588531	21	2.0	20	86	4	57	35	7	2	54	1.41
18589498--18589531	18	1.9	17	88	5	50	64	5	2	26	1.30
18591787--18591825	8	5.0	8	84	3	53	71	0	0	28	0.86
18591782--18591825	16	2.9	16	83	6	56	68	0	0	31	0.90
18596411--18596436	3	8.7	3	100	0	52	34	0	0	65	0.93
18621917--18621957	21	2.0	21	85	0	55	34	9	9	46	1.70
18626750--18626786	2	18.5	2	100	0	74	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18628887--18628915	2	14.5	2	100	0	58	51	0	0	48	1.00
18630990--18632284	187	6.9	186	83	3	1420	40	12	12	33	1.81
18632540--18633030	187	2.7	185	82	5	548	39	12	12	35	1.82
18635407--18635442	13	2.7	13	91	4	54	16	2	2	77	1.00
18636495--18636539	17	2.8	17	75	18	51	66	0	2	31	1.04
18641889--18641950	31	2.0	31	96	0	115	25	17	9	46	1.79
18642927--18643026	17	5.9	17	70	15	57	11	11	2	76	1.11
18644716--18644966	94	2.7	94	91	2	400	35	17	15	32	1.91
18646187--18646256	35	2.0	36	88	2	106	25	21	4	48	1.68
18647176--18647257	3	29.0	3	74	22	63	28	2	1	68	1.10
18647176--18647303	12	11.5	11	72	18	72	26	4	0	67	1.15
18647210--18647253	23	2.0	23	86	13	65	29	2	0	68	1.02
18647237--18647279	23	1.9	22	85	4	59	20	6	0	72	1.08
18647246--18647303	27	2.2	27	85	11	77	22	6	0	70	1.10
18649566--18650109	38	14.1	38	86	7	722	43	20	13	22	1.87
18649566--18650109	75	7.1	75	88	5	748	43	20	13	22	1.87
18662080--18662144	3	23.0	3	75	20	52	29	1	1	67	1.09
18662078--18662146	19	3.7	19	75	23	74	28	1	1	68	1.07
18662078--18662146	28	2.5	27	77	11	77	28	1	1	68	1.07
18662294--18662354	17	3.2	19	71	15	63	18	4	1	75	1.06
18662293--18662355	13	4.9	13	74	18	60	19	4	1	74	1.08
18662563--18662612	3	16.7	3	80	19	52	30	0	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18662562--18662608	20	2.3	20	85	7	60	29	0	0	70	0.88
18662556--18662617	26	2.3	27	86	10	92	29	0	0	70	0.87
18664793--18664842	24	2.1	24	85	3	66	24	12	0	64	1.27
18669983--18670028	10	4.7	10	82	10	51	0	30	0	69	0.89
18670058--18670101	18	2.4	18	84	0	61	0	47	0	52	1.00
18670596--18670630	15	2.4	14	90	9	52	11	0	8	80	0.92
18672999--18674444	186	7.8	187	83	4	1629	42	13	12	32	1.81
18673056--18674444	559	2.5	558	83	4	1725	42	13	12	32	1.81
18678108--18678142	16	2.2	16	89	0	52	48	8	2	40	1.49
18679362--18679399	19	2.0	19	100	0	76	42	31	0	26	1.56
18680198--18680270	28	2.6	28	86	0	110	45	17	19	17	1.86
18680285--18680361	30	2.6	30	100	0	154	35	15	22	27	1.94
18680362--18680433	28	2.5	30	82	8	78	34	15	19	30	1.93
18680336--18680495	73	2.2	73	84	3	214	35	16	18	30	1.93
18695719--18695780	28	2.1	29	82	5	72	30	8	22	38	1.83
18704624--18704747	38	3.2	38	81	13	146	21	37	10	29	1.87
18707901--18707929	14	2.1	14	100	0	58	27	6	27	37	1.82
18716213--18716244	15	2.1	16	88	11	50	18	6	0	75	1.01
18717431--18717538	56	2.0	54	87	3	153	33	18	19	28	1.96
18722574--18722611	20	2.0	20	90	10	62	50	0	0	50	1.00
18724184--18724353	85	2.0	85	81	5	202	38	12	14	34	1.84
18734597--18734654	2	29.5	2	78	3	64	44	0	6	48	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18735952--18736006	29	1.9	28	85	10	76	52	5	12	29	1.61
18743619--18743744	46	2.8	45	89	8	184	33	7	6	53	1.54
18743703--18743756	18	2.8	20	83	11	76	35	3	5	55	1.41
18743806--18743879	19	3.8	20	87	7	89	35	4	5	55	1.42
18743703--18743929	123	1.9	123	94	3	406	33	3	5	56	1.41
18743823--18744074	40	6.6	37	65	24	125	33	4	7	55	1.47
18743824--18744015	74	2.6	75	86	7	282	32	5	5	56	1.45
18743637--18743948	123	2.6	118	77	11	348	33	5	6	55	1.47
18743682--18744067	196	2.0	186	84	10	496	33	4	6	54	1.47
18743979--18744074	20	4.8	20	75	11	90	37	3	8	51	1.48
18744388--18744435	25	2.0	22	88	11	69	29	0	2	68	1.01
18760454--18760509	8	7.2	8	75	22	57	48	0	3	48	1.19
18760473--18760527	21	2.5	22	82	11	67	45	1	0	52	1.11
18760454--18760509	15	3.7	15	81	11	69	48	0	3	48	1.19
18760474--18760560	23	3.9	22	70	11	61	44	3	1	50	1.26
18761444--18761509	29	2.2	31	83	8	91	34	15	4	45	1.66
18767772--18767800	15	2.0	15	93	6	51	44	0	0	55	0.99
18767779--18767831	22	2.2	24	87	9	74	58	0	1	39	1.09
18767796--18767850	22	2.5	22	84	3	65	56	0	3	40	1.17
18767782--18767870	30	3.2	28	76	19	89	52	2	2	42	1.26
18767781--18767892	46	2.2	52	83	10	137	51	1	1	44	1.22
18767804--18767893	22	4.0	23	68	12	60	51	2	1	45	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18774610--18774684	5	15.4	5	80	13	59	25	0	0	74	0.82
18774610--18774684	14	5.4	14	76	17	68	25	0	0	74	0.82
18774610--18774684	24	3.2	24	85	9	95	25	0	0	74	0.82
18782837--18782893	12	4.9	12	72	23	50	56	7	0	36	1.27
18783974--18784013	20	2.0	21	90	5	64	32	12	10	45	1.75
18785611--18785661	16	3.1	16	78	10	50	33	3	3	58	1.35
18810350--18810518	85	2.0	84	96	2	304	37	23	4	33	1.74
18817016--18817055	6	6.8	6	86	13	57	32	0	0	67	0.91
18819965--18820220	35	7.3	35	82	5	286	43	14	7	34	1.72
18819965--18820213	107	2.4	105	83	4	317	43	14	7	34	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59