genome.fa.s10.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  18  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6520114--6520246	40	3.6	39	70	21	126	54	4	6	33	1.47
6520103--6520245	70	2.0	70	98	0	277	55	4	5	34	1.45
6520727--6520776	21	2.4	21	86	3	66	60	0	0	40	0.97
6525912--6525970	2	29.5	2	89	0	64	40	1	8	49	1.43
6529180--6529212	2	16.5	2	100	0	66	48	0	0	51	1.00
6534610--6534655	20	2.3	20	92	0	74	30	4	19	45	1.70
6534700--6534752	28	1.9	27	88	3	79	30	18	22	28	1.98
6534700--6534758	28	2.1	28	84	6	75	30	20	23	25	1.98
6535893--6535917	13	1.9	13	100	0	50	44	0	8	48	1.32
6538846--6538891	2	23.0	2	90	0	74	45	4	0	50	1.21
6544239--6544292	19	2.8	20	77	8	58	31	0	11	57	1.34
6544255--6544292	20	1.9	20	88	0	58	34	0	10	55	1.34
6547853--6547922	14	4.9	14	76	1	68	32	2	22	41	1.69
6547854--6547923	28	2.5	28	85	2	86	32	2	22	41	1.69
6559295--6559333	20	1.9	21	89	5	62	20	2	7	69	1.26
6564749--6564823	36	2.1	36	94	0	132	28	9	29	33	1.88
6568224--6568250	14	1.9	14	100	0	54	29	0	11	59	1.32
6569239--6569267	15	2.0	15	93	6	51	13	13	20	51	1.75
6573937--6573966	11	2.7	11	100	0	60	40	0	0	60	0.97
6573954--6573996	18	2.3	19	88	4	61	37	2	0	60	1.10
6579387--6579435	2	24.5	2	91	0	80	48	0	2	48	1.12
6580648--6580690	19	2.3	18	88	11	61	53	0	2	44	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6581088--6581127	19	2.1	19	85	0	53	20	37	7	35	1.81
6581216--6581270	20	2.7	20	85	5	65	65	0	34	0	0.93
6589521--6589603	29	2.9	29	77	10	89	25	21	14	38	1.91
6589527--6589621	29	3.3	29	73	16	83	22	20	14	43	1.88
6589537--6589628	29	3.2	29	73	23	86	26	18	16	39	1.91
6591110--6591134	13	1.9	13	100	0	50	48	8	0	44	1.32
6601492--6601556	28	2.4	28	92	2	105	24	23	15	36	1.93
6602866--6602938	34	2.1	34	90	5	112	35	28	6	28	1.83
6602874--6602949	34	2.3	32	84	10	93	32	30	6	30	1.83
6605418--6605456	18	2.2	19	86	9	55	51	2	2	43	1.29
6609282--6609314	17	1.9	17	88	11	50	27	3	21	48	1.64
6623307--6623332	2	13.0	2	100	0	52	50	0	0	50	1.00
6630743--6630800	30	1.9	30	89	6	91	48	6	10	34	1.64
6654524--6654596	32	2.3	32	84	11	89	0	35	1	63	1.04
6656107--6656141	18	1.9	18	94	0	61	0	37	0	62	0.95
6662710--6662749	15	2.7	15	85	14	57	37	0	0	62	0.95
6667859--6667891	2	16.5	2	100	0	66	51	48	0	0	1.00
6667885--6667929	24	2.0	23	87	12	67	42	13	13	28	1.82
6675304--6675541	118	2.0	117	94	0	413	31	17	21	29	1.96
6677595--6677673	40	2.0	40	94	0	140	17	22	25	34	1.96
6679971--6680049	40	2.0	40	87	5	115	20	24	21	34	1.97
6680471--6680549	40	2.0	40	92	0	131	34	24	22	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6682969--6683047	40	2.0	40	97	0	149	17	21	25	35	1.95
6684796--6684854	28	2.0	29	83	6	75	37	22	16	23	1.94
6685099--6685139	21	1.9	22	90	5	66	51	7	24	17	1.70
6685099--6685143	20	2.2	21	84	11	58	55	6	22	15	1.63
6685097--6685144	21	2.3	20	79	10	60	56	6	22	14	1.61
6689888--6690268	199	1.9	199	87	1	557	26	18	18	35	1.95
6690358--6690518	84	1.9	84	85	2	225	27	10	21	40	1.86
6702236--6702260	13	1.9	13	100	0	50	48	0	0	52	1.00
6709698--6709743	20	2.3	20	96	0	83	28	4	21	45	1.71
6709788--6709840	28	1.9	27	88	3	79	33	20	18	26	1.96
6712809--6712871	28	2.2	28	100	0	126	46	15	6	31	1.71
6714071--6714098	14	2.0	14	100	0	56	50	7	0	42	1.30
6714302--6714341	2	20.5	2	89	5	64	47	2	0	50	1.14
6714878--6714907	6	5.0	6	91	0	51	20	0	46	33	1.51
6722203--6722233	2	16.0	2	93	6	55	51	0	0	48	1.00
6726905--6727036	43	3.1	43	78	0	156	20	32	19	27	1.97
6736608--6736716	43	2.5	43	85	2	139	22	20	38	18	1.93
6737033--6737090	22	2.6	22	91	0	98	22	22	29	25	1.99
6737130--6737232	39	2.6	39	75	7	100	24	16	20	38	1.92
6751321--6751380	11	5.8	11	74	18	58	0	33	0	66	0.92
6751325--6751380	20	2.8	20	91	2	85	0	33	0	66	0.92
6751903--6751940	19	2.0	19	94	0	67	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6774719--6774743	13	1.9	13	100	0	50	52	0	0	48	1.00
6785332--6785367	2	18.0	2	94	0	63	47	0	0	52	1.00
6785593--6785626	2	17.5	2	93	6	61	50	0	0	50	1.00
6785811--6785887	8	9.5	8	70	13	50	54	5	0	40	1.23
6786812--6786851	20	2.0	20	100	0	80	45	25	0	30	1.54
6791005--6791039	14	2.4	15	90	4	54	40	0	14	45	1.45
6800351--6800393	21	2.0	21	81	0	50	30	9	34	25	1.87
6808531--6808573	21	2.0	21	81	0	50	30	9	34	25	1.87
6820633--6820725	42	2.2	42	88	0	141	21	21	32	24	1.98
6830446--6830554	43	2.5	43	82	8	141	25	19	36	18	1.94
6830566--6830627	23	2.6	23	89	7	88	22	1	41	33	1.64
6839887--6839935	2	24.5	2	100	0	98	0	0	48	51	1.00
6839981--6840033	2	26.5	2	96	0	97	0	1	49	49	1.12
6846036--6846166	35	3.8	35	73	6	124	25	12	27	35	1.91
6846031--6846166	67	2.0	67	90	2	211	24	11	27	36	1.90
6846031--6846131	32	3.1	32	72	8	103	23	11	25	38	1.89
6847051--6847091	21	2.1	19	90	9	64	26	9	24	39	1.86
6852415--6852441	14	1.9	14	100	0	54	59	11	0	29	1.32
6857410--6857508	35	2.9	35	69	11	89	28	13	24	34	1.93
6857381--6857508	67	1.9	68	88	4	197	28	11	24	35	1.90
6857400--6857535	67	2.0	67	85	5	186	25	11	25	36	1.90
6861920--6861981	31	2.0	31	100	0	124	29	19	12	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6862927--6863027	36	2.8	36	86	0	139	20	38	18	21	1.93
6870815--6870868	16	3.2	17	84	10	67	66	0	0	33	0.92
6877205--6877258	28	2.0	27	85	3	72	25	20	20	33	1.97
6890392--6890431	2	20.0	2	100	0	80	50	0	0	50	1.00
6919904--6919929	13	2.0	13	100	0	52	46	0	7	46	1.31
6922200--6922247	2	24.0	2	100	0	96	50	0	0	50	1.00
6922463--6922492	2	15.5	2	93	6	53	50	0	0	50	1.00
6922755--6922787	15	2.1	17	88	11	52	54	12	0	33	1.37
6923972--6924144	48	3.8	47	75	12	164	23	12	26	37	1.91
6923984--6924147	88	1.9	87	89	1	256	24	12	25	37	1.91
6924750--6924839	30	3.0	30	88	0	144	27	15	26	30	1.96
6925475--6925906	110	3.8	109	81	9	442	17	10	27	44	1.81
6925689--6925945	118	2.2	117	83	2	336	18	12	27	42	1.85
6925689--6925978	118	2.5	116	80	6	323	17	12	27	42	1.85
6935284--6935335	26	2.0	26	88	0	77	57	7	11	23	1.59
6939437--6939484	24	2.0	24	95	0	87	20	27	20	31	1.98
6939652--6939701	24	2.1	24	84	0	64	36	20	44	0	1.52
6940063--6940092	15	1.9	16	93	6	53	73	3	0	23	0.98
6942573--6942695	61	2.0	61	95	0	219	33	26	7	33	1.84
6946679--6946742	28	2.3	28	94	0	110	37	26	20	15	1.92
6947131--6947203	20	3.6	20	72	7	67	31	15	19	34	1.92
6947130--6947180	21	2.5	20	83	3	66	33	17	19	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6949836--6949915	21	3.9	21	74	11	76	38	12	12	36	1.81
6950927--6951088	68	2.4	68	81	4	202	27	23	18	30	1.98
6953312--6953353	10	4.0	11	84	9	52	21	7	0	71	1.09
6954651--6954680	11	2.6	11	94	5	51	26	0	3	70	1.03
6960938--6960987	2	25.0	2	95	0	91	48	0	2	50	1.12
6961971--6962050	24	3.2	24	76	15	81	2	17	0	80	0.83
6961983--6962031	14	3.5	14	83	10	64	2	14	0	83	0.73
6961971--6962033	33	1.9	33	83	6	83	1	17	0	80	0.78
6961970--6962050	28	2.8	28	78	14	85	2	18	0	79	0.85
6961970--6962038	14	4.9	14	79	12	61	1	20	0	78	0.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59