genome.fa.s10.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr10
Parameters: 2 7 7 80 10 50 1000
Length:  21822658

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   

This is table  56  of  59  ( 7025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20341320--20341371	26	2.0	27	85	11	72	73	0	0	26	0.84
20342214--20342729	258	2.0	258	99	0	1016	34	21	12	30	1.91
20343237--20343495	129	2.0	130	89	0	394	28	30	17	23	1.97
20347603--20347646	21	2.1	21	95	0	79	34	13	13	38	1.84
20348286--20348369	40	2.1	40	95	0	150	29	9	11	48	1.71
20348687--20348713	12	2.2	12	100	0	54	40	7	14	37	1.74
20350641--20350797	77	2.1	73	86	4	224	28	17	15	38	1.90
20354386--20354429	21	2.1	21	95	0	79	36	15	13	34	1.87
20355140--20355228	5	18.0	5	91	3	137	82	0	0	17	0.68
20356041--20356065	12	2.1	12	100	0	50	84	0	0	16	0.63
20404829--20404886	8	7.2	8	86	0	62	41	1	12	44	1.51
20404831--20404896	24	2.8	24	80	0	69	42	3	12	42	1.57
20408657--20408700	2	22.5	2	90	4	72	47	0	2	50	1.13
20408935--20408981	19	2.5	19	82	6	51	59	0	2	38	1.09
20410029--20410066	19	2.0	19	94	0	67	28	0	28	42	1.56
20415951--20415997	17	2.6	18	80	10	60	57	0	8	34	1.29
20418324--20418441	41	2.9	41	92	2	175	29	12	6	50	1.66
20418336--20418441	41	2.6	41	95	3	187	31	13	5	50	1.64
20420321--20420364	21	2.1	21	95	0	79	34	13	13	38	1.84
20424257--20424487	77	3.0	77	94	0	399	28	17	15	38	1.90
20427719--20427762	21	2.1	21	91	0	70	36	18	13	31	1.90
20428037--20428193	85	1.9	84	94	2	271	25	30	22	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20436128--20436182	28	2.0	28	88	0	83	52	14	7	25	1.67
20439643--20439800	78	2.0	78	92	0	262	44	20	9	25	1.81
20441887--20441963	38	2.0	38	97	0	145	25	11	10	51	1.70
20446825--20446867	19	2.3	18	80	4	50	44	0	6	48	1.29
20457208--20457327	45	2.7	45	84	0	159	34	17	18	30	1.94
20457251--20457390	69	2.0	70	85	1	192	37	17	16	27	1.92
20457320--20457432	46	2.5	45	83	1	145	38	19	15	27	1.91
20457216--20457492	115	2.4	114	82	1	329	35	17	17	29	1.93
20457320--20457447	45	2.8	46	83	1	150	36	19	14	28	1.92
20457411--20457461	24	2.1	24	92	0	84	41	17	11	29	1.85
20457366--20457579	69	3.1	69	76	6	238	33	18	19	28	1.95
20457421--20457472	24	2.2	24	85	0	68	42	15	15	26	1.87
20457469--20457514	21	2.2	21	88	0	65	19	17	28	34	1.94
20457488--20457600	45	2.5	45	86	0	163	28	18	23	29	1.98
20457590--20457671	29	2.8	30	84	3	112	41	9	10	37	1.73
20457590--20457684	29	3.3	29	82	4	104	38	11	10	38	1.76
20462074--20462098	13	1.9	13	100	0	50	0	24	0	76	0.80
20462138--20462170	13	2.6	13	95	4	59	0	15	0	84	0.61
20462141--20462174	7	5.1	7	96	3	54	0	14	0	85	0.60
20462138--20462170	6	5.3	6	92	7	57	0	15	0	84	0.61
20462210--20462246	10	3.3	12	82	17	53	0	32	0	67	0.91
20464458--20464503	12	3.7	13	82	11	60	0	30	2	67	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20479289--20480119	86	9.7	86	84	2	997	28	32	17	22	1.96
20483899--20484110	31	6.8	31	89	2	327	39	17	15	27	1.90
20489653--20489857	83	2.5	83	96	0	374	44	10	8	36	1.70
20489873--20489903	15	2.1	14	94	5	53	32	16	0	51	1.44
20498419--20498467	2	26.0	2	84	12	68	46	0	2	51	1.12
20500075--20500104	15	1.9	16	93	6	53	63	6	23	6	1.43
20517211--20517253	23	1.9	22	86	13	61	48	0	0	51	1.00
20518987--20519066	26	3.1	25	85	3	88	18	18	17	45	1.86
20518999--20519071	26	2.8	26	85	4	94	19	20	19	41	1.91
20519397--20519530	41	3.2	41	76	6	144	30	5	8	55	1.53
20522485--20522530	15	2.9	15	81	15	56	23	2	0	73	0.94
20522485--20522527	16	2.4	17	81	18	52	23	2	0	74	0.93
20530906--20530978	26	2.8	25	89	4	92	19	21	20	38	1.94
20534570--20534594	3	8.3	3	100	0	50	68	0	0	32	0.90
20537809--20537843	18	1.9	18	88	0	52	74	0	0	25	0.82
20540366--20540430	33	2.0	33	84	0	85	47	20	1	30	1.59
20542087--20542138	21	2.5	21	78	3	61	53	5	32	7	1.53
20544724--20544787	30	2.1	30	85	5	85	35	10	3	50	1.54
20545199--20545232	3	11.3	3	87	0	50	38	0	26	35	1.57
20545196--20545232	12	3.1	12	92	0	56	40	0	24	35	1.55
20550082--20550106	3	8.3	3	100	0	50	64	0	0	36	0.94
20554597--20554643	23	1.9	25	87	12	71	44	23	0	31	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20571020--20571511	167	2.9	167	82	2	542	34	18	16	30	1.93
20574219--20574734	167	3.1	167	78	6	501	35	18	16	30	1.92
20576750--20577155	102	4.0	102	98	0	767	18	34	12	34	1.89
20590059--20590096	2	19.0	2	100	0	76	50	0	0	50	1.00
20599743--20599784	21	2.0	21	86	9	59	52	21	9	16	1.72
20614662--20614707	23	2.0	23	95	0	83	39	13	10	36	1.79
20633766--20633798	16	2.1	16	100	0	66	33	12	0	54	1.37
20651775--20651836	6	10.3	6	92	0	79	35	0	43	20	1.53
20651784--20651845	3	20.7	3	80	6	72	35	0	38	25	1.56
20651775--20651836	18	3.4	18	88	0	88	35	0	43	20	1.53
20657008--20657063	29	1.9	29	82	7	69	62	3	0	33	1.12
20666280--20666337	2	29.0	2	100	0	116	50	0	0	50	1.00
20675629--20675675	25	2.0	25	84	12	64	36	2	2	59	1.21
20683007--20683066	30	2.1	29	81	6	68	31	8	21	38	1.83
20709484--20709553	36	1.9	36	85	0	95	22	25	20	31	1.98
20716295--20716426	35	3.8	34	76	8	122	45	9	13	31	1.76
20716590--20716662	29	2.6	29	84	2	94	13	15	9	61	1.56
20716590--20716676	29	3.0	29	81	6	70	14	16	9	59	1.59
20722626--20722880	129	2.0	129	95	0	456	30	21	17	30	1.96
20724513--20724669	48	3.3	48	85	3	194	34	10	14	40	1.81
20724508--20724716	96	2.2	93	80	6	233	33	11	15	39	1.84
20724655--20724780	49	2.6	48	83	5	164	35	8	15	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20725162--20725191	16	1.9	15	93	6	51	36	16	13	33	1.88
20729214--20729268	27	1.9	27	82	10	65	3	21	7	67	1.31
20735469--20735629	73	2.2	73	85	1	205	26	23	13	36	1.92
20745525--20745655	53	2.4	53	86	6	156	20	12	22	44	1.85
20745523--20745655	28	4.9	27	91	2	205	21	12	22	44	1.85
20745706--20745769	27	2.4	27	86	0	83	35	18	10	34	1.86
20747389--20747471	36	2.3	36	83	4	96	34	19	26	19	1.95
20749689--20749733	20	2.2	20	80	7	56	57	2	2	37	1.23
20750640--20750674	11	3.2	11	91	0	61	28	14	8	48	1.73
20760001--20760409	210	1.9	210	80	4	477	29	22	21	25	1.99
20766534--20766571	19	2.0	19	94	0	67	42	28	0	28	1.56
20776053--20776090	19	2.0	19	94	0	67	28	0	28	42	1.56
20777644--20777673	2	15.0	2	100	0	60	50	0	0	50	1.00
20779119--20779177	27	2.1	28	81	9	68	37	18	13	30	1.90
20783684--20783708	13	1.9	13	100	0	50	52	0	0	48	1.00
20785016--20785099	41	2.0	41	97	0	159	35	11	17	34	1.87
20787186--20787230	23	2.0	23	83	12	58	71	8	2	17	1.23
20787648--20787694	23	2.0	23	91	0	76	19	8	8	63	1.48
20788025--20788182	57	2.8	55	84	4	149	43	15	12	28	1.83
20788048--20788183	57	2.4	57	86	2	184	41	16	13	28	1.86
20788401--20788440	18	2.2	18	86	0	53	37	17	17	27	1.92
20790367--20790401	13	2.6	13	86	4	52	31	0	20	48	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20794893--20794940	2	24.0	2	100	0	96	50	0	0	50	1.00
20794964--20794995	2	16.0	2	93	0	55	46	3	0	50	1.17
20798140--20798380	51	4.9	48	78	11	236	30	18	21	29	1.97
20798140--20798391	48	5.1	48	75	9	229	31	18	21	28	1.97
20798140--20798380	99	2.4	99	85	4	333	30	18	21	29	1.97
20806546--20806853	81	3.8	81	89	1	454	41	11	5	41	1.64
20807214--20807310	23	4.1	23	85	2	113	40	16	20	22	1.91
20807320--20807689	49	7.5	49	85	3	465	34	16	22	25	1.95
20807320--20807647	97	3.3	98	85	3	408	34	16	22	26	1.95
20807320--20807689	146	2.5	148	84	3	485	34	16	22	25	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59